HEADER HYDROLASE 26-APR-12 4ARS TITLE HAFNIA ALVEI PHYTASE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE ACID PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHYTASE, MYO-INOSITOL HEXAKIS PHOSPHATE PHOSPHOHYDROLASE; COMPND 5 EC: 3.1.3.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAFNIA ALVEI; SOURCE 3 ORGANISM_TAXID: 569; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA,O.V.MOROZ,E.B.BLAGOVA,J.P.TURKENBURG,J.VEVODOVA,S.ROBERTS, AUTHOR 2 J.VIND,C.SJOHOLM,S.F.LASSEN,L.DE MARIA,V.GLITSOE,L.K.SKOV,K.S.WILSON REVDAT 4 20-DEC-23 4ARS 1 REMARK REVDAT 3 05-FEB-14 4ARS 1 JRNL REVDAT 2 19-JUN-13 4ARS 1 JRNL REVDAT 1 08-MAY-13 4ARS 0 JRNL AUTH A.ARIZA,O.V.MOROZ,E.V.BLAGOVA,J.P.TURKENBURG,J.WATERMAN, JRNL AUTH 2 S.M.ROBERTS,J.VIND,C.SJOHOLM,S.F.LASSEN,L.DE MARIA, JRNL AUTH 3 V.GLITSOE,L.K.SKOV,K.S.WILSON JRNL TITL DEGRADATION OF PHYTATE BY THE 6-PHYTASE FROM HAFNIA ALVEI: A JRNL TITL 2 COMBINED STRUCTURAL AND SOLUTION STUDY. JRNL REF PLOS ONE V. 8 65062 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23741456 JRNL DOI 10.1371/JOURNAL.PONE.0065062 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 31326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1702 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.57000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3426 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3267 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4698 ; 1.787 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7548 ; 0.906 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.148 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;38.702 ;24.671 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;14.260 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3948 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 780 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ARS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 35.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DKL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8MG/ML PROTEIN; 0.1 M HEPES PH 7.5, REMARK 280 10% ISOPROPANOL, 20% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.64000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.64000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.29500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.29500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.64000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.29500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.65500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.64000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.29500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.65500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OXT ACT A1423 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASP A 2 REMARK 465 ILE A 185 REMARK 465 SER A 186 REMARK 465 LYS A 187 REMARK 465 LEU A 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 285 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 65 O HOH A 2083 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 143 CG HIS A 143 CD2 0.055 REMARK 500 HIS A 253 CG HIS A 253 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 343 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 -73.86 65.38 REMARK 500 ALA A 107 68.48 -155.61 REMARK 500 THR A 263 114.89 -35.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1422 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1423 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ARO RELATED DB: PDB REMARK 900 HAFNIA ALVEI PHYTASE IN COMPLEX WITH MYO-INOSITOL HEXAKIS SULPHATE REMARK 900 RELATED ID: 4ARU RELATED DB: PDB REMARK 900 HAFNIA ALVEI PHYTASE IN COMPLEX WITH TARTRATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE ALSO CORRESPONDS TO THE EUROPEAN NUCLEOTIDE REMARK 999 ARCHIVE ENTRY JQ394762. REMARK 999 NATURAL SUBSTITUTIONS IN THIS SAMPLE. DBREF 4ARS A 1 413 UNP G9Y2J2 G9Y2J2_HAFAL 34 446 SEQADV 4ARS ARG A 12 UNP G9Y2J2 LYS 45 SEE REMARK 999 SEQADV 4ARS SER A 186 UNP G9Y2J2 GLY 219 SEE REMARK 999 SEQRES 1 A 413 SER ASP THR ALA PRO ALA GLY PHE GLN LEU GLU ARG VAL SEQRES 2 A 413 VAL ILE LEU SER ARG HIS GLY VAL ARG ALA PRO THR LYS SEQRES 3 A 413 MET THR GLN THR MET ARG ASP VAL THR PRO HIS GLN TRP SEQRES 4 A 413 PRO GLU TRP PRO VAL LYS LEU GLY TYR ILE THR PRO ARG SEQRES 5 A 413 GLY GLU HIS LEU ILE SER LEU MET GLY GLY PHE TYR ARG SEQRES 6 A 413 GLU ARG PHE GLN GLN GLN GLY LEU LEU PRO LYS ASP ASN SEQRES 7 A 413 CYS PRO THR PRO ASP ALA VAL TYR VAL TRP ALA ASP VAL SEQRES 8 A 413 ASP GLN ARG THR ARG LYS THR GLY GLU ALA PHE LEU ALA SEQRES 9 A 413 GLY LEU ALA PRO GLN CYS ASP LEU ALA ILE HIS HIS GLN SEQRES 10 A 413 GLN ASN THR GLN GLN ALA ASP PRO LEU PHE HIS PRO VAL SEQRES 11 A 413 LYS ALA GLY ILE CYS SER MET ASP LYS SER GLN VAL HIS SEQRES 12 A 413 ALA ALA VAL GLU LYS GLN ALA GLY THR PRO ILE GLU THR SEQRES 13 A 413 LEU ASN GLN ARG TYR GLN ALA SER LEU ALA LEU MET SER SEQRES 14 A 413 SER VAL LEU ASP PHE PRO LYS SER PRO TYR CYS GLN GLN SEQRES 15 A 413 HIS ASN ILE SER LYS LEU CYS ASP PHE SER GLN ALA MET SEQRES 16 A 413 PRO SER ARG LEU ALA ILE ASN ASP ASP GLY ASN LYS VAL SEQRES 17 A 413 ALA LEU GLU GLY ALA VAL GLY LEU ALA SER THR LEU ALA SEQRES 18 A 413 GLU ILE PHE LEU LEU GLU HIS ALA GLN GLY MET PRO LYS SEQRES 19 A 413 VAL ALA TRP GLY ASN ILE HIS THR GLU GLN GLN TRP ASN SEQRES 20 A 413 SER LEU LEU LYS LEU HIS ASN ALA GLN PHE ASP LEU MET SEQRES 21 A 413 SER ARG THR PRO TYR ILE ALA LYS HIS ASN GLY THR PRO SEQRES 22 A 413 LEU LEU GLN THR ILE ALA HIS ALA LEU GLY SER ASN ILE SEQRES 23 A 413 THR SER ARG PRO LEU PRO ASP ILE SER PRO ASP ASN LYS SEQRES 24 A 413 ILE LEU PHE ILE ALA GLY HIS ASP THR ASN ILE ALA ASN SEQRES 25 A 413 ILE SER GLY MET LEU GLY MET THR TRP THR LEU PRO GLY SEQRES 26 A 413 GLN PRO ASP ASN THR PRO PRO GLY GLY ALA LEU VAL PHE SEQRES 27 A 413 GLU ARG TRP VAL ASP ASN ALA GLY LYS PRO TYR VAL SER SEQRES 28 A 413 VAL ASN MET VAL TYR GLN THR LEU ALA GLN LEU HIS ASP SEQRES 29 A 413 GLN ALA PRO LEU THR LEU GLN HIS PRO ALA GLY SER VAL SEQRES 30 A 413 ARG LEU ASN ILE PRO GLY CYS SER ASP GLN THR PRO ASP SEQRES 31 A 413 GLY TYR CYS PRO LEU SER THR PHE SER ARG LEU VAL SER SEQRES 32 A 413 HIS SER VAL GLU PRO ALA CYS GLN LEU PRO HET GOL A1414 6 HET GOL A1415 6 HET GOL A1416 6 HET GOL A1417 6 HET GOL A1418 6 HET GOL A1419 6 HET GOL A1420 6 HET ACT A1421 4 HET ACT A1422 4 HET ACT A1423 4 HET ACT A1424 4 HET ACT A1425 4 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 7(C3 H8 O3) FORMUL 9 ACT 5(C2 H3 O2 1-) FORMUL 14 HOH *303(H2 O) HELIX 1 1 THR A 28 VAL A 34 1 7 HELIX 2 2 THR A 50 GLN A 71 1 22 HELIX 3 3 ASP A 92 ALA A 107 1 16 HELIX 4 4 ASP A 138 GLY A 151 1 14 HELIX 5 5 PRO A 153 ARG A 160 5 8 HELIX 6 6 TYR A 161 ASP A 173 1 13 HELIX 7 7 PHE A 174 LYS A 176 5 3 HELIX 8 8 SER A 177 GLN A 182 1 6 HELIX 9 9 ASP A 190 MET A 195 1 6 HELIX 10 10 GLY A 212 GLN A 230 1 19 HELIX 11 11 VAL A 235 ASN A 239 5 5 HELIX 12 12 THR A 242 ARG A 262 1 21 HELIX 13 13 THR A 263 GLY A 283 1 21 HELIX 14 14 HIS A 306 GLY A 318 1 13 HELIX 15 15 THR A 358 GLN A 365 1 8 HELIX 16 16 LEU A 395 VAL A 406 1 12 HELIX 17 17 GLU A 407 GLN A 411 5 5 SHEET 1 AA 7 HIS A 115 HIS A 116 0 SHEET 2 AA 7 VAL A 85 ALA A 89 1 O VAL A 87 N HIS A 115 SHEET 3 AA 7 ILE A 300 GLY A 305 1 O ILE A 300 N TYR A 86 SHEET 4 AA 7 GLN A 9 ARG A 18 1 O VAL A 13 N LEU A 301 SHEET 5 AA 7 ALA A 335 VAL A 342 -1 O LEU A 336 N LEU A 16 SHEET 6 AA 7 PRO A 348 TYR A 356 -1 O TYR A 349 N TRP A 341 SHEET 7 AA 7 GLY A 375 ARG A 378 -1 O GLY A 375 N TYR A 356 SHEET 1 AB 7 HIS A 115 HIS A 116 0 SHEET 2 AB 7 VAL A 85 ALA A 89 1 O VAL A 87 N HIS A 115 SHEET 3 AB 7 ILE A 300 GLY A 305 1 O ILE A 300 N TYR A 86 SHEET 4 AB 7 GLN A 9 ARG A 18 1 O VAL A 13 N LEU A 301 SHEET 5 AB 7 ALA A 335 VAL A 342 -1 O LEU A 336 N LEU A 16 SHEET 6 AB 7 PRO A 348 TYR A 356 -1 O TYR A 349 N TRP A 341 SHEET 7 AB 7 CYS A 393 PRO A 394 -1 O CYS A 393 N VAL A 350 SHEET 1 AC 2 GLY A 375 ARG A 378 0 SHEET 2 AC 2 PRO A 348 TYR A 356 -1 O MET A 354 N VAL A 377 SHEET 1 AD 2 ARG A 198 ILE A 201 0 SHEET 2 AD 2 VAL A 208 GLU A 211 -1 O ALA A 209 N ALA A 200 SSBOND 1 CYS A 79 CYS A 110 1555 1555 2.09 SSBOND 2 CYS A 135 CYS A 410 1555 1555 2.05 SSBOND 3 CYS A 180 CYS A 189 1555 1555 2.08 SSBOND 4 CYS A 384 CYS A 393 1555 1555 2.14 SITE 1 AC1 3 HIS A 115 HIS A 116 GLN A 118 SITE 1 AC2 5 ARG A 262 SER A 314 THR A 320 TRP A 321 SITE 2 AC2 5 ASN A 329 SITE 1 AC3 7 THR A 277 HIS A 280 ALA A 281 SER A 288 SITE 2 AC3 7 ARG A 289 PRO A 290 LEU A 291 SITE 1 AC4 3 ARG A 52 GLN A 365 HOH A2302 SITE 1 AC5 6 MET A 137 ASN A 206 LYS A 207 VAL A 208 SITE 2 AC5 6 ASN A 270 HOH A2228 SITE 1 AC6 9 THR A 320 TRP A 321 THR A 322 VAL A 377 SITE 2 AC6 9 ARG A 378 LEU A 379 ASN A 380 HOH A2257 SITE 3 AC6 9 HOH A2258 SITE 1 AC7 4 ASP A 364 GLY A 375 HOH A2278 HOH A2287 SITE 1 AC8 5 MET A 27 THR A 28 GLN A 29 ARG A 32 SITE 2 AC8 5 HOH A2013 SITE 1 AC9 1 LYS A 268 SITE 1 BC1 2 GLY A 7 ASN A 344 SITE 1 BC2 3 ARG A 67 PHE A 68 GLU A 339 CRYST1 100.590 101.310 85.280 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011726 0.00000