HEADER CELL ADHESION 02-MAY-12 4ASL TITLE STRUCTURE OF EPA1A IN COMPLEX WITH THE T-ANTIGEN (GAL-B1-3- GALNAC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPA1P; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADHESION DOMAIN (A DOMAIN), RESIDUES 31-271; COMPND 5 SYNONYM: EPITHELIAL ADHESIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA; SOURCE 3 ORGANISM_TAXID: 5478; SOURCE 4 STRAIN: CBS138; SOURCE 5 ATCC: 2001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: SHUFFLE T7 EXPRESS (C3029); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS CELL ADHESION, LECTIN, TISSUE INVASION, PATHOGENICITY EXPDTA X-RAY DIFFRACTION AUTHOR M.MAESTRE-REYNA,R.DIDERRICH,M.S.VEELDERS,G.EULENBURG,V.KALUGIN, AUTHOR 2 S.BRUECKNER,P.KELLER,S.RUPP,H.-U.MOESCH,L.-O.ESSEN REVDAT 6 06-NOV-24 4ASL 1 REMARK REVDAT 5 01-MAY-24 4ASL 1 HETSYN LINK REVDAT 4 29-JUL-20 4ASL 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 14-JUN-17 4ASL 1 ATOM REVDAT 2 07-NOV-12 4ASL 1 JRNL REVDAT 1 17-OCT-12 4ASL 0 JRNL AUTH M.MAESTRE-REYNA,R.DIDERRICH,M.S.VEELDERS,G.EULENBURG, JRNL AUTH 2 V.KALUGIN,S.BRUCKNER,P.KELLER,S.RUPP,H.MOSCH,L.-O.ESSEN JRNL TITL STRUCTURAL BASIS FOR PROMISCUITY AND SPECIFICITY DURING JRNL TITL 2 CANDIDA GLABRATA INVASION OF HOST EPITHELIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 16864 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23035251 JRNL DOI 10.1073/PNAS.1207653109 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 72672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2579 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1820 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2169 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1476 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2995 ; 1.524 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3617 ; 0.845 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 7.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;32.630 ;23.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 338 ;13.991 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.496 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2483 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1269 ; 3.081 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 502 ; 0.906 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2083 ; 4.564 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 900 ; 3.886 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 882 ; 5.506 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3645 ; 1.746 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ASL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91801 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: EPA1A WILD TYPE, COMPLEXED WITH LACTOSE REMARK 200 CONTAMINANT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.5 0.2M AMMOMIUM SULFATE REMARK 280 25% PEG 5000 MME 0.025 M LACTOSE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.003491 0.06056 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.69995 REMARK 290 SMTRY1 3 -1.000000 0.003491 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 -0.003491 0.06056 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.69995 REMARK 290 SMTRY1 4 1.000000 -0.003491 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.39067 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.94992 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.39067 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.003491 52.01048 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.69995 REMARK 290 SMTRY1 7 -1.000000 0.003491 0.000000 37.39067 REMARK 290 SMTRY2 7 0.000000 1.000000 -0.003491 52.01048 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.69995 REMARK 290 SMTRY1 8 1.000000 -0.003491 0.000000 37.39067 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.94992 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.003491 0.000000 74.60000 REMARK 350 BIOMT2 2 0.000000 1.000000 -0.003491 -0.06056 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.69995 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 MET A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 ASN A 34 REMARK 465 ASP A 35 REMARK 465 ILE A 36 REMARK 465 SER A 37 REMARK 465 LEU A 38 REMARK 465 TYR A 268 REMARK 465 ASP A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CE NZ REMARK 470 LYS A 73 CE NZ REMARK 470 LYS A 134 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 97 O HOH A 404 1.79 REMARK 500 O7 NGA B 1 O HOH A 406 1.96 REMARK 500 OG SER A 67 O HOH A 407 2.13 REMARK 500 O HOH A 460 O HOH A 740 2.15 REMARK 500 O HOH A 607 O HOH A 720 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 664 O HOH A 744 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -158.27 -76.41 REMARK 500 ASP A 53 -130.00 -85.19 REMARK 500 HIS A 96 -169.06 -66.69 REMARK 500 ASN A 140 97.05 -161.17 REMARK 500 ALA A 176 -64.27 -90.20 REMARK 500 TYR A 228 -143.84 61.22 REMARK 500 TYR A 228 -143.84 60.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 797 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 800 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 7.13 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BETA-D-GALACTOSE (GAL): NON-REDUCING END OF T-ANTIGEN REMARK 600 N-ACETYL-D-GALACTOSAMINE (NGA): REDUCING END OF THE REMARK 600 T-ANTIGEN REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 53 OD2 REMARK 620 2 ASP A 53 OD2 70.9 REMARK 620 3 GLU A 239 O 47.3 41.5 REMARK 620 4 HOH A 689 O 73.5 122.5 81.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 64 OE1 REMARK 620 2 TYR A 66 OH 71.0 REMARK 620 3 GOL A 309 O3 141.7 74.0 REMARK 620 4 HOH A 517 O 72.9 133.9 145.3 REMARK 620 5 HOH A 638 O 110.7 45.3 31.1 172.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD1 REMARK 620 2 HOH A 553 O 116.8 REMARK 620 3 HOH A 579 O 117.5 90.1 REMARK 620 4 HOH A 648 O 122.2 102.5 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD1 REMARK 620 2 ASP A 165 OD2 80.1 REMARK 620 3 ASN A 225 OD1 108.1 70.8 REMARK 620 4 GLU A 227 O 166.7 113.2 78.3 REMARK 620 5 GLU A 227 O 167.9 111.7 79.2 2.3 REMARK 620 6 ASP A 229 O 82.4 138.9 79.9 87.4 89.6 REMARK 620 7 GAL B 2 O3 92.2 71.7 133.0 91.6 89.5 146.1 REMARK 620 8 GAL B 2 O4 77.1 131.5 157.4 92.6 92.6 79.0 67.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 206 OE2 REMARK 620 2 GLU A 206 OE2 91.3 REMARK 620 3 HOH A 737 O 118.9 149.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 598 O REMARK 620 2 HOH A 598 O 0.0 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A3X RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EPA1 ADHESIN (EPA1-NP) REMARK 900 FROM THE PATHOGENIC YEAST CANDIDA GLABRATA, IN COMPLEX WITH CALCIUM REMARK 900 AND LACTOSE REMARK 900 RELATED ID: 4AF9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 1 A DOMAIN ( EPA1A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLC REMARK 900 RELATED ID: 4AFA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 2 A REMARK 900 DOMAIN (EPA1TO2A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 4AFB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 3 A REMARK 900 DOMAIN (EPA1TO3A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 4AFC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 6 A REMARK 900 DOMAIN (EPA1TO6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC REMARK 999 REMARK 999 SEQUENCE REMARK 999 Q6VBJ0 REPRESENTS THE FULL EPA1A SEQUENCE. WE USED THE REMARK 999 Q6VBJ0 NUMBERING THROUGHOUT THIS WORK. DBREF 4ASL A 31 271 UNP Q6VBJ0 Q6VBJ0_CANGB 31 271 SEQADV 4ASL SER A 13 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL HIS A 14 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL HIS A 15 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL HIS A 16 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL HIS A 17 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL HIS A 18 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL HIS A 19 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL SER A 20 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL SER A 21 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL GLY A 22 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL LEU A 23 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL VAL A 24 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL PRO A 25 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL ARG A 26 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL GLY A 27 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL SER A 28 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL HIS A 29 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4ASL MET A 30 UNP Q6VBJ0 EXPRESSION TAG SEQRES 1 A 259 SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 259 ARG GLY SER HIS MET THR SER SER ASN ASP ILE SER LEU SEQRES 3 A 259 ALA SER LYS ASP PRO THR THR PHE PRO LEU GLY CYS SER SEQRES 4 A 259 PRO ASP ILE THR THR PRO LYS LYS GLY LEU SER MET GLU SEQRES 5 A 259 LEU TYR SER TYR ASP PHE ARG LYS LYS GLY SER TYR PRO SEQRES 6 A 259 CYS TRP ASP ALA ALA TYR LEU ASP PRO ASN TYR PRO ARG SEQRES 7 A 259 THR GLY TYR LYS SER HIS ARG LEU LEU ALA LYS VAL ASP SEQRES 8 A 259 GLY VAL THR GLY ASN ILE ASN PHE TYR TYR HIS ALA THR SEQRES 9 A 259 LYS GLY CYS THR PRO GLN LEU GLY HIS LEU PRO ALA SER SEQRES 10 A 259 TYR ASN TYR PRO LYS PRO LEU THR MET THR ASN PHE THR SEQRES 11 A 259 MET LEU LEU TYR GLY TYR PHE ARG PRO LYS VAL THR GLY SEQRES 12 A 259 PHE HIS THR PHE THR ILE SER ALA ASP ASP LEU LEU PHE SEQRES 13 A 259 VAL ASN PHE GLY ALA GLY ASN ALA PHE ASP CYS CYS ARG SEQRES 14 A 259 ARG ASP SER SER ALA ASP HIS PHE GLY ASN TYR GLN ALA SEQRES 15 A 259 TYR ALA ILE TRP GLY SER LYS THR ALA LYS ASP GLU LEU SEQRES 16 A 259 THR VAL HIS LEU ASP ALA GLY VAL TYR TYR PRO ILE ARG SEQRES 17 A 259 LEU PHE TYR ASN ASN ARG GLU TYR ASP GLY ALA LEU SER SEQRES 18 A 259 PHE THR PHE LYS THR GLU SER ASN GLU ASN THR VAL SER SEQRES 19 A 259 ASP PHE SER GLU TYR PHE PHE SER LEU ASP ASP THR GLU SEQRES 20 A 259 GLU GLY CYS PRO GLY LEU ILE SER TYR ASP SER SER HET NGA B 1 15 HET GAL B 2 11 HET CA A 301 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HET GOL A 308 6 HET GOL A 309 6 HET NA A 310 1 HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NGA C8 H15 N O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 NA 5(NA 1+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *402(H2 O) HELIX 1 AA1 ALA A 81 ASP A 85 5 5 HELIX 2 AA2 THR A 91 HIS A 96 5 6 HELIX 3 AA3 PRO A 127 ASN A 131 5 5 HELIX 4 AA4 ARG A 181 ALA A 186 1 6 SHEET 1 AA1 5 LYS A 58 LYS A 59 0 SHEET 2 AA1 5 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AA1 5 PHE A 141 PHE A 149 -1 N TYR A 148 O PHE A 253 SHEET 4 AA1 5 LEU A 61 SER A 67 -1 N TYR A 66 O THR A 142 SHEET 5 AA1 5 LEU A 98 VAL A 105 -1 O LEU A 99 N LEU A 65 SHEET 1 AA2 6 LYS A 58 LYS A 59 0 SHEET 2 AA2 6 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AA2 6 PHE A 141 PHE A 149 -1 N TYR A 148 O PHE A 253 SHEET 4 AA2 6 TYR A 217 ASN A 225 -1 O TYR A 223 N MET A 143 SHEET 5 AA2 6 LEU A 166 PHE A 171 -1 N PHE A 168 O PHE A 222 SHEET 6 AA2 6 ALA A 194 ILE A 197 -1 O ALA A 194 N VAL A 169 SHEET 1 AA3 4 PHE A 111 TYR A 113 0 SHEET 2 AA3 4 GLY A 230 THR A 238 -1 O GLY A 230 N TYR A 113 SHEET 3 AA3 4 GLY A 155 ASP A 164 -1 N THR A 158 O LYS A 237 SHEET 4 AA3 4 LYS A 204 LEU A 211 -1 O VAL A 209 N HIS A 157 SHEET 1 AA4 2 LEU A 123 GLY A 124 0 SHEET 2 AA4 2 LEU A 136 THR A 137 -1 O LEU A 136 N GLY A 124 SSBOND 1 CYS A 50 CYS A 179 1555 1555 2.07 SSBOND 2 CYS A 78 CYS A 119 1555 1555 2.05 SSBOND 3 CYS A 180 CYS A 262 1555 1555 2.06 LINK O3 NGA B 1 C1 GAL B 2 1555 1555 1.43 LINK OD2AASP A 53 NA NA A 307 1555 1555 2.74 LINK OD2BASP A 53 NA NA A 307 1555 1555 2.97 LINK OE1 GLU A 64 NA NA A 306 1555 1555 2.48 LINK OH TYR A 66 NA NA A 306 1555 1555 2.09 LINK OD1 ASP A 69 NA NA A 304 1555 1555 2.07 LINK OD1 ASP A 164 CA CA A 301 1555 1555 2.34 LINK OD2 ASP A 165 CA CA A 301 1555 1555 2.44 LINK OE2 GLU A 206 NA NA A 305 1555 1555 2.45 LINK OE2 GLU A 206 NA NA A 305 3654 1555 2.28 LINK OD1 ASN A 225 CA CA A 301 1555 1555 2.35 LINK O AGLU A 227 CA CA A 301 1555 1555 2.36 LINK O BGLU A 227 CA CA A 301 1555 1555 2.40 LINK O ASP A 229 CA CA A 301 1555 1555 2.35 LINK O GLU A 239 NA NA A 307 1555 6554 2.62 LINK CA CA A 301 O3 GAL B 2 1555 1555 2.41 LINK CA CA A 301 O4 GAL B 2 1555 1555 2.45 LINK NA NA A 304 O HOH A 553 1555 1555 3.14 LINK NA NA A 304 O HOH A 579 1555 1555 2.68 LINK NA NA A 304 O HOH A 648 1555 1555 2.31 LINK NA NA A 305 O HOH A 737 1555 1555 2.31 LINK NA NA A 306 O3 GOL A 309 1555 1555 2.33 LINK NA NA A 306 O HOH A 517 1555 1555 2.11 LINK NA NA A 306 O HOH A 638 3655 1555 2.88 LINK NA NA A 307 O HOH A 689 1555 1555 2.74 LINK NA NA A 310 O HOH A 598 1555 1555 2.43 LINK NA NA A 310 O HOH A 598 3654 1555 2.83 CISPEP 1 TYR A 76 PRO A 77 0 -11.61 CISPEP 2 ASP A 164 ASP A 165 0 12.62 CRYST1 74.600 103.900 69.400 89.90 90.00 89.90 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013405 -0.000023 0.000000 0.00000 SCALE2 0.000000 0.009625 -0.000017 0.00000 SCALE3 0.000000 0.000000 0.014409 0.00000