HEADER HYDROLASE 02-MAY-12 4ASM TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BETA-AGARASE D FROM TITLE 2 ZOBELLIA GALACTANIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AGARASE D; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 21-377; COMPND 5 SYNONYM: BETA-AGARASE D\, FAMILY GH16; COMPND 6 EC: 3.2.1.81; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOBELLIA GALACTANIVORANS; SOURCE 3 ORGANISM_TAXID: 63186; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PFO4; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE, ENDO-BETA-AGARASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.HEHEMANN,G.CORREC,T.BERNARD,G.MICHEL,M.CZJZEK REVDAT 4 20-DEC-23 4ASM 1 REMARK LINK REVDAT 3 09-AUG-17 4ASM 1 REMARK REVDAT 2 12-SEP-12 4ASM 1 JRNL REVDAT 1 25-JUL-12 4ASM 0 JRNL AUTH J.H.HEHEMANN,G.CORREC,F.THOMAS,T.BERNARD,T.BARBEYRON,M.JAM, JRNL AUTH 2 W.HELBERT,G.MICHEL,M.CZJZEK JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE COMPLEX JRNL TITL 2 AGAROLYTIC ENZYME SYSTEM FROM THE MARINE BACTERIUM ZOBELLIA JRNL TITL 3 GALACTANIVORANS. JRNL REF J.BIOL.CHEM. V. 287 30571 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22778272 JRNL DOI 10.1074/JBC.M112.377184 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2839 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2951 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 10 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4023 ; 1.441 ; 1.918 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22 ; 0.876 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.981 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.495 ;24.934 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;12.873 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2347 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1555 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 19 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2030 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3 ; 0.048 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 488 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.075 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1830 ; 0.784 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2901 ; 1.283 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1320 ; 1.958 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1121 ; 2.820 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ASM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1O4Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-34 % PEG 8000 AND 0,1 M IMIDAZOLE REMARK 280 PH 8, 4% ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.62350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.84750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.63400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.84750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.62350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.63400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2307 O HOH B 2547 1.49 REMARK 500 O HOH B 2208 O HOH B 2209 1.55 REMARK 500 O HOH B 2143 O HOH B 2547 1.70 REMARK 500 SD MET B 137 O HOH B 2321 1.73 REMARK 500 OG SER B 332 O HOH B 2554 1.89 REMARK 500 O HOH B 2154 O HOH B 2155 1.89 REMARK 500 O HOH B 2085 O HOH B 2201 1.92 REMARK 500 O HOH B 2100 O HOH B 2137 2.03 REMARK 500 O HOH B 2201 O HOH B 2202 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 46 -125.35 43.63 REMARK 500 ASN B 53 42.41 -86.42 REMARK 500 HIS B 78 33.26 -97.46 REMARK 500 TYR B 162 78.19 -104.09 REMARK 500 ASN B 190 59.59 -91.38 REMARK 500 ASN B 242 -73.90 66.88 REMARK 500 SER B 311 -1.89 -149.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2052 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B2075 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1359 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 4 OD2 REMARK 620 2 ASP B 29 O 86.6 REMARK 620 3 ASN B 31 OD1 90.2 70.5 REMARK 620 4 GLY B 84 O 169.6 100.6 85.2 REMARK 620 5 ASP B 349 O 101.5 71.3 139.1 88.0 REMARK 620 6 ASP B 349 OD1 87.0 143.5 145.3 91.5 75.0 REMARK 620 7 HOH B2017 O 87.5 142.2 72.2 82.3 146.3 73.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 1360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1361 DBREF 4ASM B 2 358 UNP D7GXG4 D7GXG4_ZOBGA 21 377 SEQADV 4ASM HIS B -4 UNP D7GXG4 EXPRESSION TAG SEQADV 4ASM HIS B -3 UNP D7GXG4 EXPRESSION TAG SEQADV 4ASM HIS B -2 UNP D7GXG4 EXPRESSION TAG SEQADV 4ASM HIS B -1 UNP D7GXG4 EXPRESSION TAG SEQADV 4ASM HIS B 0 UNP D7GXG4 EXPRESSION TAG SEQADV 4ASM HIS B 1 UNP D7GXG4 EXPRESSION TAG SEQRES 1 B 363 HIS HIS HIS HIS HIS HIS GLN TYR ASP TRP ASP ASN VAL SEQRES 2 B 363 PRO ILE PRO ALA ASN ALA GLY ALA GLY LYS THR TRP LYS SEQRES 3 B 363 LEU GLN THR ALA ALA SER ASP ASP PHE ASN TYR THR PHE SEQRES 4 B 363 ASN PRO THR ASN ASN VAL VAL ASP PHE GLY PRO ASN GLY SEQRES 5 B 363 ASN MET LYS TRP TYR ASN LYS TYR HIS ASN ARG PRO ASN SEQRES 6 B 363 GLY GLN PRO ASN ASN PHE GLU GLY PRO GLY PRO THR LYS SEQRES 7 B 363 TRP MET GLN ASN HIS VAL ALA VAL SER GLY GLY ASN LEU SEQRES 8 B 363 ASN ILE TRP ALA SER ARG ILE PRO GLY ALA THR LYS SER SEQRES 9 B 363 PHE THR GLY SER ASN ASN THR PRO ILE SER ARG PRO GLU SEQRES 10 B 363 THR ARG ALA GLY CYS ILE THR ASN LYS THR ARG VAL LYS SEQRES 11 B 363 TYR PRO VAL PHE VAL GLU ALA ARG VAL LYS VAL MET ASN SEQRES 12 B 363 SER THR LEU ALA SER ASP ILE TRP LEU LEU SER PRO ASP SEQRES 13 B 363 ASP THR GLN GLU ILE ASP ILE MET GLU CYS TYR GLY GLY SEQRES 14 B 363 PRO GLY ASN ASP ASN ARG ASN SER TYR PHE ALA SER LYS SEQRES 15 B 363 ILE HIS LEU SER HIS HIS VAL PHE ILE ARG PRO PRO ASN SEQRES 16 B 363 PHE LYS ASP TYR GLN PRO ALA ASP LEU ASN SER TRP TRP SEQRES 17 B 363 GLY LYS ASN GLY VAL THR GLN TRP GLY GLY LYS THR ILE SEQRES 18 B 363 ARG ILE GLY VAL ASN TRP VAL SER PRO THR ARG LEU GLU SEQRES 19 B 363 TYR PHE VAL ASP GLY GLN MET VAL ARG ILE LEU ASP ASN SEQRES 20 B 363 ASP ALA VAL GLN THR ARG LEU ALA ASP GLY THR TRP GLN SEQRES 21 B 363 TYR THR TYR PRO ALA GLY VAL THR SER THR GLY VAL ASN SEQRES 22 B 363 GLY GLN LEU ILE LYS GLU ASN GLY TYR GLN LYS MET ASN SEQRES 23 B 363 ILE ALA SER SER LEU SER ASP ALA LYS ASN LYS SER ASN SEQRES 24 B 363 ILE SER VAL ILE ASP PRO PHE ASN TYR LEU ASN ASN GLY SEQRES 25 B 363 ARG LYS PHE SER LYS GLU MET ASP ILE ILE ILE ASN VAL SEQRES 26 B 363 GLU ASP GLN SER TRP GLN ALA GLU ALA TYR ARG SER PRO SEQRES 27 B 363 ASN ALA ALA GLU MET ALA ASN PHE TYR ASP ASN ASN LEU SEQRES 28 B 363 LEU VAL ASP TRP ILE ARG VAL TYR LYS PRO VAL ASN HET CA B1359 1 HET IMD B1360 5 HET PEG B1361 7 HETNAM CA CALCIUM ION HETNAM IMD IMIDAZOLE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 CA CA 2+ FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *595(H2 O) HELIX 1 1 ASN B 171 SER B 176 1 6 HELIX 2 2 SER B 285 SER B 293 1 9 HELIX 3 3 GLN B 323 ALA B 329 1 7 HELIX 4 4 ASN B 334 ALA B 339 1 6 HELIX 5 5 ASN B 340 ASP B 343 5 4 SHEET 1 BA 2 THR B 19 LEU B 22 0 SHEET 2 BA 2 ASN B 345 VAL B 357 -1 O LYS B 355 N LYS B 21 SHEET 1 BB11 THR B 72 TRP B 74 0 SHEET 2 BB11 THR B 113 ALA B 115 1 O THR B 113 N LYS B 73 SHEET 3 BB11 ASN B 85 SER B 91 -1 O SER B 91 N ARG B 114 SHEET 4 BB11 ASN B 345 VAL B 357 -1 O LEU B 346 N ILE B 88 SHEET 5 BB11 VAL B 128 LYS B 135 -1 O PHE B 129 N TYR B 354 SHEET 6 BB11 THR B 215 SER B 224 -1 O ILE B 216 N VAL B 134 SHEET 7 BB11 ARG B 227 VAL B 232 -1 O ARG B 227 N VAL B 223 SHEET 8 BB11 GLN B 235 ASP B 241 -1 O GLN B 235 N VAL B 232 SHEET 9 BB11 ALA B 244 ARG B 248 -1 O ALA B 244 N ASP B 241 SHEET 10 BB11 TRP B 254 PRO B 259 -1 O GLN B 255 N THR B 247 SHEET 11 BB11 MET B 280 ALA B 283 -1 O ASN B 281 N TYR B 258 SHEET 1 BC 4 THR B 72 TRP B 74 0 SHEET 2 BC 4 THR B 113 ALA B 115 1 O THR B 113 N LYS B 73 SHEET 3 BC 4 ASN B 85 SER B 91 -1 O SER B 91 N ARG B 114 SHEET 4 BC 4 VAL B 79 SER B 82 1 O ALA B 80 N ASN B 87 SHEET 1 BD 8 ASP B 42 PHE B 43 0 SHEET 2 BD 8 TRP B 51 TYR B 52 -1 O TRP B 51 N PHE B 43 SHEET 3 BD 8 CYS B 117 ASN B 120 -1 O THR B 119 N TYR B 52 SHEET 4 BD 8 ASP B 315 GLU B 321 -1 O ILE B 316 N ASN B 120 SHEET 5 BD 8 ALA B 142 LEU B 148 -1 O ALA B 142 N GLU B 321 SHEET 6 BD 8 GLN B 154 CYS B 161 -1 O ILE B 156 N LEU B 147 SHEET 7 BD 8 HIS B 182 ILE B 186 -1 O HIS B 183 N GLU B 155 SHEET 8 BD 8 LYS B 192 TYR B 194 -1 O LYS B 192 N ILE B 186 SHEET 1 BE 2 THR B 97 THR B 101 0 SHEET 2 BE 2 PRO B 107 PRO B 111 -1 O ILE B 108 N PHE B 100 SHEET 1 BF 2 ILE B 178 HIS B 179 0 SHEET 2 BF 2 TRP B 202 TRP B 203 -1 O TRP B 203 N ILE B 178 SHEET 1 BG 2 LYS B 273 GLU B 274 0 SHEET 2 BG 2 TYR B 277 GLN B 278 -1 O TYR B 277 N GLU B 274 LINK OD2 ASP B 4 CA CA B1359 1555 1555 2.31 LINK O ASP B 29 CA CA B1359 1555 1555 2.36 LINK OD1 ASN B 31 CA CA B1359 1555 1555 2.49 LINK O GLY B 84 CA CA B1359 1555 1555 2.36 LINK O ASP B 349 CA CA B1359 1555 1555 2.48 LINK OD1 ASP B 349 CA CA B1359 1555 1555 2.36 LINK CA CA B1359 O HOH B2017 1555 1555 2.43 CISPEP 1 TYR B 126 PRO B 127 0 -6.30 CISPEP 2 PRO B 188 PRO B 189 0 9.44 SITE 1 AC1 6 ASP B 4 ASP B 29 ASN B 31 GLY B 84 SITE 2 AC1 6 ASP B 349 HOH B2017 SITE 1 AC2 7 ASP B 144 TRP B 146 GLU B 155 ASP B 157 SITE 2 AC2 7 GLU B 160 GLU B 321 GLN B 323 SITE 1 AC3 11 GLU B 160 TYR B 162 HIS B 179 GLN B 195 SITE 2 AC3 11 TRP B 202 GLN B 323 TRP B 325 HOH B2365 SITE 3 AC3 11 HOH B2556 HOH B2594 HOH B2595 CRYST1 53.247 77.268 83.695 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011948 0.00000