HEADER IMMUNE SYSTEM 05-MAY-12 4AT9 TITLE CRYSTAL STRUCTURE OF THE NF90-NF45 DIMERISATION DOMAIN COMPLEX WITH TITLE 2 UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN ENHANCER-BINDING FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DZF DOMAIN, RESIDUES 29-390; COMPND 5 SYNONYM: NUCLEAR FACTOR OF ACTIVATED T-CELLS 45 KDA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INTERLEUKIN ENHANCER-BINDING FACTOR 3; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: DZF DOMAIN, RESIDUES 1-381; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6-P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PETMCN-HIS KEYWDS IMMUNE SYSTEM, DRPB76, NFAR, ILF3, ILF2, TEMPLATE-FREE KEYWDS 2 NUCLEOTIDYLTRANSFERASE FOLD EXPDTA X-RAY DIFFRACTION AUTHOR U.M.WOLKOWICZ,A.G.COOK REVDAT 4 20-DEC-23 4AT9 1 REMARK REVDAT 3 20-JUN-18 4AT9 1 LINK REVDAT 2 31-OCT-12 4AT9 1 JRNL REVDAT 1 01-AUG-12 4AT9 0 JRNL AUTH U.M.WOLKOWICZ,A.G.COOK JRNL TITL NF45 DIMERIZES WITH NF90, ZFR AND SPNR VIA A CONSERVED JRNL TITL 2 DOMAIN THAT HAS A NUCLEOTIDYLTRANSFERASE FOLD. JRNL REF NUCLEIC ACIDS RES. V. 40 9356 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22833610 JRNL DOI 10.1093/NAR/GKS696 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 23928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.5149 - 5.8287 0.93 2588 134 0.2237 0.2467 REMARK 3 2 5.8287 - 4.6272 0.95 2527 135 0.2122 0.2379 REMARK 3 3 4.6272 - 4.0425 0.96 2512 152 0.1932 0.2119 REMARK 3 4 4.0425 - 3.6729 0.96 2527 141 0.2157 0.2694 REMARK 3 5 3.6729 - 3.4097 0.97 2516 139 0.2344 0.2533 REMARK 3 6 3.4097 - 3.2087 0.97 2508 152 0.2577 0.2774 REMARK 3 7 3.2087 - 3.0480 0.97 2524 134 0.2740 0.3120 REMARK 3 8 3.0480 - 2.9154 0.98 2555 126 0.3167 0.3684 REMARK 3 9 2.9154 - 2.8031 0.94 2434 124 0.3295 0.3460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 24.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4853 REMARK 3 ANGLE : 0.999 6626 REMARK 3 CHIRALITY : 0.058 804 REMARK 3 PLANARITY : 0.006 850 REMARK 3 DIHEDRAL : 15.026 1722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 67.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AT7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-14% PEG 3350, 200 MM MGCL2, 100 MM REMARK 280 MES PH 6.5 AND 5% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.92450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.75800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.99150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.92450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.75800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.99150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.92450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.75800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.99150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.92450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.75800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.99150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 257 REMARK 465 THR A 258 REMARK 465 ALA A 267 REMARK 465 PRO A 362 REMARK 465 GLU A 363 REMARK 465 LYS A 364 REMARK 465 LYS A 365 REMARK 465 GLU A 366 REMARK 465 GLY A 367 REMARK 465 GLU A 368 REMARK 465 GLU A 369 REMARK 465 GLU A 370 REMARK 465 GLU A 371 REMARK 465 GLU A 372 REMARK 465 ASN A 373 REMARK 465 THR A 374 REMARK 465 GLU A 375 REMARK 465 GLU A 376 REMARK 465 PRO A 377 REMARK 465 PRO A 378 REMARK 465 GLN A 379 REMARK 465 GLY A 380 REMARK 465 GLU A 381 REMARK 465 GLU A 382 REMARK 465 GLU A 383 REMARK 465 GLU A 384 REMARK 465 SER A 385 REMARK 465 MET A 386 REMARK 465 GLU A 387 REMARK 465 THR A 388 REMARK 465 GLN A 389 REMARK 465 GLU A 390 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PRO B 3 REMARK 465 MET B 4 REMARK 465 ARG B 5 REMARK 465 ASN B 56 REMARK 465 SER B 57 REMARK 465 GLU B 58 REMARK 465 LEU B 59 REMARK 465 SER B 60 REMARK 465 GLU B 61 REMARK 465 ALA B 62 REMARK 465 GLU B 63 REMARK 465 ASN B 64 REMARK 465 MET B 65 REMARK 465 ASP B 66 REMARK 465 THR B 67 REMARK 465 PRO B 68 REMARK 465 PRO B 69 REMARK 465 ASP B 70 REMARK 465 ASP B 71 REMARK 465 GLU B 72 REMARK 465 SER B 73 REMARK 465 LYS B 74 REMARK 465 GLU B 75 REMARK 465 GLY B 76 REMARK 465 ALA B 77 REMARK 465 GLY B 78 REMARK 465 GLU B 79 REMARK 465 GLN B 80 REMARK 465 LYS B 81 REMARK 465 ALA B 82 REMARK 465 GLU B 83 REMARK 465 HIS B 84 REMARK 465 MET B 85 REMARK 465 THR B 86 REMARK 465 VAL B 183 REMARK 465 LEU B 184 REMARK 465 ALA B 185 REMARK 465 GLY B 186 REMARK 465 GLU B 187 REMARK 465 THR B 188 REMARK 465 LEU B 189 REMARK 465 SER B 190 REMARK 465 VAL B 191 REMARK 465 SER B 341 REMARK 465 LYS B 342 REMARK 465 MET B 343 REMARK 465 PRO B 344 REMARK 465 LYS B 345 REMARK 465 LYS B 346 REMARK 465 PRO B 347 REMARK 465 LYS B 348 REMARK 465 ASN B 349 REMARK 465 GLU B 350 REMARK 465 ASN B 351 REMARK 465 PRO B 352 REMARK 465 ALA B 366 REMARK 465 ILE B 367 REMARK 465 THR B 368 REMARK 465 PRO B 369 REMARK 465 MET B 370 REMARK 465 LYS B 371 REMARK 465 ARG B 372 REMARK 465 PRO B 373 REMARK 465 MET B 374 REMARK 465 GLU B 375 REMARK 465 GLU B 376 REMARK 465 ASP B 377 REMARK 465 GLY B 378 REMARK 465 GLU B 379 REMARK 465 GLU B 380 REMARK 465 LYS B 381 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 MET A 39 CE REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 45 CB CG CD CE NZ REMARK 470 ALA A 47 CB REMARK 470 ASP A 49 OD1 OD2 REMARK 470 LYS A 59 CE NZ REMARK 470 GLN A 62 CG CD OE1 NE2 REMARK 470 THR A 79 CG2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 ARG A 103 CZ NH1 NH2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 ILE A 128 CG1 CG2 CD1 REMARK 470 LEU A 129 CG CD1 CD2 REMARK 470 GLU A 133 OE1 OE2 REMARK 470 ASN A 140 OD1 ND2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 THR A 162 CG2 REMARK 470 LYS A 174 NZ REMARK 470 PRO A 182 CG CD REMARK 470 ARG A 185 CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CE NZ REMARK 470 GLU A 190 CB CG CD OE1 OE2 REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 GLN A 217 CG CD OE1 NE2 REMARK 470 SER A 218 OG REMARK 470 LYS A 228 CE NZ REMARK 470 ARG A 259 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 260 CG CD OE1 NE2 REMARK 470 ILE A 329 CD1 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 ILE B 6 CB CG1 CG2 CD1 REMARK 470 VAL B 8 CG1 CG2 REMARK 470 ILE B 49 CD1 REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 108 CB CG CD1 CD2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LYS B 127 CE NZ REMARK 470 VAL B 128 CG1 REMARK 470 LYS B 143 CE NZ REMARK 470 GLU B 145 OE2 REMARK 470 LEU B 147 CG CD1 CD2 REMARK 470 VAL B 150 CG1 CG2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 PRO B 163 CG CD REMARK 470 VAL B 175 CG1 CG2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 MET B 180 CG SD CE REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 ASN B 192 CG OD1 ND2 REMARK 470 PRO B 194 CG REMARK 470 VAL B 197 CG1 CG2 REMARK 470 ARG B 200 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 201 CG CD OE1 NE2 REMARK 470 LYS B 214 CE NZ REMARK 470 GLN B 217 CG CD OE1 NE2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 291 CD1 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 ILE B 314 CD1 REMARK 470 VAL B 353 CG1 CG2 REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 TYR B 355 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 0 21.78 -57.64 REMARK 500 PRO A 31 176.22 -54.16 REMARK 500 CYS A 37 46.82 -150.01 REMARK 500 PRO A 46 143.50 -36.17 REMARK 500 PRO A 48 163.33 -47.01 REMARK 500 GLU A 50 48.92 -103.59 REMARK 500 ASN A 67 -176.24 -60.92 REMARK 500 ASN A 160 -157.12 -154.04 REMARK 500 SER A 168 -160.61 -103.26 REMARK 500 ASP A 170 11.94 -140.39 REMARK 500 PRO A 182 -42.96 -29.79 REMARK 500 PHE A 280 49.93 -109.92 REMARK 500 PHE B 7 31.99 75.05 REMARK 500 GLU B 118 -162.56 -100.04 REMARK 500 THR B 160 66.80 -111.95 REMARK 500 VAL B 175 -9.15 -51.49 REMARK 500 PRO B 194 -171.66 -61.62 REMARK 500 SER B 225 -6.08 69.48 REMARK 500 ASP B 354 78.75 -116.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1363 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 121 OD2 REMARK 620 2 UTP A1362 O2A 74.3 REMARK 620 3 UTP A1362 O2B 88.4 56.9 REMARK 620 4 UTP A1362 O1G 143.5 73.3 59.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 1362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1363 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AT7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NF90-NF45 DIMERISATION DOMAIN COMPLEX REMARK 900 RELATED ID: 4AT8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NF90-NF45 DIMERISATION DOMAIN COMPLEX WITH REMARK 900 ATP REMARK 900 RELATED ID: 4ATB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NF90-NF45 DIMERISATION DOMAIN COMPLEX WITH REMARK 900 CTP REMARK 999 REMARK 999 SEQUENCE REMARK 999 TWO RESIDUES ADDED AT N-TERMINUS DERIVED FROM PRESCISSION REMARK 999 CLEAVAGE OF THE EXPRESSION TAG REMARK 999 TWO RESIDUES AT N-TERMINUS DERIVED FROM TEV CLEAVAGE OF THE REMARK 999 EXPRESSION TAG DBREF 4AT9 A 29 390 UNP Q9CXY6 ILF2_MOUSE 29 390 DBREF 4AT9 B 1 381 UNP Q9Z1X4 ILF3_MOUSE 1 381 SEQADV 4AT9 GLY A -1 UNP Q9CXY6 SEE REMARK 999 SEQADV 4AT9 SER A 0 UNP Q9CXY6 SEE REMARK 999 SEQADV 4AT9 GLY B -1 UNP Q45VK5 SEE REMARK 999 SEQADV 4AT9 HIS B 0 UNP Q45VK5 SEE REMARK 999 SEQRES 1 A 364 GLY SER HIS ILE PRO PHE ASP PHE TYR LEU CYS GLU MET SEQRES 2 A 364 ALA PHE PRO ARG VAL LYS PRO ALA PRO ASP GLU THR SER SEQRES 3 A 364 PHE SER GLU ALA LEU LEU LYS ARG ASN GLN ASP LEU ALA SEQRES 4 A 364 PRO ASN SER ALA GLU GLN ALA SER ILE LEU SER LEU VAL SEQRES 5 A 364 THR LYS ILE ASN ASN VAL ILE ASP ASN LEU ILE VAL ALA SEQRES 6 A 364 PRO GLY THR PHE GLU VAL GLN ILE GLU GLU VAL ARG GLN SEQRES 7 A 364 VAL GLY SER TYR LYS LYS GLY THR MET THR THR GLY HIS SEQRES 8 A 364 ASN VAL ALA ASP LEU VAL VAL ILE LEU LYS ILE LEU PRO SEQRES 9 A 364 THR LEU GLU ALA VAL ALA ALA LEU GLY ASN LYS VAL VAL SEQRES 10 A 364 GLU SER LEU ARG ALA GLN ASP PRO SER GLU VAL LEU THR SEQRES 11 A 364 MET LEU THR ASN GLU THR GLY PHE GLU ILE SER SER SER SEQRES 12 A 364 ASP ALA THR VAL LYS ILE LEU ILE THR THR VAL PRO PRO SEQRES 13 A 364 ASN LEU ARG LYS LEU ASP PRO GLU LEU HIS LEU ASP ILE SEQRES 14 A 364 LYS VAL LEU GLN SER ALA LEU ALA ALA ILE ARG HIS ALA SEQRES 15 A 364 ARG TRP PHE GLU GLU ASN ALA SER GLN SER THR VAL LYS SEQRES 16 A 364 VAL LEU ILE ARG LEU LEU LYS ASP LEU ARG ILE ARG PHE SEQRES 17 A 364 PRO GLY PHE GLU PRO LEU THR PRO TRP ILE LEU ASP LEU SEQRES 18 A 364 LEU GLY HIS TYR ALA VAL MET ASN ASN PRO THR ARG GLN SEQRES 19 A 364 PRO LEU ALA LEU ASN VAL ALA TYR ARG ARG CYS LEU GLN SEQRES 20 A 364 ILE LEU ALA ALA GLY LEU PHE LEU PRO GLY SER VAL GLY SEQRES 21 A 364 ILE THR ASP PRO CYS GLU SER GLY ASN PHE ARG VAL HIS SEQRES 22 A 364 THR VAL MET THR LEU GLU GLN GLN ASP MET VAL CYS TYR SEQRES 23 A 364 THR ALA GLN THR LEU VAL ARG ILE LEU SER HIS GLY GLY SEQRES 24 A 364 PHE ARG LYS ILE LEU GLY GLN GLU GLY ASP ALA SER TYR SEQRES 25 A 364 LEU ALA SER GLU ILE SER THR TRP ASP GLY VAL ILE VAL SEQRES 26 A 364 THR PRO SER GLU LYS ALA TYR GLU LYS PRO PRO GLU LYS SEQRES 27 A 364 LYS GLU GLY GLU GLU GLU GLU GLU ASN THR GLU GLU PRO SEQRES 28 A 364 PRO GLN GLY GLU GLU GLU GLU SER MET GLU THR GLN GLU SEQRES 1 B 383 GLY HIS MET ARG PRO MET ARG ILE PHE VAL ASN ASP ASP SEQRES 2 B 383 ARG HIS VAL MET ALA LYS HIS SER SER VAL TYR PRO THR SEQRES 3 B 383 GLN GLU GLU LEU GLU ALA VAL GLN ASN MET VAL SER HIS SEQRES 4 B 383 THR GLU ARG ALA LEU LYS ALA VAL SER ASP TRP ILE ASP SEQRES 5 B 383 GLU GLN GLU LYS GLY ASN SER GLU LEU SER GLU ALA GLU SEQRES 6 B 383 ASN MET ASP THR PRO PRO ASP ASP GLU SER LYS GLU GLY SEQRES 7 B 383 ALA GLY GLU GLN LYS ALA GLU HIS MET THR ARG THR LEU SEQRES 8 B 383 ARG GLY VAL MET ARG VAL GLY LEU VAL ALA LYS GLY LEU SEQRES 9 B 383 LEU LEU LYS GLY ASP LEU ASP LEU GLU LEU VAL LEU LEU SEQRES 10 B 383 CYS LYS GLU LYS PRO THR THR ALA LEU LEU ASP LYS VAL SEQRES 11 B 383 ALA ASP ASN LEU ALA ILE GLN LEU THR THR VAL THR GLU SEQRES 12 B 383 ASP LYS TYR GLU ILE LEU GLN SER VAL ASP ASP ALA ALA SEQRES 13 B 383 ILE VAL ILE LYS ASN THR LYS GLU PRO PRO LEU SER LEU SEQRES 14 B 383 THR ILE HIS LEU THR SER PRO VAL VAL ARG GLU GLU MET SEQRES 15 B 383 GLU LYS VAL LEU ALA GLY GLU THR LEU SER VAL ASN ASP SEQRES 16 B 383 PRO PRO ASP VAL LEU ASP ARG GLN LYS CYS LEU ALA ALA SEQRES 17 B 383 LEU ALA SER LEU ARG HIS ALA LYS TRP PHE GLN ALA ARG SEQRES 18 B 383 ALA ASN GLY LEU LYS SER CYS VAL ILE VAL ILE ARG VAL SEQRES 19 B 383 LEU ARG ASP LEU CYS THR ARG VAL PRO THR TRP GLY PRO SEQRES 20 B 383 LEU ARG GLY TRP PRO LEU GLU LEU LEU CYS GLU LYS SER SEQRES 21 B 383 ILE GLY THR ALA ASN ARG PRO MET GLY ALA GLY GLU ALA SEQRES 22 B 383 LEU ARG ARG VAL LEU GLU CYS LEU ALA SER GLY ILE VAL SEQRES 23 B 383 MET PRO ASP GLY SER GLY ILE TYR ASP PRO CYS GLU LYS SEQRES 24 B 383 GLU ALA THR ASP ALA ILE GLY HIS LEU ASP ARG GLN GLN SEQRES 25 B 383 ARG GLU ASP ILE THR GLN SER ALA GLN HIS ALA LEU ARG SEQRES 26 B 383 LEU ALA ALA PHE GLY GLN LEU HIS LYS VAL LEU GLY MET SEQRES 27 B 383 ASP PRO LEU PRO SER LYS MET PRO LYS LYS PRO LYS ASN SEQRES 28 B 383 GLU ASN PRO VAL ASP TYR THR VAL GLN ILE PRO PRO SER SEQRES 29 B 383 THR THR TYR ALA ILE THR PRO MET LYS ARG PRO MET GLU SEQRES 30 B 383 GLU ASP GLY GLU GLU LYS HET UTP A1362 29 HET MG A1363 1 HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 UTP C9 H15 N2 O15 P3 FORMUL 4 MG MG 2+ HELIX 1 1 ASP A 33 CYS A 37 5 5 HELIX 2 2 CYS A 37 PHE A 41 5 5 HELIX 3 3 GLU A 50 ALA A 65 1 16 HELIX 4 4 ASN A 67 ALA A 91 1 25 HELIX 5 5 GLY A 106 GLY A 111 1 6 HELIX 6 6 THR A 131 ASP A 150 1 20 HELIX 7 7 PRO A 181 LEU A 184 5 4 HELIX 8 8 ASP A 194 ALA A 215 1 22 HELIX 9 9 GLN A 217 PHE A 234 1 18 HELIX 10 10 PRO A 235 GLU A 238 5 4 HELIX 11 11 THR A 241 ASN A 255 1 15 HELIX 12 12 TYR A 268 ALA A 277 1 10 HELIX 13 13 VAL A 298 MET A 302 5 5 HELIX 14 14 THR A 303 HIS A 323 1 21 HELIX 15 15 GLY A 325 LEU A 330 1 6 HELIX 16 16 ALA A 336 SER A 341 5 6 HELIX 17 17 PHE B 7 TYR B 22 1 16 HELIX 18 18 THR B 24 GLY B 55 1 32 HELIX 19 19 VAL B 95 GLY B 101 1 7 HELIX 20 20 THR B 121 THR B 137 1 17 HELIX 21 21 PRO B 174 LYS B 182 1 9 HELIX 22 22 ASP B 199 ALA B 220 1 22 HELIX 23 23 SER B 225 VAL B 240 1 16 HELIX 24 24 TRP B 243 ARG B 247 5 5 HELIX 25 25 GLY B 248 THR B 261 1 14 HELIX 26 26 GLY B 267 SER B 281 1 15 HELIX 27 27 ASP B 307 PHE B 327 1 21 HELIX 28 28 GLN B 329 LEU B 334 1 6 SHEET 1 AA 5 ILE A 99 VAL A 105 0 SHEET 2 AA 5 VAL A 119 LEU A 126 -1 O ASP A 121 N VAL A 105 SHEET 3 AA 5 THR A 172 THR A 179 1 O THR A 172 N ALA A 120 SHEET 4 AA 5 GLY A 163 SER A 167 -1 O PHE A 164 N ILE A 175 SHEET 5 AA 5 THR A 156 THR A 159 -1 O THR A 156 N SER A 167 SHEET 1 AB 2 SER A 344 TRP A 346 0 SHEET 2 AB 2 VAL A 349 VAL A 351 -1 O VAL A 349 N TRP A 346 SHEET 1 BA 5 LEU B 89 ARG B 94 0 SHEET 2 BA 5 ASP B 109 CYS B 116 -1 O VAL B 113 N MET B 93 SHEET 3 BA 5 SER B 166 THR B 172 1 O SER B 166 N LEU B 110 SHEET 4 BA 5 ALA B 154 ASN B 159 -1 O ILE B 155 N ILE B 169 SHEET 5 BA 5 TYR B 144 SER B 149 -1 O GLU B 145 N LYS B 158 LINK OD2 ASP A 121 MG MG A1363 1555 1555 2.33 LINK O2A UTP A1362 MG MG A1363 1555 1555 2.39 LINK O2B UTP A1362 MG MG A1363 1555 1555 2.75 LINK O1G UTP A1362 MG MG A1363 1555 1555 2.00 CISPEP 1 SER A 293 GLY A 294 0 -4.26 CISPEP 2 GLU B 162 PRO B 163 0 -2.10 SITE 1 AC1 8 GLY A 106 SER A 107 ASP A 121 LEU A 176 SITE 2 AC1 8 SER A 200 ALA A 201 ALA A 204 MG A1363 SITE 1 AC2 3 VAL A 119 ASP A 121 UTP A1362 CRYST1 83.849 133.516 177.983 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005619 0.00000