data_4ATH # _entry.id 4ATH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ATH PDBE EBI-50725 WWPDB D_1290050725 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4ATI unspecified 'MITF:M-BOX COMPLEX' PDB 4ATK unspecified 'MITF:E-BOX COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ATH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-05-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pogenberg, V.' 1 'Milewski, M.' 2 'Wilmanns, M.' 3 # _citation.id primary _citation.title 'Restricted Leucine Zipper Dimerization and Specificity of DNA Recognition of the Melanocyte Master Regulator Mitf' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 26 _citation.page_first 2647 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23207919 _citation.pdbx_database_id_DOI 10.1101/GAD.198192.112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pogenberg, V.' 1 ? primary 'Hogmundsdottir, M.' 2 ? primary 'Bergsteinsdottir, K.' 3 ? primary 'Schepsky, A.' 4 ? primary 'Phung, B.' 5 ? primary 'Deineko, V.' 6 ? primary 'Milewski, M.' 7 ? primary 'Steingrimsson, E.' 8 ? primary 'Wilmanns, M.' 9 ? # _cell.entry_id 4ATH _cell.length_a 53.375 _cell.length_b 39.891 _cell.length_c 55.160 _cell.angle_alpha 90.00 _cell.angle_beta 117.28 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ATH _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR' 9993.066 2 ? ? 'DNA-BINDING DOMAIN, RESIDUES 217-296' ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 water nat water 18.015 153 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name MITF # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GA(MSE)RFNINDRIKELGTLIPKSNDPD(MSE)RWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRV QELE(MSE)QARAHG ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQAR AHG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MSE n 1 4 ARG n 1 5 PHE n 1 6 ASN n 1 7 ILE n 1 8 ASN n 1 9 ASP n 1 10 ARG n 1 11 ILE n 1 12 LYS n 1 13 GLU n 1 14 LEU n 1 15 GLY n 1 16 THR n 1 17 LEU n 1 18 ILE n 1 19 PRO n 1 20 LYS n 1 21 SER n 1 22 ASN n 1 23 ASP n 1 24 PRO n 1 25 ASP n 1 26 MSE n 1 27 ARG n 1 28 TRP n 1 29 ASN n 1 30 LYS n 1 31 GLY n 1 32 THR n 1 33 ILE n 1 34 LEU n 1 35 LYS n 1 36 ALA n 1 37 SER n 1 38 VAL n 1 39 ASP n 1 40 TYR n 1 41 ILE n 1 42 ARG n 1 43 LYS n 1 44 LEU n 1 45 GLN n 1 46 ARG n 1 47 GLU n 1 48 GLN n 1 49 GLN n 1 50 ARG n 1 51 ALA n 1 52 LYS n 1 53 ASP n 1 54 LEU n 1 55 GLU n 1 56 ASN n 1 57 ARG n 1 58 GLN n 1 59 LYS n 1 60 LYS n 1 61 LEU n 1 62 GLU n 1 63 HIS n 1 64 ALA n 1 65 ASN n 1 66 ARG n 1 67 HIS n 1 68 LEU n 1 69 LEU n 1 70 LEU n 1 71 ARG n 1 72 VAL n 1 73 GLN n 1 74 GLU n 1 75 LEU n 1 76 GLU n 1 77 MSE n 1 78 GLN n 1 79 ALA n 1 80 ARG n 1 81 ALA n 1 82 HIS n 1 83 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant RIL _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PETM11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MITF_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q08874 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ATH A 4 ? 83 ? Q08874 217 ? 296 ? 217 296 2 1 4ATH B 4 ? 83 ? Q08874 217 ? 296 ? 217 296 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ATH GLY A 1 ? UNP Q08874 ? ? 'expression tag' 214 1 1 4ATH ALA A 2 ? UNP Q08874 ? ? 'expression tag' 215 2 1 4ATH MSE A 3 ? UNP Q08874 ? ? 'expression tag' 216 3 2 4ATH GLY B 1 ? UNP Q08874 ? ? 'expression tag' 214 4 2 4ATH ALA B 2 ? UNP Q08874 ? ? 'expression tag' 215 5 2 4ATH MSE B 3 ? UNP Q08874 ? ? 'expression tag' 216 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ATH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 52.89 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.5 M AMMONIUM SULFATE AND 150 MM SODIUM ACETATE (PH 5.0)' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARRESEARCH SX-165' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'MULTILAYER MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.965 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength 0.965 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4ATH _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.00 _reflns.d_resolution_high 1.95 _reflns.number_obs 14742 _reflns.number_all ? _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs 0.13 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.20 _reflns.B_iso_Wilson_estimate 25 _reflns.pdbx_redundancy 6.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.06 _reflns_shell.percent_possible_all 86.8 _reflns_shell.Rmerge_I_obs 0.54 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.20 _reflns_shell.pdbx_redundancy 5.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ATH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13993 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.03 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 96.29 _refine.ls_R_factor_obs 0.19566 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19399 _refine.ls_R_factor_R_free 0.22778 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 733 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.917 _refine.B_iso_mean 29.966 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] -0.55 _refine.aniso_B[3][3] 2.56 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 2.20 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.177 _refine.pdbx_overall_ESU_R_Free 0.154 _refine.overall_SU_ML 0.113 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.492 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1329 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 153 _refine_hist.number_atoms_total 1507 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 49.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1443 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.148 1.968 ? 1942 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.258 5.000 ? 175 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.861 23.210 ? 81 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.758 15.000 ? 298 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.156 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.074 0.200 ? 201 'X-RAY DIFFRACTION' ? r_gen_planes_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.586 1.500 ? 837 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.089 2.000 ? 1346 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.033 3.000 ? 606 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.316 4.500 ? 591 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.001 _refine_ls_shell.number_reflns_R_work 887 _refine_ls_shell.R_factor_R_work 0.295 _refine_ls_shell.percent_reflns_obs 83.13 _refine_ls_shell.R_factor_R_free 0.275 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4ATH _struct.title 'MITF apo structure' _struct.pdbx_descriptor 'MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ATH _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA BINDING PROTEIN, TRANSCRIPTION FACTOR, MELANOMA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 3 ? ILE A 18 ? MSE A 216 ILE A 231 1 ? 16 HELX_P HELX_P2 2 ASN A 29 ? GLU A 47 ? ASN A 242 GLU A 260 1 ? 19 HELX_P HELX_P3 3 GLU A 47 ? HIS A 82 ? GLU A 260 HIS A 295 1 ? 36 HELX_P HELX_P4 4 GLY B 1 ? ILE B 18 ? GLY B 214 ILE B 231 1 ? 18 HELX_P HELX_P5 5 ASN B 29 ? HIS B 82 ? ASN B 242 HIS B 295 1 ? 54 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MSE 3 C ? ? ? 1_555 A ARG 4 N ? ? A MSE 216 A ARG 217 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale both ? A MSE 26 N ? ? ? 1_555 A ASP 25 C ? ? A MSE 239 A ASP 238 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale both ? A MSE 26 C ? ? ? 1_555 A ARG 27 N ? ? A MSE 239 A ARG 240 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale both ? A MSE 77 N ? ? ? 1_555 A GLU 76 C ? ? A MSE 290 A GLU 289 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale both ? A MSE 77 C ? ? ? 1_555 A GLN 78 N ? ? A MSE 290 A GLN 291 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale both ? B MSE 3 C ? ? ? 1_555 B ARG 4 N ? ? B MSE 216 B ARG 217 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale both ? B MSE 3 N ? ? ? 1_555 B ALA 2 C ? ? B MSE 216 B ALA 215 1_555 ? ? ? ? ? ? ? 1.335 ? covale8 covale both ? B MSE 26 C ? ? ? 1_555 B ARG 27 N ? ? B MSE 239 B ARG 240 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale both ? B MSE 26 N ? ? ? 1_555 B ASP 25 C ? ? B MSE 239 B ASP 238 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale both ? B MSE 77 C ? ? ? 1_555 B GLN 78 N ? ? B MSE 290 B GLN 291 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale both ? B MSE 77 N ? ? ? 1_555 B GLU 76 C ? ? B MSE 290 B GLU 289 1_555 ? ? ? ? ? ? ? 1.337 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1296' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 B 1296' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 B 1297' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 B 1298' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 B 1299' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 63 ? HIS A 276 . ? 1_555 ? 2 AC1 5 ARG A 66 ? ARG A 279 . ? 1_555 ? 3 AC1 5 HIS A 67 ? HIS A 280 . ? 1_555 ? 4 AC1 5 HOH H . ? HOH A 2049 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH A 2069 . ? 1_555 ? 6 AC2 6 MSE A 77 ? MSE A 290 . ? 1_655 ? 7 AC2 6 ARG A 80 ? ARG A 293 . ? 1_655 ? 8 AC2 6 HOH H . ? HOH A 2058 . ? 1_655 ? 9 AC2 6 PRO B 19 ? PRO B 232 . ? 1_555 ? 10 AC2 6 LYS B 20 ? LYS B 233 . ? 1_555 ? 11 AC2 6 SER B 21 ? SER B 234 . ? 1_555 ? 12 AC3 3 ASN B 29 ? ASN B 242 . ? 1_555 ? 13 AC3 3 LYS B 30 ? LYS B 243 . ? 1_555 ? 14 AC3 3 HOH I . ? HOH B 2027 . ? 1_555 ? 15 AC4 4 LYS B 43 ? LYS B 256 . ? 1_555 ? 16 AC4 4 ARG B 46 ? ARG B 259 . ? 1_555 ? 17 AC4 4 GLU B 47 ? GLU B 260 . ? 1_555 ? 18 AC4 4 ARG B 50 ? ARG B 263 . ? 1_555 ? 19 AC5 2 HIS B 63 ? HIS B 276 . ? 1_555 ? 20 AC5 2 ARG B 66 ? ARG B 279 . ? 1_555 ? # _database_PDB_matrix.entry_id 4ATH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ATH _atom_sites.fract_transf_matrix[1][1] 0.018735 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009662 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025068 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020398 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 214 ? ? ? A . n A 1 2 ALA 2 215 ? ? ? A . n A 1 3 MSE 3 216 216 MSE MSE A . n A 1 4 ARG 4 217 217 ARG ARG A . n A 1 5 PHE 5 218 218 PHE PHE A . n A 1 6 ASN 6 219 219 ASN ASN A . n A 1 7 ILE 7 220 220 ILE ILE A . n A 1 8 ASN 8 221 221 ASN ASN A . n A 1 9 ASP 9 222 222 ASP ASP A . n A 1 10 ARG 10 223 223 ARG ARG A . n A 1 11 ILE 11 224 224 ILE ILE A . n A 1 12 LYS 12 225 225 LYS LYS A . n A 1 13 GLU 13 226 226 GLU GLU A . n A 1 14 LEU 14 227 227 LEU LEU A . n A 1 15 GLY 15 228 228 GLY GLY A . n A 1 16 THR 16 229 229 THR THR A . n A 1 17 LEU 17 230 230 LEU LEU A . n A 1 18 ILE 18 231 231 ILE ILE A . n A 1 19 PRO 19 232 232 PRO PRO A . n A 1 20 LYS 20 233 233 LYS LYS A . n A 1 21 SER 21 234 234 SER SER A . n A 1 22 ASN 22 235 235 ASN ASN A . n A 1 23 ASP 23 236 236 ASP ASP A . n A 1 24 PRO 24 237 237 PRO PRO A . n A 1 25 ASP 25 238 238 ASP ASP A . n A 1 26 MSE 26 239 239 MSE MSE A . n A 1 27 ARG 27 240 240 ARG ARG A . n A 1 28 TRP 28 241 241 TRP TRP A . n A 1 29 ASN 29 242 242 ASN ASN A . n A 1 30 LYS 30 243 243 LYS LYS A . n A 1 31 GLY 31 244 244 GLY GLY A . n A 1 32 THR 32 245 245 THR THR A . n A 1 33 ILE 33 246 246 ILE ILE A . n A 1 34 LEU 34 247 247 LEU LEU A . n A 1 35 LYS 35 248 248 LYS LYS A . n A 1 36 ALA 36 249 249 ALA ALA A . n A 1 37 SER 37 250 250 SER SER A . n A 1 38 VAL 38 251 251 VAL VAL A . n A 1 39 ASP 39 252 252 ASP ASP A . n A 1 40 TYR 40 253 253 TYR TYR A . n A 1 41 ILE 41 254 254 ILE ILE A . n A 1 42 ARG 42 255 255 ARG ARG A . n A 1 43 LYS 43 256 256 LYS LYS A . n A 1 44 LEU 44 257 257 LEU LEU A . n A 1 45 GLN 45 258 258 GLN GLN A . n A 1 46 ARG 46 259 259 ARG ARG A . n A 1 47 GLU 47 260 260 GLU GLU A . n A 1 48 GLN 48 261 261 GLN GLN A . n A 1 49 GLN 49 262 262 GLN GLN A . n A 1 50 ARG 50 263 263 ARG ARG A . n A 1 51 ALA 51 264 264 ALA ALA A . n A 1 52 LYS 52 265 265 LYS LYS A . n A 1 53 ASP 53 266 266 ASP ASP A . n A 1 54 LEU 54 267 267 LEU LEU A . n A 1 55 GLU 55 268 268 GLU GLU A . n A 1 56 ASN 56 269 269 ASN ASN A . n A 1 57 ARG 57 270 270 ARG ARG A . n A 1 58 GLN 58 271 271 GLN GLN A . n A 1 59 LYS 59 272 272 LYS LYS A . n A 1 60 LYS 60 273 273 LYS LYS A . n A 1 61 LEU 61 274 274 LEU LEU A . n A 1 62 GLU 62 275 275 GLU GLU A . n A 1 63 HIS 63 276 276 HIS HIS A . n A 1 64 ALA 64 277 277 ALA ALA A . n A 1 65 ASN 65 278 278 ASN ASN A . n A 1 66 ARG 66 279 279 ARG ARG A . n A 1 67 HIS 67 280 280 HIS HIS A . n A 1 68 LEU 68 281 281 LEU LEU A . n A 1 69 LEU 69 282 282 LEU LEU A . n A 1 70 LEU 70 283 283 LEU LEU A . n A 1 71 ARG 71 284 284 ARG ARG A . n A 1 72 VAL 72 285 285 VAL VAL A . n A 1 73 GLN 73 286 286 GLN GLN A . n A 1 74 GLU 74 287 287 GLU GLU A . n A 1 75 LEU 75 288 288 LEU LEU A . n A 1 76 GLU 76 289 289 GLU GLU A . n A 1 77 MSE 77 290 290 MSE MSE A . n A 1 78 GLN 78 291 291 GLN GLN A . n A 1 79 ALA 79 292 292 ALA ALA A . n A 1 80 ARG 80 293 293 ARG ARG A . n A 1 81 ALA 81 294 294 ALA ALA A . n A 1 82 HIS 82 295 295 HIS HIS A . n A 1 83 GLY 83 296 ? ? ? A . n B 1 1 GLY 1 214 214 GLY GLY B . n B 1 2 ALA 2 215 215 ALA ALA B . n B 1 3 MSE 3 216 216 MSE MSE B . n B 1 4 ARG 4 217 217 ARG ARG B . n B 1 5 PHE 5 218 218 PHE PHE B . n B 1 6 ASN 6 219 219 ASN ASN B . n B 1 7 ILE 7 220 220 ILE ILE B . n B 1 8 ASN 8 221 221 ASN ASN B . n B 1 9 ASP 9 222 222 ASP ASP B . n B 1 10 ARG 10 223 223 ARG ARG B . n B 1 11 ILE 11 224 224 ILE ILE B . n B 1 12 LYS 12 225 225 LYS LYS B . n B 1 13 GLU 13 226 226 GLU GLU B . n B 1 14 LEU 14 227 227 LEU LEU B . n B 1 15 GLY 15 228 228 GLY GLY B . n B 1 16 THR 16 229 229 THR THR B . n B 1 17 LEU 17 230 230 LEU LEU B . n B 1 18 ILE 18 231 231 ILE ILE B . n B 1 19 PRO 19 232 232 PRO PRO B . n B 1 20 LYS 20 233 233 LYS LYS B . n B 1 21 SER 21 234 234 SER SER B . n B 1 22 ASN 22 235 235 ASN ASN B . n B 1 23 ASP 23 236 236 ASP ASP B . n B 1 24 PRO 24 237 237 PRO PRO B . n B 1 25 ASP 25 238 238 ASP ASP B . n B 1 26 MSE 26 239 239 MSE MSE B . n B 1 27 ARG 27 240 240 ARG ARG B . n B 1 28 TRP 28 241 241 TRP TRP B . n B 1 29 ASN 29 242 242 ASN ASN B . n B 1 30 LYS 30 243 243 LYS LYS B . n B 1 31 GLY 31 244 244 GLY GLY B . n B 1 32 THR 32 245 245 THR THR B . n B 1 33 ILE 33 246 246 ILE ILE B . n B 1 34 LEU 34 247 247 LEU LEU B . n B 1 35 LYS 35 248 248 LYS LYS B . n B 1 36 ALA 36 249 249 ALA ALA B . n B 1 37 SER 37 250 250 SER SER B . n B 1 38 VAL 38 251 251 VAL VAL B . n B 1 39 ASP 39 252 252 ASP ASP B . n B 1 40 TYR 40 253 253 TYR TYR B . n B 1 41 ILE 41 254 254 ILE ILE B . n B 1 42 ARG 42 255 255 ARG ARG B . n B 1 43 LYS 43 256 256 LYS LYS B . n B 1 44 LEU 44 257 257 LEU LEU B . n B 1 45 GLN 45 258 258 GLN GLN B . n B 1 46 ARG 46 259 259 ARG ARG B . n B 1 47 GLU 47 260 260 GLU GLU B . n B 1 48 GLN 48 261 261 GLN GLN B . n B 1 49 GLN 49 262 262 GLN GLN B . n B 1 50 ARG 50 263 263 ARG ARG B . n B 1 51 ALA 51 264 264 ALA ALA B . n B 1 52 LYS 52 265 265 LYS LYS B . n B 1 53 ASP 53 266 266 ASP ASP B . n B 1 54 LEU 54 267 267 LEU LEU B . n B 1 55 GLU 55 268 268 GLU GLU B . n B 1 56 ASN 56 269 269 ASN ASN B . n B 1 57 ARG 57 270 270 ARG ARG B . n B 1 58 GLN 58 271 271 GLN GLN B . n B 1 59 LYS 59 272 272 LYS LYS B . n B 1 60 LYS 60 273 273 LYS LYS B . n B 1 61 LEU 61 274 274 LEU LEU B . n B 1 62 GLU 62 275 275 GLU GLU B . n B 1 63 HIS 63 276 276 HIS HIS B . n B 1 64 ALA 64 277 277 ALA ALA B . n B 1 65 ASN 65 278 278 ASN ASN B . n B 1 66 ARG 66 279 279 ARG ARG B . n B 1 67 HIS 67 280 280 HIS HIS B . n B 1 68 LEU 68 281 281 LEU LEU B . n B 1 69 LEU 69 282 282 LEU LEU B . n B 1 70 LEU 70 283 283 LEU LEU B . n B 1 71 ARG 71 284 284 ARG ARG B . n B 1 72 VAL 72 285 285 VAL VAL B . n B 1 73 GLN 73 286 286 GLN GLN B . n B 1 74 GLU 74 287 287 GLU GLU B . n B 1 75 LEU 75 288 288 LEU LEU B . n B 1 76 GLU 76 289 289 GLU GLU B . n B 1 77 MSE 77 290 290 MSE MSE B . n B 1 78 GLN 78 291 291 GLN GLN B . n B 1 79 ALA 79 292 292 ALA ALA B . n B 1 80 ARG 80 293 293 ARG ARG B . n B 1 81 ALA 81 294 294 ALA ALA B . n B 1 82 HIS 82 295 295 HIS HIS B . n B 1 83 GLY 83 296 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 1296 1296 SO4 SO4 A . D 2 SO4 1 1296 1296 SO4 SO4 B . E 2 SO4 1 1297 1297 SO4 SO4 B . F 2 SO4 1 1298 1298 SO4 SO4 B . G 2 SO4 1 1299 1299 SO4 SO4 B . H 3 HOH 1 2001 2001 HOH HOH A . H 3 HOH 2 2002 2002 HOH HOH A . H 3 HOH 3 2003 2003 HOH HOH A . H 3 HOH 4 2004 2004 HOH HOH A . H 3 HOH 5 2005 2005 HOH HOH A . H 3 HOH 6 2006 2006 HOH HOH A . H 3 HOH 7 2007 2007 HOH HOH A . H 3 HOH 8 2008 2008 HOH HOH A . H 3 HOH 9 2009 2009 HOH HOH A . H 3 HOH 10 2010 2010 HOH HOH A . H 3 HOH 11 2011 2011 HOH HOH A . H 3 HOH 12 2012 2012 HOH HOH A . H 3 HOH 13 2013 2013 HOH HOH A . H 3 HOH 14 2014 2014 HOH HOH A . H 3 HOH 15 2015 2015 HOH HOH A . H 3 HOH 16 2016 2016 HOH HOH A . H 3 HOH 17 2017 2017 HOH HOH A . H 3 HOH 18 2018 2018 HOH HOH A . H 3 HOH 19 2019 2019 HOH HOH A . H 3 HOH 20 2020 2020 HOH HOH A . H 3 HOH 21 2021 2021 HOH HOH A . H 3 HOH 22 2022 2022 HOH HOH A . H 3 HOH 23 2023 2023 HOH HOH A . H 3 HOH 24 2024 2024 HOH HOH A . H 3 HOH 25 2025 2025 HOH HOH A . H 3 HOH 26 2026 2026 HOH HOH A . H 3 HOH 27 2027 2027 HOH HOH A . H 3 HOH 28 2028 2028 HOH HOH A . H 3 HOH 29 2029 2029 HOH HOH A . H 3 HOH 30 2030 2030 HOH HOH A . H 3 HOH 31 2031 2031 HOH HOH A . H 3 HOH 32 2032 2032 HOH HOH A . H 3 HOH 33 2033 2033 HOH HOH A . H 3 HOH 34 2034 2034 HOH HOH A . H 3 HOH 35 2035 2035 HOH HOH A . H 3 HOH 36 2036 2036 HOH HOH A . H 3 HOH 37 2037 2037 HOH HOH A . H 3 HOH 38 2038 2038 HOH HOH A . H 3 HOH 39 2039 2039 HOH HOH A . H 3 HOH 40 2040 2040 HOH HOH A . H 3 HOH 41 2041 2041 HOH HOH A . H 3 HOH 42 2042 2042 HOH HOH A . H 3 HOH 43 2043 2043 HOH HOH A . H 3 HOH 44 2044 2044 HOH HOH A . H 3 HOH 45 2045 2045 HOH HOH A . H 3 HOH 46 2046 2046 HOH HOH A . H 3 HOH 47 2047 2047 HOH HOH A . H 3 HOH 48 2048 2048 HOH HOH A . H 3 HOH 49 2049 2049 HOH HOH A . H 3 HOH 50 2050 2050 HOH HOH A . H 3 HOH 51 2051 2051 HOH HOH A . H 3 HOH 52 2052 2052 HOH HOH A . H 3 HOH 53 2053 2053 HOH HOH A . H 3 HOH 54 2054 2054 HOH HOH A . H 3 HOH 55 2055 2055 HOH HOH A . H 3 HOH 56 2056 2056 HOH HOH A . H 3 HOH 57 2057 2057 HOH HOH A . H 3 HOH 58 2058 2058 HOH HOH A . H 3 HOH 59 2059 2059 HOH HOH A . H 3 HOH 60 2060 2060 HOH HOH A . H 3 HOH 61 2061 2061 HOH HOH A . H 3 HOH 62 2062 2062 HOH HOH A . H 3 HOH 63 2063 2063 HOH HOH A . H 3 HOH 64 2064 2064 HOH HOH A . H 3 HOH 65 2065 2065 HOH HOH A . H 3 HOH 66 2066 2066 HOH HOH A . H 3 HOH 67 2067 2067 HOH HOH A . H 3 HOH 68 2068 2068 HOH HOH A . H 3 HOH 69 2069 2069 HOH HOH A . H 3 HOH 70 2070 2070 HOH HOH A . H 3 HOH 71 2071 2071 HOH HOH A . H 3 HOH 72 2072 2072 HOH HOH A . H 3 HOH 73 2073 2073 HOH HOH A . H 3 HOH 74 2074 2074 HOH HOH A . I 3 HOH 1 2001 2001 HOH HOH B . I 3 HOH 2 2002 2002 HOH HOH B . I 3 HOH 3 2003 2003 HOH HOH B . I 3 HOH 4 2004 2004 HOH HOH B . I 3 HOH 5 2005 2005 HOH HOH B . I 3 HOH 6 2006 2006 HOH HOH B . I 3 HOH 7 2007 2007 HOH HOH B . I 3 HOH 8 2008 2008 HOH HOH B . I 3 HOH 9 2009 2009 HOH HOH B . I 3 HOH 10 2010 2010 HOH HOH B . I 3 HOH 11 2011 2011 HOH HOH B . I 3 HOH 12 2012 2012 HOH HOH B . I 3 HOH 13 2013 2013 HOH HOH B . I 3 HOH 14 2014 2014 HOH HOH B . I 3 HOH 15 2015 2015 HOH HOH B . I 3 HOH 16 2016 2016 HOH HOH B . I 3 HOH 17 2017 2017 HOH HOH B . I 3 HOH 18 2018 2018 HOH HOH B . I 3 HOH 19 2019 2019 HOH HOH B . I 3 HOH 20 2020 2020 HOH HOH B . I 3 HOH 21 2021 2021 HOH HOH B . I 3 HOH 22 2022 2022 HOH HOH B . I 3 HOH 23 2023 2023 HOH HOH B . I 3 HOH 24 2024 2024 HOH HOH B . I 3 HOH 25 2025 2025 HOH HOH B . I 3 HOH 26 2026 2026 HOH HOH B . I 3 HOH 27 2027 2027 HOH HOH B . I 3 HOH 28 2028 2028 HOH HOH B . I 3 HOH 29 2029 2029 HOH HOH B . I 3 HOH 30 2030 2030 HOH HOH B . I 3 HOH 31 2031 2031 HOH HOH B . I 3 HOH 32 2032 2032 HOH HOH B . I 3 HOH 33 2033 2033 HOH HOH B . I 3 HOH 34 2034 2034 HOH HOH B . I 3 HOH 35 2035 2035 HOH HOH B . I 3 HOH 36 2036 2036 HOH HOH B . I 3 HOH 37 2037 2037 HOH HOH B . I 3 HOH 38 2038 2038 HOH HOH B . I 3 HOH 39 2039 2039 HOH HOH B . I 3 HOH 40 2040 2040 HOH HOH B . I 3 HOH 41 2041 2041 HOH HOH B . I 3 HOH 42 2042 2042 HOH HOH B . I 3 HOH 43 2043 2043 HOH HOH B . I 3 HOH 44 2044 2044 HOH HOH B . I 3 HOH 45 2045 2045 HOH HOH B . I 3 HOH 46 2046 2046 HOH HOH B . I 3 HOH 47 2047 2047 HOH HOH B . I 3 HOH 48 2048 2048 HOH HOH B . I 3 HOH 49 2049 2049 HOH HOH B . I 3 HOH 50 2050 2050 HOH HOH B . I 3 HOH 51 2051 2051 HOH HOH B . I 3 HOH 52 2052 2052 HOH HOH B . I 3 HOH 53 2053 2053 HOH HOH B . I 3 HOH 54 2054 2054 HOH HOH B . I 3 HOH 55 2055 2055 HOH HOH B . I 3 HOH 56 2056 2056 HOH HOH B . I 3 HOH 57 2057 2057 HOH HOH B . I 3 HOH 58 2058 2058 HOH HOH B . I 3 HOH 59 2059 2059 HOH HOH B . I 3 HOH 60 2060 2060 HOH HOH B . I 3 HOH 61 2061 2061 HOH HOH B . I 3 HOH 62 2062 2062 HOH HOH B . I 3 HOH 63 2063 2063 HOH HOH B . I 3 HOH 64 2064 2064 HOH HOH B . I 3 HOH 65 2065 2065 HOH HOH B . I 3 HOH 66 2066 2066 HOH HOH B . I 3 HOH 67 2067 2067 HOH HOH B . I 3 HOH 68 2068 2068 HOH HOH B . I 3 HOH 69 2069 2069 HOH HOH B . I 3 HOH 70 2070 2070 HOH HOH B . I 3 HOH 71 2071 2071 HOH HOH B . I 3 HOH 72 2072 2072 HOH HOH B . I 3 HOH 73 2073 2073 HOH HOH B . I 3 HOH 74 2074 2074 HOH HOH B . I 3 HOH 75 2075 2075 HOH HOH B . I 3 HOH 76 2076 2076 HOH HOH B . I 3 HOH 77 2077 2077 HOH HOH B . I 3 HOH 78 2078 2078 HOH HOH B . I 3 HOH 79 2079 2079 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 216 ? MET SELENOMETHIONINE 2 A MSE 26 A MSE 239 ? MET SELENOMETHIONINE 3 A MSE 77 A MSE 290 ? MET SELENOMETHIONINE 4 B MSE 3 B MSE 216 ? MET SELENOMETHIONINE 5 B MSE 26 B MSE 239 ? MET SELENOMETHIONINE 6 B MSE 77 B MSE 290 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4330 ? 1 MORE -81.8 ? 1 'SSA (A^2)' 11910 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-12 2 'Structure model' 1 1 2012-12-19 3 'Structure model' 1 2 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 50.1701 33.2246 -24.9490 0.3471 0.3459 0.2167 0.0780 0.0398 0.0477 4.6400 0.9923 1.3982 -0.4839 -0.6923 0.7206 -0.0071 0.7093 -0.3807 -0.1749 -0.0393 -0.1522 0.3491 0.2200 0.0465 'X-RAY DIFFRACTION' 2 ? refined 47.2862 48.7783 -24.6934 0.3400 0.4574 0.5504 -0.0204 0.0107 0.2167 1.9689 0.1108 0.3057 -0.1198 -0.4138 0.0750 0.1271 0.5923 0.9494 -0.1329 0.0243 -0.1078 -0.2270 0.0420 -0.1514 'X-RAY DIFFRACTION' 3 ? refined 45.2965 43.4263 -13.9358 0.1310 0.1355 0.2119 0.0270 -0.0191 0.0454 5.4925 2.4270 3.2741 0.2291 -1.2043 -0.3032 0.0972 0.0821 0.5601 -0.1376 0.0314 -0.0928 -0.1178 0.1556 -0.1286 'X-RAY DIFFRACTION' 4 ? refined 26.7647 41.2781 -3.8945 0.1969 0.1777 0.2375 0.0335 0.0051 0.0018 10.0675 0.2449 1.0066 0.7956 -2.1143 0.0668 0.0031 -0.3123 0.4732 0.0583 0.0369 0.1034 -0.1139 0.0395 -0.0401 'X-RAY DIFFRACTION' 5 ? refined 1.8590 36.0514 0.1379 0.1524 0.0613 0.1652 0.0024 0.0150 0.0063 8.8826 1.7892 1.9361 0.2839 -0.1918 -0.0681 -0.0940 -0.3420 0.0017 0.0444 0.0227 0.0300 0.0870 0.0553 0.0713 'X-RAY DIFFRACTION' 6 ? refined 59.8504 38.6369 -15.3389 0.3078 0.2450 0.4214 -0.0209 0.1255 -0.0495 5.8482 2.3700 2.3575 1.5302 -0.6029 -1.1700 0.0682 0.4492 0.4762 -0.3848 -0.0396 -0.5904 -0.1484 0.5979 -0.0286 'X-RAY DIFFRACTION' 7 ? refined 45.1127 30.3138 -12.9380 0.1509 0.1185 0.1197 0.0032 -0.0041 -0.0234 2.4441 1.3553 1.2516 -0.5246 -0.1163 0.0825 0.0596 0.1558 -0.1653 -0.0891 -0.0129 0.0505 0.1487 0.0466 -0.0466 'X-RAY DIFFRACTION' 8 ? refined 20.1569 42.2475 -11.5684 0.2190 0.1742 0.1857 0.0135 0.0016 0.0027 7.8874 0.8713 0.8513 -2.5071 -2.4269 0.7661 0.1316 0.4329 0.0532 -0.1462 -0.0988 -0.0657 0.0396 -0.0258 -0.0329 'X-RAY DIFFRACTION' 9 ? refined -3.1843 45.7137 0.8487 0.1282 0.0245 0.1261 -0.0101 -0.0266 0.0000 8.5505 3.6963 4.5769 -1.0890 -2.0746 0.6280 -0.0013 -0.2331 0.1390 0.2160 0.0210 0.2695 -0.0067 -0.2062 -0.0197 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 216 ? ? A 229 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 230 ? ? A 242 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 243 ? ? A 259 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 260 ? ? A 271 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 272 ? ? A 295 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 214 ? ? B 225 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 226 ? ? B 259 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 260 ? ? B 276 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 277 ? ? B 295 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.5.0109 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? Auto-Rickshaw phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 4ATH _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'ISOFORM A2 SEQUENCE' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 216 ? CB ? A MSE 3 CB 2 1 Y 1 A MSE 216 ? CG ? A MSE 3 CG 3 1 Y 1 A MSE 216 ? SE ? A MSE 3 SE 4 1 Y 1 A MSE 216 ? CE ? A MSE 3 CE 5 1 Y 1 A ARG 217 ? CG ? A ARG 4 CG 6 1 Y 1 A ARG 217 ? CD ? A ARG 4 CD 7 1 Y 1 A ARG 217 ? NE ? A ARG 4 NE 8 1 Y 1 A ARG 217 ? CZ ? A ARG 4 CZ 9 1 Y 1 A ARG 217 ? NH1 ? A ARG 4 NH1 10 1 Y 1 A ARG 217 ? NH2 ? A ARG 4 NH2 11 1 Y 1 A PHE 218 ? CB ? A PHE 5 CB 12 1 Y 1 A PHE 218 ? CG ? A PHE 5 CG 13 1 Y 1 A PHE 218 ? CD1 ? A PHE 5 CD1 14 1 Y 1 A PHE 218 ? CD2 ? A PHE 5 CD2 15 1 Y 1 A PHE 218 ? CE1 ? A PHE 5 CE1 16 1 Y 1 A PHE 218 ? CE2 ? A PHE 5 CE2 17 1 Y 1 A PHE 218 ? CZ ? A PHE 5 CZ 18 1 Y 1 A ARG 240 ? CD ? A ARG 27 CD 19 1 Y 1 A ARG 240 ? NE ? A ARG 27 NE 20 1 Y 1 A ARG 240 ? CZ ? A ARG 27 CZ 21 1 Y 1 A ARG 240 ? NH1 ? A ARG 27 NH1 22 1 Y 1 A ARG 240 ? NH2 ? A ARG 27 NH2 23 1 Y 1 A HIS 295 ? ND1 ? A HIS 82 ND1 24 1 Y 1 A HIS 295 ? CD2 ? A HIS 82 CD2 25 1 Y 1 A HIS 295 ? CE1 ? A HIS 82 CE1 26 1 Y 1 A HIS 295 ? NE2 ? A HIS 82 NE2 27 1 Y 1 B MSE 216 ? CG ? B MSE 3 CG 28 1 Y 1 B MSE 216 ? SE ? B MSE 3 SE 29 1 Y 1 B MSE 216 ? CE ? B MSE 3 CE 30 1 Y 1 B LYS 272 ? CD ? B LYS 59 CD 31 1 Y 1 B LYS 272 ? CE ? B LYS 59 CE 32 1 Y 1 B LYS 272 ? NZ ? B LYS 59 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 214 ? A GLY 1 2 1 Y 1 A ALA 215 ? A ALA 2 3 1 Y 1 A GLY 296 ? A GLY 83 4 1 Y 1 B GLY 296 ? B GLY 83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #