HEADER OXIDOREDUCTASE 11-MAY-12 4ATY TITLE CRYSTAL STRUCTURE OF A TEREPHTHALATE 1,2-CIS-DIHYDRODIOLDEHYDROGENASE TITLE 2 FROM BURKHOLDERIA XENOVORANS LB400 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEREPHTHALATE 1,2-CIS-DIHYDRODIOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 4-HYDROXYTHREONINE-4-PHOSPHATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.262; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS LB400; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BAINS,M.J.BOULANGER REVDAT 4 08-MAY-24 4ATY 1 REMARK LINK REVDAT 3 29-APR-15 4ATY 1 REMARK REVDAT 2 10-OCT-12 4ATY 1 JRNL REVDAT 1 22-AUG-12 4ATY 0 JRNL AUTH J.BAINS,J.E.WULFF,M.J.BOULANGER JRNL TITL INVESTIGATING TEREPHTHALATE BIODEGRADATION: STRUCTURAL JRNL TITL 2 CHARACTERIZATION OF A PUTATIVE DECARBOXYLATING JRNL TITL 3 CIS-DIHYDRODIOL DEHYDROGENASE. JRNL REF J.MOL.BIOL. V. 423 284 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22889862 JRNL DOI 10.1016/J.JMB.2012.07.022 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.192 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2294 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3114 ; 2.235 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 8.545 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;39.197 ;22.771 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;19.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.287 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1710 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1545 ; 1.306 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2441 ; 2.084 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 749 ; 3.281 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 673 ; 4.786 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ATY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29242 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.74000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.74000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.09500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.09500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.74000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.31000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.09500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.74000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.31000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.09500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 465 THR A 8 REMARK 465 ARG A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 38 REMARK 465 ARG A 39 REMARK 465 ASP A 40 REMARK 465 GLU A 41 REMARK 465 ARG A 42 REMARK 465 SER A 43 REMARK 465 GLU A 44 REMARK 465 HIS A 45 REMARK 465 GLY A 46 REMARK 465 GLY A 47 REMARK 465 HIS A 48 REMARK 465 ALA A 49 REMARK 465 VAL A 50 REMARK 465 HIS A 51 REMARK 465 SER A 52 REMARK 465 ARG A 55 REMARK 465 PRO A 74 REMARK 465 GLU A 75 REMARK 465 GLN A 82 REMARK 465 LEU A 83 REMARK 465 ASP A 84 REMARK 465 ASP A 85 REMARK 465 LEU A 86 REMARK 465 GLU A 90 REMARK 465 PRO A 91 REMARK 465 ASN A 92 REMARK 465 ALA A 93 REMARK 465 VAL A 154 REMARK 465 ARG A 155 REMARK 465 PHE A 156 REMARK 465 PRO A 350 REMARK 465 LEU A 351 REMARK 465 ALA A 352 REMARK 465 GLU A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 ASN A 150 CG OD1 ND2 REMARK 470 ILE A 222 O REMARK 470 GLY A 261 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ PHE A 63 CE2 PHE A 107 1.35 REMARK 500 C GLY A 261 O HOH A 2172 1.47 REMARK 500 CE1 PHE A 63 CE2 PHE A 107 1.85 REMARK 500 CZ PHE A 63 CZ PHE A 107 1.89 REMARK 500 CE1 PHE A 63 CD2 PHE A 107 2.06 REMARK 500 CG2 VAL A 64 CE1 PHE A 107 2.10 REMARK 500 OE2 GLU A 172 O HOH A 2092 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 194 CA - C - N ANGL. DEV. = 20.3 DEGREES REMARK 500 ILE A 194 O - C - N ANGL. DEV. = -19.5 DEGREES REMARK 500 ALA A 195 C - N - CA ANGL. DEV. = 23.8 DEGREES REMARK 500 ALA A 195 O - C - N ANGL. DEV. = -22.4 DEGREES REMARK 500 LEU A 201 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 THR A 275 CA - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 340 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 96.18 -68.01 REMARK 500 SER A 101 -61.39 -137.86 REMARK 500 LEU A 190 -109.98 -141.40 REMARK 500 ILE A 249 -63.47 -130.13 REMARK 500 HIS A 318 50.47 -114.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 195 -30.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2031 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A2223 DISTANCE = 9.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1350 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 NE2 REMARK 620 2 HIS A 235 NE2 95.7 REMARK 620 3 HIS A 287 NE2 99.3 102.2 REMARK 620 4 BME A1351 S2 92.4 94.3 158.6 REMARK 620 5 HOH A2146 O 159.9 93.5 96.2 69.0 REMARK 620 6 HOH A2221 O 80.8 160.6 97.2 67.0 84.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1351 DBREF 4ATY A 5 353 UNP Q13RP4 Q13RP4_BURXL 1 349 SEQRES 1 A 349 MET SER ARG THR ARG ASP ARG ALA MET THR VAL ALA LEU SEQRES 2 A 349 ALA ILE GLY ASP PRO ASN GLY ILE GLY PRO GLU ILE ALA SEQRES 3 A 349 VAL LYS ALA ALA ALA GLN MET ALA ARG ASP GLU ARG SER SEQRES 4 A 349 GLU HIS GLY GLY HIS ALA VAL HIS SER GLN PRO ARG ILE SEQRES 5 A 349 VAL LEU PHE GLY ASP ALA PHE VAL ILE ARG ARG TYR ALA SEQRES 6 A 349 ARG GLN CYS CYS PRO GLU LEU MET LEU ARG LEU VAL GLN SEQRES 7 A 349 LEU ASP ASP LEU PRO SER ALA GLU PRO ASN ALA ILE ASP SEQRES 8 A 349 MET VAL ASP VAL ALA SER LEU PRO ALA GLU ALA PHE VAL SEQRES 9 A 349 PRO GLY GLU VAL ALA ALA ALA ALA GLY THR ALA THR LEU SEQRES 10 A 349 ALA TYR VAL SER ALA ALA LEU ARG ALA ALA ARG ALA GLY SEQRES 11 A 349 GLN VAL ASP ALA VAL ILE ALA CYS PRO HIS SER GLU THR SEQRES 12 A 349 ALA ILE ASN ALA SER GLY VAL ARG PHE ALA GLY TYR PRO SEQRES 13 A 349 GLY PHE VAL ALA HIS GLU MET GLY MET PRO ALA GLU ASP SEQRES 14 A 349 VAL TYR LEU LEU LEU ILE GLY GLY GLY LEU ARG ILE VAL SEQRES 15 A 349 HIS ALA THR LEU HIS GLU GLY ILE ALA SER ALA LEU ALA SEQRES 16 A 349 ARG LEU ASP GLN ARG HIS VAL GLU ARG ALA ALA ARG ALA SEQRES 17 A 349 ALA VAL GLN ALA LEU GLN LEU MET GLY ILE ALA HIS PRO SEQRES 18 A 349 VAL VAL GLY LEU MET GLY ILE ASN PRO HIS ALA GLY GLU SEQRES 19 A 349 GLY GLY LEU PHE GLY ARG ASP ASP ILE ASP ILE THR GLU SEQRES 20 A 349 PRO VAL ALA ARG LYS LEU ARG ASP ASP GLY MET THR VAL SEQRES 21 A 349 ILE GLY PRO GLN GLY ALA ASP LEU LEU LEU THR ASN PRO SEQRES 22 A 349 ASP ILE ASP VAL PHE VAL ALA MET TYR HIS ASP GLN GLY SEQRES 23 A 349 HIS ILE PRO VAL LYS LEU ARG ALA GLY ARG HIS SER ALA SEQRES 24 A 349 ALA LEU SER ILE GLY ALA GLY VAL LEU PHE SER SER VAL SEQRES 25 A 349 GLY HIS GLY SER GLY PHE ASP ILE ALA GLY THR LEU LEU SEQRES 26 A 349 ALA ASP PRO ALA PRO LEU LEU GLY ALA ILE ARG LEU VAL SEQRES 27 A 349 THR THR GLY THR VAL LEU ALA PRO LEU ALA GLU HET ZN A1350 1 HET BME A1351 4 HETNAM ZN ZINC ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 ZN ZN 2+ FORMUL 3 BME C2 H6 O S FORMUL 4 HOH *224(H2 O) HELIX 1 1 ILE A 25 GLN A 36 1 12 HELIX 2 2 ASP A 61 CYS A 73 1 13 HELIX 3 3 PRO A 103 PHE A 107 5 5 HELIX 4 4 ALA A 113 ALA A 133 1 21 HELIX 5 5 SER A 145 GLY A 153 1 9 HELIX 6 6 GLY A 158 MET A 167 1 10 HELIX 7 7 PRO A 170 VAL A 174 5 5 HELIX 8 8 GLY A 193 LEU A 201 1 9 HELIX 9 9 ASP A 202 MET A 220 1 19 HELIX 10 10 ASN A 233 GLU A 238 5 6 HELIX 11 11 ARG A 244 ILE A 249 1 6 HELIX 12 12 ILE A 249 ASP A 260 1 12 HELIX 13 13 GLY A 269 LEU A 274 1 6 HELIX 14 14 TYR A 286 GLY A 299 1 14 HELIX 15 15 PRO A 332 GLY A 345 1 14 SHEET 1 AA 6 ARG A 79 LEU A 80 0 SHEET 2 AA 6 ASP A 95 ASP A 98 1 N MET A 96 O ARG A 79 SHEET 3 AA 6 VAL A 57 GLY A 60 1 O LEU A 58 N VAL A 97 SHEET 4 AA 6 VAL A 15 ALA A 18 1 O VAL A 15 N VAL A 57 SHEET 5 AA 6 ALA A 138 ALA A 141 1 O ALA A 138 N ALA A 16 SHEET 6 AA 6 LEU A 312 SER A 315 1 O LEU A 312 N VAL A 139 SHEET 1 AB 6 VAL A 264 GLN A 268 0 SHEET 2 AB 6 VAL A 227 MET A 230 1 O VAL A 227 N ILE A 265 SHEET 3 AB 6 VAL A 281 ALA A 284 1 O VAL A 281 N GLY A 228 SHEET 4 AB 6 LEU A 183 HIS A 187 1 O ARG A 184 N PHE A 282 SHEET 5 AB 6 TYR A 175 GLY A 180 -1 O LEU A 176 N HIS A 187 SHEET 6 AB 6 SER A 302 ILE A 307 -1 O ALA A 303 N ILE A 179 LINK NE2 HIS A 191 ZN ZN A1350 4555 1555 2.32 LINK NE2 HIS A 235 ZN ZN A1350 1555 1555 2.18 LINK NE2 HIS A 287 ZN ZN A1350 4555 1555 2.12 LINK ZN ZN A1350 S2 BME A1351 1555 1555 2.49 LINK ZN ZN A1350 O HOH A2146 1555 1555 2.29 LINK ZN ZN A1350 O HOH A2221 1555 1555 2.34 CISPEP 1 PRO A 109 GLY A 110 0 -7.66 CISPEP 2 GLY A 266 PRO A 267 0 3.77 SITE 1 AC1 6 HIS A 191 HIS A 235 HIS A 287 BME A1351 SITE 2 AC1 6 HOH A2146 HOH A2221 SITE 1 AC2 5 HIS A 191 HIS A 235 ZN A1350 HOH A2146 SITE 2 AC2 5 HOH A2221 CRYST1 44.620 76.190 197.480 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022411 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005064 0.00000