HEADER OXIDOREDUCTASE 14-MAY-12 4AU9 TITLE CRYSTAL STRUCTURE OF A FUNGAL DYP-TYPE PEROXIDASE FROM AURICULARIA TITLE 2 AURICULA-JUDAE CAVEAT 4AU9 NAG B 711 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYP-TYPE PEROXIDASE I; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DYP-TYPE PEROXIDASE DOMAIN, RESIDUES 1-448; COMPND 5 EC: 1.11.1.19 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AURICULARIA AURICULA-JUDAE; SOURCE 3 ORGANISM_COMMON: EAR FUNGUS; SOURCE 4 ORGANISM_TAXID: 29892; SOURCE 5 STRAIN: SXM9-C021; SOURCE 6 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM), ACCESS SOURCE 7 NUMBER DSMZ 11326 KEYWDS OXIDOREDUCTASE, HEME, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.STRITTMATTER,M.PECYNA,R.ULLRICH,M.HOFRICHTER,D.A.PLATTNER,C.LIERS, AUTHOR 2 K.PIONTEK REVDAT 5 20-DEC-23 4AU9 1 HETSYN REVDAT 4 29-JUL-20 4AU9 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 14-JAN-15 4AU9 1 LINK HETATM CONECT REVDAT 2 20-FEB-13 4AU9 1 JRNL REVDAT 1 26-DEC-12 4AU9 0 JRNL AUTH E.STRITTMATTER,C.LIERS,R.ULLRICH,S.WACHTER,M.HOFRICHTER, JRNL AUTH 2 D.A.PLATTNER,K.PIONTEK JRNL TITL FIRST CRYSTAL STRUCTURE OF A FUNGAL HIGH-REDOX POTENTIAL JRNL TITL 2 DYE-DECOLORIZING PEROXIDASE: SUBSTRATE INTERACTION SITES AND JRNL TITL 3 LONG-RANGE ELECTRON TRANSFER. JRNL REF J.BIOL.CHEM. V. 288 4095 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23235158 JRNL DOI 10.1074/JBC.M112.400176 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2483 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 246 REMARK 3 SOLVENT ATOMS : 679 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7066 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9666 ; 1.247 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 898 ; 8.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 292 ;39.728 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 986 ;16.355 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;22.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1084 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5472 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4465 ; 2.242 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7160 ; 3.197 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2601 ; 2.588 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2504 ; 3.390 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2D3Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M SODIUM ACETATE TRIHYDRATE 0.085 REMARK 280 M TRIS HYDROCHLORIDE PH 8.5 25.5% POLYETHYLENE GLYCOL 4000 15% REMARK 280 GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.34450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 168 N GLY A 169 1.72 REMARK 500 OD2 ASP B 291 O HOH B 2224 1.95 REMARK 500 OD1 ASN B 409 OG SER B 419 2.00 REMARK 500 O HOH A 2232 O HOH A 2233 2.07 REMARK 500 O HOH B 2042 O HOH B 2114 2.08 REMARK 500 O HOH A 2214 O HOH A 2215 2.10 REMARK 500 O HOH A 2093 O HOH A 2265 2.11 REMARK 500 O HOH A 2354 O HOH A 2355 2.11 REMARK 500 O HOH B 2050 O HOH B 2150 2.14 REMARK 500 O HOH A 2387 O HOH A 2388 2.15 REMARK 500 O HOH B 2058 O HOH B 2068 2.16 REMARK 500 O HOH B 2167 O HOH B 2168 2.16 REMARK 500 OG SER B 101 O HOH B 2088 2.18 REMARK 500 O HOH B 2116 O HOH B 2123 2.18 REMARK 500 O HOH B 2269 O HOH B 2270 2.19 REMARK 500 O HOH A 2094 O HOH A 2241 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 18 33.08 70.01 REMARK 500 ASP A 80 151.45 -49.61 REMARK 500 ALA A 110 47.13 -85.28 REMARK 500 TYR A 285 -21.19 83.19 REMARK 500 ARG A 311 -129.91 47.23 REMARK 500 TRP A 377 -61.66 -104.64 REMARK 500 ASN A 401 43.87 -145.74 REMARK 500 THR B 2 -161.62 98.70 REMARK 500 LEU B 61 -79.30 -13.39 REMARK 500 THR B 102 -1.98 -59.89 REMARK 500 VAL B 106 113.08 -34.75 REMARK 500 ALA B 110 35.62 -97.39 REMARK 500 PHE B 178 -41.00 -135.75 REMARK 500 THR B 265 76.19 -166.05 REMARK 500 THR B 267 -32.69 -130.61 REMARK 500 THR B 284 -1.93 -142.35 REMARK 500 ALA B 288 99.17 -47.60 REMARK 500 PRO B 300 158.40 -43.98 REMARK 500 ARG B 311 -129.30 55.70 REMARK 500 ASP B 313 -8.48 -57.41 REMARK 500 SER B 346 -78.59 -53.02 REMARK 500 ALA B 347 -34.42 -34.69 REMARK 500 ASN B 349 27.68 45.29 REMARK 500 TRP B 377 -68.52 -98.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 176 GLY A 177 -42.01 REMARK 500 ALA A 288 GLY A 289 -52.43 REMARK 500 ALA B 1 THR B 2 147.43 REMARK 500 TRP B 105 VAL B 106 147.65 REMARK 500 ASN B 176 GLY B 177 -41.26 REMARK 500 SER B 238 GLY B 239 146.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2026 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH B2052 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B2141 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2286 DISTANCE = 7.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 550 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 304 NE2 REMARK 620 2 HEM A 550 NA 85.1 REMARK 620 3 HEM A 550 NB 95.2 89.0 REMARK 620 4 HEM A 550 NC 98.0 176.8 90.3 REMARK 620 5 HEM A 550 ND 88.4 90.9 176.4 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 550 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 304 NE2 REMARK 620 2 HEM B 550 NA 89.8 REMARK 620 3 HEM B 550 NB 92.0 93.3 REMARK 620 4 HEM B 550 NC 91.6 178.5 86.5 REMARK 620 5 HEM B 550 ND 89.4 86.6 178.6 93.6 REMARK 620 N 1 2 3 4 DBREF 4AU9 A 1 448 PDB 4AU9 4AU9 1 448 DBREF 4AU9 B 1 448 PDB 4AU9 4AU9 1 448 SEQRES 1 A 448 ALA THR SER LEU ASN THR ASP ASP ILE GLN GLY ASP ILE SEQRES 2 A 448 LEU VAL GLY MET HIS LYS GLN LYS GLN LEU PHE TYR PHE SEQRES 3 A 448 PHE ALA ILE ASN ASP PRO ALA THR PHE LYS THR PHE LEU SEQRES 4 A 448 ALA SER ASP ILE ALA PRO VAL VAL ALA SER VAL THR GLN SEQRES 5 A 448 LEU SER ASN VAL ALA THR GLN PRO LEU VAL ALA LEU ASN SEQRES 6 A 448 ILE ALA PHE SER ASN THR GLY LEU LEU ALA LEU GLY VAL SEQRES 7 A 448 THR ASP ASN LEU GLY ASP SER LEU PHE ALA ASN GLY GLN SEQRES 8 A 448 ALA LYS ASP ALA THR SER PHE LYS GLU SER THR SER SER SEQRES 9 A 448 TRP VAL PRO GLN PHE ALA GLY THR GLY ILE HIS GLY VAL SEQRES 10 A 448 ILE ILE LEU ALA SER ASP THR THR ASP LEU ILE ASP GLN SEQRES 11 A 448 GLN VAL ALA SER ILE GLU SER THR PHE GLY SER SER ILE SEQRES 12 A 448 SER LYS LEU TYR SER LEU SER ALA SER ILE ARG PRO GLY SEQRES 13 A 448 ASN GLU ALA GLY HIS GLU MET PHE GLY PHE LEU ASP GLY SEQRES 14 A 448 ILE ALA GLN PRO ALA ILE ASN GLY PHE ASN THR PRO LEU SEQRES 15 A 448 PRO GLY GLN ASN ILE VAL ASP ALA GLY VAL ILE ILE THR SEQRES 16 A 448 GLY ALA THR ASN ASP PRO ILE THR ARG PRO SER TRP ALA SEQRES 17 A 448 VAL GLY GLY SER PHE LEU ALA PHE ARG GLN LEU GLU GLN SEQRES 18 A 448 LEU VAL PRO GLU PHE ASN LYS TYR LEU LEU ASP ASN ALA SEQRES 19 A 448 PRO ALA GLY SER GLY SER LEU GLN ALA ARG ALA ASP LEU SEQRES 20 A 448 LEU GLY ALA ARG MET VAL GLY ARG TRP LYS SER GLY ALA SEQRES 21 A 448 PRO ILE ASP LEU THR PRO THR ALA ASP ASP PRO ALA LEU SEQRES 22 A 448 GLY ALA ASP ALA GLN ARG ASN ASN ASN PHE THR TYR SER SEQRES 23 A 448 HIS ALA GLY PHE ASP LEU GLY SER ASP GLN SER HIS CYS SEQRES 24 A 448 PRO PHE SER ALA HIS ILE ARG LYS THR ARG PRO ARG ALA SEQRES 25 A 448 ASP LEU GLY GLY SER LEU THR PRO PRO ASN LEU SER ALA SEQRES 26 A 448 GLY ALA ASN SER ILE MET ARG SER GLY ILE PRO TYR GLY SEQRES 27 A 448 PRO GLU VAL THR SER ALA GLU SER ALA SER ASN THR THR SEQRES 28 A 448 THR GLN GLU ARG GLY LEU ALA PHE VAL ALA TYR GLN ALA SEQRES 29 A 448 GLN LEU SER GLN GLY PHE HIS PHE LEU GLN GLN THR TRP SEQRES 30 A 448 ALA ASP ASN ALA ASN PHE PRO PRO GLY LYS THR PRO ALA SEQRES 31 A 448 THR VAL GLY LEU ASP PRO ILE ILE GLY GLN ASN ASN GLY SEQRES 32 A 448 GLN PRO ARG VAL VAL ASN GLY LEU LEU PRO SER ASN SER SEQRES 33 A 448 SER ALA SER LEU SER ILE PRO GLN PHE VAL VAL SER HIS SEQRES 34 A 448 GLY GLY GLU TYR PHE PHE SER PRO PRO ILE SER ALA ILE SEQRES 35 A 448 GLY GLY ARG LEU SER ALA SEQRES 1 B 448 ALA THR SER LEU ASN THR ASP ASP ILE GLN GLY ASP ILE SEQRES 2 B 448 LEU VAL GLY MET HIS LYS GLN LYS GLN LEU PHE TYR PHE SEQRES 3 B 448 PHE ALA ILE ASN ASP PRO ALA THR PHE LYS THR PHE LEU SEQRES 4 B 448 ALA SER ASP ILE ALA PRO VAL VAL ALA SER VAL THR GLN SEQRES 5 B 448 LEU SER ASN VAL ALA THR GLN PRO LEU VAL ALA LEU ASN SEQRES 6 B 448 ILE ALA PHE SER ASN THR GLY LEU LEU ALA LEU GLY VAL SEQRES 7 B 448 THR ASP ASN LEU GLY ASP SER LEU PHE ALA ASN GLY GLN SEQRES 8 B 448 ALA LYS ASP ALA THR SER PHE LYS GLU SER THR SER SER SEQRES 9 B 448 TRP VAL PRO GLN PHE ALA GLY THR GLY ILE HIS GLY VAL SEQRES 10 B 448 ILE ILE LEU ALA SER ASP THR THR ASP LEU ILE ASP GLN SEQRES 11 B 448 GLN VAL ALA SER ILE GLU SER THR PHE GLY SER SER ILE SEQRES 12 B 448 SER LYS LEU TYR SER LEU SER ALA SER ILE ARG PRO GLY SEQRES 13 B 448 ASN GLU ALA GLY HIS GLU MET PHE GLY PHE LEU ASP GLY SEQRES 14 B 448 ILE ALA GLN PRO ALA ILE ASN GLY PHE ASN THR PRO LEU SEQRES 15 B 448 PRO GLY GLN ASN ILE VAL ASP ALA GLY VAL ILE ILE THR SEQRES 16 B 448 GLY ALA THR ASN ASP PRO ILE THR ARG PRO SER TRP ALA SEQRES 17 B 448 VAL GLY GLY SER PHE LEU ALA PHE ARG GLN LEU GLU GLN SEQRES 18 B 448 LEU VAL PRO GLU PHE ASN LYS TYR LEU LEU ASP ASN ALA SEQRES 19 B 448 PRO ALA GLY SER GLY SER LEU GLN ALA ARG ALA ASP LEU SEQRES 20 B 448 LEU GLY ALA ARG MET VAL GLY ARG TRP LYS SER GLY ALA SEQRES 21 B 448 PRO ILE ASP LEU THR PRO THR ALA ASP ASP PRO ALA LEU SEQRES 22 B 448 GLY ALA ASP ALA GLN ARG ASN ASN ASN PHE THR TYR SER SEQRES 23 B 448 HIS ALA GLY PHE ASP LEU GLY SER ASP GLN SER HIS CYS SEQRES 24 B 448 PRO PHE SER ALA HIS ILE ARG LYS THR ARG PRO ARG ALA SEQRES 25 B 448 ASP LEU GLY GLY SER LEU THR PRO PRO ASN LEU SER ALA SEQRES 26 B 448 GLY ALA ASN SER ILE MET ARG SER GLY ILE PRO TYR GLY SEQRES 27 B 448 PRO GLU VAL THR SER ALA GLU SER ALA SER ASN THR THR SEQRES 28 B 448 THR GLN GLU ARG GLY LEU ALA PHE VAL ALA TYR GLN ALA SEQRES 29 B 448 GLN LEU SER GLN GLY PHE HIS PHE LEU GLN GLN THR TRP SEQRES 30 B 448 ALA ASP ASN ALA ASN PHE PRO PRO GLY LYS THR PRO ALA SEQRES 31 B 448 THR VAL GLY LEU ASP PRO ILE ILE GLY GLN ASN ASN GLY SEQRES 32 B 448 GLN PRO ARG VAL VAL ASN GLY LEU LEU PRO SER ASN SER SEQRES 33 B 448 SER ALA SER LEU SER ILE PRO GLN PHE VAL VAL SER HIS SEQRES 34 B 448 GLY GLY GLU TYR PHE PHE SER PRO PRO ILE SER ALA ILE SEQRES 35 B 448 GLY GLY ARG LEU SER ALA MODRES 4AU9 ASN A 282 ASN GLYCOSYLATION SITE MODRES 4AU9 ASN A 349 ASN GLYCOSYLATION SITE MODRES 4AU9 ASN A 415 ASN GLYCOSYLATION SITE MODRES 4AU9 ASN B 282 ASN GLYCOSYLATION SITE MODRES 4AU9 ASN B 349 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET HEM A 550 43 HET NAG A 711 14 HET NAG A 721 14 HET GOL A 800 6 HET GOL A 801 6 HET GOL A 802 6 HET ACT A 803 4 HET HEM B 550 43 HET NAG B 711 14 HET GOL B 800 6 HET TAM B 801 11 HET GOL B 802 6 HET GOL B 803 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 5 HEM 2(C34 H32 FE N4 O4) FORMUL 8 GOL 6(C3 H8 O3) FORMUL 11 ACT C2 H3 O2 1- FORMUL 15 TAM C7 H17 N O3 FORMUL 18 HOH *679(H2 O) HELIX 1 1 GLN A 10 VAL A 15 1 6 HELIX 2 2 ASP A 31 ASP A 42 1 12 HELIX 3 3 ILE A 43 VAL A 46 5 4 HELIX 4 4 SER A 49 SER A 54 1 6 HELIX 5 5 ASN A 55 GLN A 59 5 5 HELIX 6 6 SER A 69 LEU A 76 1 8 HELIX 7 7 ASP A 84 GLY A 90 1 7 HELIX 8 8 ALA A 92 THR A 96 5 5 HELIX 9 9 SER A 101 TRP A 105 5 5 HELIX 10 10 VAL A 106 ALA A 110 5 5 HELIX 11 11 THR A 124 GLY A 140 1 17 HELIX 12 12 PRO A 155 ALA A 159 5 5 HELIX 13 13 GLY A 191 ILE A 193 5 3 HELIX 14 14 PRO A 205 VAL A 209 5 5 HELIX 15 15 LEU A 222 ASN A 233 1 12 HELIX 16 16 SER A 240 GLY A 254 1 15 HELIX 17 17 ASP A 270 ALA A 275 1 6 HELIX 18 18 ALA A 303 ARG A 309 1 7 HELIX 19 19 PRO A 310 GLY A 315 5 6 HELIX 20 20 ALA A 325 SER A 329 5 5 HELIX 21 21 THR A 342 ASN A 349 1 8 HELIX 22 22 GLY A 369 THR A 376 1 8 HELIX 23 23 PRO A 438 GLY A 444 1 7 HELIX 24 24 GLN B 10 VAL B 15 1 6 HELIX 25 25 ASP B 31 ILE B 43 1 13 HELIX 26 26 ALA B 44 VAL B 46 5 3 HELIX 27 27 SER B 49 ASN B 55 1 7 HELIX 28 28 SER B 69 LEU B 76 1 8 HELIX 29 29 ASP B 84 GLY B 90 1 7 HELIX 30 30 GLY B 90 ALA B 95 1 6 HELIX 31 31 SER B 101 TRP B 105 5 5 HELIX 32 32 THR B 124 GLY B 140 1 17 HELIX 33 33 PRO B 155 ALA B 159 5 5 HELIX 34 34 GLY B 191 ILE B 193 5 3 HELIX 35 35 PRO B 205 VAL B 209 5 5 HELIX 36 36 LEU B 222 ASN B 233 1 12 HELIX 37 37 SER B 240 GLY B 254 1 15 HELIX 38 38 ASP B 270 ALA B 275 1 6 HELIX 39 39 ASP B 276 ASN B 281 1 6 HELIX 40 40 ALA B 303 ARG B 309 1 7 HELIX 41 41 PRO B 310 GLY B 315 5 6 HELIX 42 42 ALA B 325 SER B 329 5 5 HELIX 43 43 THR B 342 SER B 348 1 7 HELIX 44 44 GLY B 369 THR B 376 1 8 HELIX 45 45 PRO B 438 GLY B 443 1 6 HELIX 46 46 GLY B 444 ALA B 448 5 5 SHEET 1 AA 4 ALA A 63 PHE A 68 0 SHEET 2 AA 4 GLY A 116 SER A 122 -1 O VAL A 117 N ALA A 67 SHEET 3 AA 4 LYS A 21 ILE A 29 -1 O LYS A 21 N SER A 122 SHEET 4 AA 4 ILE A 143 SER A 152 -1 O SER A 144 N ALA A 28 SHEET 1 AB 2 ALA A 174 ASN A 176 0 SHEET 2 AB 2 ILE A 187 ASP A 189 1 O VAL A 188 N ASN A 176 SHEET 1 AC 2 MET A 331 ARG A 332 0 SHEET 2 AC 2 GLY A 356 GLN A 363 -1 O TYR A 362 N MET A 331 SHEET 1 AD 2 ILE A 335 TYR A 337 0 SHEET 2 AD 2 GLY A 356 GLN A 363 1 O GLY A 356 N TYR A 337 SHEET 1 AE 4 VAL A 426 SER A 436 0 SHEET 2 AE 4 SER A 212 GLN A 221 -1 O SER A 212 N SER A 436 SHEET 3 AE 4 GLY A 356 GLN A 363 -1 O LEU A 357 N LEU A 219 SHEET 4 AE 4 ILE A 335 TYR A 337 1 O ILE A 335 N ALA A 358 SHEET 1 AF 4 VAL A 426 SER A 436 0 SHEET 2 AF 4 SER A 212 GLN A 221 -1 O SER A 212 N SER A 436 SHEET 3 AF 4 GLY A 356 GLN A 363 -1 O LEU A 357 N LEU A 219 SHEET 4 AF 4 MET A 331 ARG A 332 -1 O MET A 331 N TYR A 362 SHEET 1 AG 2 ARG A 406 ASN A 409 0 SHEET 2 AG 2 SER A 419 ILE A 422 -1 O LEU A 420 N VAL A 408 SHEET 1 BA 4 ALA B 63 PHE B 68 0 SHEET 2 BA 4 GLY B 116 SER B 122 -1 O VAL B 117 N ALA B 67 SHEET 3 BA 4 LYS B 21 ILE B 29 -1 O LYS B 21 N SER B 122 SHEET 4 BA 4 ILE B 143 SER B 152 -1 O SER B 144 N ALA B 28 SHEET 1 BB 2 ALA B 174 ASN B 176 0 SHEET 2 BB 2 ILE B 187 ASP B 189 1 O VAL B 188 N ASN B 176 SHEET 1 BC 2 MET B 331 ARG B 332 0 SHEET 2 BC 2 GLY B 356 GLN B 363 -1 O TYR B 362 N MET B 331 SHEET 1 BD 2 ILE B 335 TYR B 337 0 SHEET 2 BD 2 GLY B 356 GLN B 363 1 O GLY B 356 N TYR B 337 SHEET 1 BE 4 VAL B 426 SER B 436 0 SHEET 2 BE 4 SER B 212 GLN B 221 -1 O SER B 212 N SER B 436 SHEET 3 BE 4 GLY B 356 GLN B 363 -1 O LEU B 357 N LEU B 219 SHEET 4 BE 4 ILE B 335 TYR B 337 1 O ILE B 335 N ALA B 358 SHEET 1 BF 4 VAL B 426 SER B 436 0 SHEET 2 BF 4 SER B 212 GLN B 221 -1 O SER B 212 N SER B 436 SHEET 3 BF 4 GLY B 356 GLN B 363 -1 O LEU B 357 N LEU B 219 SHEET 4 BF 4 MET B 331 ARG B 332 -1 O MET B 331 N TYR B 362 SHEET 1 BG 2 ARG B 406 ASN B 409 0 SHEET 2 BG 2 SER B 419 ILE B 422 -1 O LEU B 420 N VAL B 408 LINK ND2 ASN A 282 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 349 C1 NAG A 711 1555 1555 1.43 LINK ND2 ASN A 415 C1 NAG A 721 1555 1555 1.45 LINK ND2 ASN B 282 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 349 C1 NAG B 711 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK NE2 HIS A 304 FE HEM A 550 1555 1555 2.09 LINK NE2 HIS B 304 FE HEM B 550 1555 1555 2.10 CISPEP 1 PRO A 320 PRO A 321 0 13.31 CISPEP 2 PHE A 383 PRO A 384 0 3.81 CISPEP 3 THR A 388 PRO A 389 0 -3.72 CISPEP 4 PRO B 320 PRO B 321 0 11.62 CISPEP 5 PHE B 383 PRO B 384 0 1.36 CISPEP 6 THR B 388 PRO B 389 0 0.75 CRYST1 66.599 46.689 141.198 90.00 91.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015015 0.000000 0.000354 0.00000 SCALE2 0.000000 0.021418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007084 0.00000 MTRIX1 1 -0.340810 0.928710 -0.146070 4.50888 1 MTRIX2 1 0.925890 0.304640 -0.223410 -16.24434 1 MTRIX3 1 -0.162990 -0.211380 -0.963720 -78.71808 1