HEADER CELL ADHESION 23-MAY-12 4AV5 TITLE STRUCTURE OF A TRICLINIC CRYSTAL OF THE FIMH LECTIN DOMAIN IN COMPLEX TITLE 2 WITH A PROPYNYL BIPHENYL ALPHA-D-MANNOSIDE, AT 1.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMH; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LECTIN DOMAIN, RESIDUES 10-167; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS CELL ADHESION, BACTERIAL ADHESIN TYPE 1 FIMBRIAE, URINARY TRACT KEYWDS 2 INFECTION, VARIABLE IMMUNOGLOBULIN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.WELLENS,M.LAHMANN,M.TOUAIBIA,J.VAUCHER,S.OSCARSON,R.ROY,H.REMAUT, AUTHOR 2 J.BOUCKAERT REVDAT 5 06-NOV-24 4AV5 1 REMARK REVDAT 4 20-DEC-23 4AV5 1 REMARK REVDAT 3 05-SEP-12 4AV5 1 JRNL REVDAT 2 18-JUL-12 4AV5 1 ATOM CONECT MASTER END REVDAT 1 27-JUN-12 4AV5 0 JRNL AUTH A.WELLENS,M.LAHMANN,M.TOUAIBIA,J.VAUCHER,S.OSCARSON,R.ROY, JRNL AUTH 2 H.REMAUT,J.BOUCKAERT JRNL TITL THE TYROSINE GATE AS A POTENTIAL ENTROPIC LEVER IN THE JRNL TITL 2 RECEPTOR-BINDING SITE OF THE BACTERIAL ADHESIN FIMH. JRNL REF BIOCHEMISTRY V. 51 4790 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22657089 JRNL DOI 10.1021/BI300251R REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 109799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.5937 - 4.3323 0.90 3368 177 0.1686 0.1880 REMARK 3 2 4.3323 - 3.4459 0.94 3528 186 0.1297 0.1359 REMARK 3 3 3.4459 - 3.0124 0.93 3465 182 0.1204 0.1330 REMARK 3 4 3.0124 - 2.7379 0.94 3475 183 0.1255 0.1616 REMARK 3 5 2.7379 - 2.5422 0.94 3519 186 0.1353 0.1634 REMARK 3 6 2.5422 - 2.3926 0.94 3529 185 0.1314 0.1438 REMARK 3 7 2.3926 - 2.2730 0.95 3525 186 0.1270 0.1438 REMARK 3 8 2.2730 - 2.1742 0.94 3488 183 0.1252 0.1595 REMARK 3 9 2.1742 - 2.0906 0.94 3527 186 0.1250 0.1458 REMARK 3 10 2.0906 - 2.0186 0.93 3457 182 0.1282 0.1546 REMARK 3 11 2.0186 - 1.9555 0.95 3557 187 0.1258 0.1440 REMARK 3 12 1.9555 - 1.8997 0.93 3438 181 0.1346 0.1469 REMARK 3 13 1.8997 - 1.8497 0.94 3465 182 0.1335 0.1607 REMARK 3 14 1.8497 - 1.8046 0.95 3535 187 0.1386 0.1880 REMARK 3 15 1.8046 - 1.7636 0.94 3525 185 0.1408 0.1623 REMARK 3 16 1.7636 - 1.7261 0.94 3507 185 0.1462 0.1888 REMARK 3 17 1.7261 - 1.6916 0.93 3447 181 0.1470 0.1741 REMARK 3 18 1.6916 - 1.6597 0.94 3504 185 0.1478 0.1833 REMARK 3 19 1.6597 - 1.6301 0.94 3475 182 0.1465 0.1642 REMARK 3 20 1.6301 - 1.6025 0.94 3494 184 0.1447 0.1811 REMARK 3 21 1.6025 - 1.5767 0.93 3470 183 0.1458 0.1793 REMARK 3 22 1.5767 - 1.5524 0.94 3523 185 0.1510 0.1732 REMARK 3 23 1.5524 - 1.5296 0.92 3422 180 0.1560 0.2064 REMARK 3 24 1.5296 - 1.5081 0.92 3406 180 0.1616 0.1872 REMARK 3 25 1.5081 - 1.4877 0.93 3447 181 0.1581 0.1889 REMARK 3 26 1.4877 - 1.4684 0.93 3427 181 0.1643 0.2053 REMARK 3 27 1.4684 - 1.4500 0.92 3434 180 0.1671 0.2073 REMARK 3 28 1.4500 - 1.4326 0.92 3475 183 0.1687 0.1700 REMARK 3 29 1.4326 - 1.4159 0.92 3405 179 0.1708 0.1867 REMARK 3 30 1.4159 - 1.4000 0.92 3472 183 0.1858 0.2215 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5208 REMARK 3 ANGLE : 1.483 7201 REMARK 3 CHIRALITY : 0.158 842 REMARK 3 PLANARITY : 0.008 926 REMARK 3 DIHEDRAL : 13.983 1817 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109811 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 18.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UWF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG8000, 0.5 M LI2SO4, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2138 O HOH C 2080 1.93 REMARK 500 O HOH A 2266 O HOH B 2112 1.97 REMARK 500 OD2 ASP B 37 O HOH A 2258 2.01 REMARK 500 O HOH B 2005 O HOH B 2226 2.07 REMARK 500 O HOH B 2066 O HOH B 2152 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 60 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 87 -79.35 -114.33 REMARK 500 ASN A 96 28.70 -140.37 REMARK 500 THR B 87 -66.48 -105.66 REMARK 500 THR B 87 -68.85 -105.66 REMARK 500 ASN B 138 -159.92 -141.84 REMARK 500 ASN C 138 -159.58 -142.82 REMARK 500 ASN D 138 -158.73 -142.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2029 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2045 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A2047 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2049 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2087 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B2016 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B2017 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B2098 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B2145 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH C2051 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH C2074 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH D2014 DISTANCE = 6.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FYZ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FYZ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FYZ C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FYZ D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ATT RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO REMARK 900 A PROPYNYL PARA METHOXY PHENYL REMARK 900 RELATED ID: 4AUJ RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO REMARK 900 PARA HYDROXYPROPARGYL PHENYL REMARK 900 RELATED ID: 4AUU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO FIMH LECTIN DOMAIN AT 1.5 A RESOLUTION REMARK 900 RELATED ID: 4AUY RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH AN HYDROXYL PROPYNYL PHENYL ALPHA-D-MANNOSIDE AT 2.1 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4AV0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH A METHOXY PHENYL PROPYNYL ALPHA-D-MANNOSIDE AT 2.1 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4AV4 RELATED DB: PDB REMARK 900 FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO REMARK 900 A PROPYNYL PYRIDINE REMARK 900 RELATED ID: 4AVH RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH A THIOALKYL ALPHA-D- MANNOSIDE AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 4AVI RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH A METHYL ESTER OCTYL ALPHA-D-MANNOSIDE AT 2.4 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4AVJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN REMARK 900 COMPLEX WITH A METHANOL TRIAZOL ETHYL PHENYL ALPHA-D-MANNOSIDE AT REMARK 900 2.1 A RESOLUTION REMARK 900 RELATED ID: 4AVK RELATED DB: PDB REMARK 900 STRUCTURE OF TRIGONAL FIMH LECTIN DOMAIN CRYSTAL SOAKED WITH AN REMARK 900 ALPHA-D-MANNOSIDE O-LINKED TO PROPYNYL PYRIDINE AT 2.4A RESOLUTION DBREF 4AV5 A 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 DBREF 4AV5 B 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 DBREF 4AV5 C 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 DBREF 4AV5 D 1 158 UNP A2IC68 A2IC68_ECOLX 10 167 SEQRES 1 A 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 A 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 A 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 A 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 A 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 A 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 A 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 A 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 A 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 A 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 A 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 A 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 A 158 PRO THR SEQRES 1 B 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 B 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 B 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 B 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 B 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 B 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 B 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 B 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 B 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 B 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 B 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 B 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 B 158 PRO THR SEQRES 1 C 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 C 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 C 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 C 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 C 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 C 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 C 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 C 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 C 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 C 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 C 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 C 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 C 158 PRO THR SEQRES 1 D 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 D 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 D 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 D 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 D 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 D 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 D 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 D 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 D 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 D 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 D 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 D 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 D 158 PRO THR HET FYZ A 201 27 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET FYZ B 201 27 HET FYZ C 201 27 HET FYZ D 201 27 HETNAM FYZ (2R,3S,4S,5S,6S)-2-(HYDROXYMETHYL)-6-[3-(4- HETNAM 2 FYZ PHENYLPHENYL)PROP-2-YNOXY]OXANE-3,4,5-TRIOL HETNAM SO4 SULFATE ION FORMUL 5 FYZ 4(C21 H22 O6) FORMUL 6 SO4 3(O4 S 2-) FORMUL 12 HOH *1151(H2 O) HELIX 1 1 SER A 39 GLN A 41 5 3 HELIX 2 2 TYR A 64 ASN A 70 1 7 HELIX 3 3 TYR B 64 ASN B 70 1 7 HELIX 4 4 TYR C 64 ASN C 70 1 7 HELIX 5 5 SER D 39 GLN D 41 5 3 HELIX 6 6 TYR D 64 ASN D 70 1 7 SHEET 1 AA 4 ALA A 10 ILE A 11 0 SHEET 2 AA 4 ALA A 2 LYS A 4 -1 O CYS A 3 N ILE A 11 SHEET 3 AA 4 PHE A 43 HIS A 45 -1 O PHE A 43 N LYS A 4 SHEET 4 AA 4 LYS A 101 PRO A 102 -1 O LYS A 101 N CYS A 44 SHEET 1 AB 5 GLY A 16 VAL A 22 0 SHEET 2 AB 5 PHE A 142 ALA A 150 1 O GLN A 143 N GLY A 16 SHEET 3 AB 5 LEU A 125 ASN A 135 -1 N ILE A 126 O ILE A 148 SHEET 4 AB 5 ASP A 54 ALA A 63 -1 O TYR A 55 N THR A 134 SHEET 5 AB 5 VAL A 93 TYR A 95 -1 O VAL A 93 N VAL A 56 SHEET 1 AC 4 LEU A 34 ASP A 37 0 SHEET 2 AC 4 VAL A 105 PRO A 111 -1 O LEU A 107 N VAL A 36 SHEET 3 AC 4 PHE A 71 TYR A 77 -1 O SER A 72 N THR A 110 SHEET 4 AC 4 SER A 80 PHE A 84 -1 O SER A 80 N TYR A 77 SHEET 1 AD 2 GLY A 117 ILE A 120 0 SHEET 2 AD 2 VAL A 154 VAL A 156 -1 O VAL A 154 N ALA A 119 SHEET 1 BA 4 ALA B 10 ILE B 11 0 SHEET 2 BA 4 ALA B 2 THR B 5 -1 O CYS B 3 N ILE B 11 SHEET 3 BA 4 ILE B 42 HIS B 45 -1 O PHE B 43 N LYS B 4 SHEET 4 BA 4 LYS B 101 PRO B 102 -1 O LYS B 101 N CYS B 44 SHEET 1 BB 5 GLY B 16 VAL B 22 0 SHEET 2 BB 5 PHE B 142 ALA B 150 1 O GLN B 143 N GLY B 16 SHEET 3 BB 5 LEU B 125 ASN B 135 -1 N ILE B 126 O ILE B 148 SHEET 4 BB 5 ASP B 54 ALA B 63 -1 O TYR B 55 N THR B 134 SHEET 5 BB 5 VAL B 93 TYR B 95 -1 O VAL B 93 N VAL B 56 SHEET 1 BC 4 LEU B 34 ASP B 37 0 SHEET 2 BC 4 VAL B 105 PRO B 111 -1 O LEU B 107 N VAL B 36 SHEET 3 BC 4 PHE B 71 TYR B 77 -1 O SER B 72 N THR B 110 SHEET 4 BC 4 SER B 80 PHE B 84 -1 O SER B 80 N TYR B 77 SHEET 1 BD 2 GLY B 117 ILE B 120 0 SHEET 2 BD 2 VAL B 154 VAL B 156 -1 O VAL B 154 N ALA B 119 SHEET 1 CA 4 ALA C 10 ILE C 11 0 SHEET 2 CA 4 ALA C 2 THR C 5 -1 O CYS C 3 N ILE C 11 SHEET 3 CA 4 ILE C 42 HIS C 45 -1 O PHE C 43 N LYS C 4 SHEET 4 CA 4 LYS C 101 PRO C 102 -1 O LYS C 101 N CYS C 44 SHEET 1 CB 5 GLY C 16 VAL C 22 0 SHEET 2 CB 5 PHE C 142 ALA C 150 1 O GLN C 143 N GLY C 16 SHEET 3 CB 5 LEU C 125 ASN C 135 -1 N ILE C 126 O ILE C 148 SHEET 4 CB 5 ASP C 54 ALA C 63 -1 O TYR C 55 N THR C 134 SHEET 5 CB 5 VAL C 93 TYR C 95 -1 O VAL C 93 N VAL C 56 SHEET 1 CC 4 LEU C 34 ASP C 37 0 SHEET 2 CC 4 VAL C 105 PRO C 111 -1 O LEU C 107 N VAL C 36 SHEET 3 CC 4 PHE C 71 TYR C 77 -1 O SER C 72 N THR C 110 SHEET 4 CC 4 SER C 80 PHE C 84 -1 O SER C 80 N TYR C 77 SHEET 1 CD 2 GLY C 117 ILE C 120 0 SHEET 2 CD 2 VAL C 154 VAL C 156 -1 O VAL C 154 N ALA C 119 SHEET 1 DA 4 THR D 9 ILE D 11 0 SHEET 2 DA 4 ALA D 2 ALA D 6 -1 O CYS D 3 N ILE D 11 SHEET 3 DA 4 PHE D 43 HIS D 45 -1 O PHE D 43 N LYS D 4 SHEET 4 DA 4 LYS D 101 PRO D 102 -1 O LYS D 101 N CYS D 44 SHEET 1 DB 5 GLY D 16 VAL D 22 0 SHEET 2 DB 5 PHE D 142 ALA D 150 1 O GLN D 143 N GLY D 16 SHEET 3 DB 5 LEU D 125 ASN D 135 -1 N ILE D 126 O ILE D 148 SHEET 4 DB 5 ASP D 54 ALA D 63 -1 O TYR D 55 N THR D 134 SHEET 5 DB 5 VAL D 93 TYR D 95 -1 O VAL D 93 N VAL D 56 SHEET 1 DC 4 LEU D 34 ASP D 37 0 SHEET 2 DC 4 VAL D 105 PRO D 111 -1 O LEU D 107 N VAL D 36 SHEET 3 DC 4 PHE D 71 TYR D 77 -1 O SER D 72 N THR D 110 SHEET 4 DC 4 SER D 80 PHE D 84 -1 O SER D 80 N TYR D 77 SHEET 1 DD 2 GLY D 117 ILE D 120 0 SHEET 2 DD 2 VAL D 154 VAL D 156 -1 O VAL D 154 N ALA D 119 SSBOND 1 CYS A 3 CYS A 44 1555 1555 2.07 SSBOND 2 CYS B 3 CYS B 44 1555 1555 2.08 SSBOND 3 CYS C 3 CYS C 44 1555 1555 2.09 SSBOND 4 CYS D 3 CYS D 44 1555 1555 2.08 CISPEP 1 PHE A 84 PRO A 85 0 2.03 CISPEP 2 PHE B 84 PRO B 85 0 -0.59 CISPEP 3 PHE C 84 PRO C 85 0 0.55 CISPEP 4 PHE D 84 PRO D 85 0 -2.37 SITE 1 AC1 16 PHE A 1 ILE A 13 ASN A 46 ASP A 47 SITE 2 AC1 16 TYR A 48 ILE A 52 ASP A 54 GLN A 133 SITE 3 AC1 16 ASN A 135 TYR A 137 ASP A 140 PHE A 142 SITE 4 AC1 16 HOH A2001 HOH A2330 ILE D 13 FYZ D 201 SITE 1 AC2 8 LYS A 76 HOH A2136 HOH A2137 HOH C2077 SITE 2 AC2 8 SER D 113 HOH D2165 HOH D2219 HOH A3002 SITE 1 AC3 10 THR A 5 ALA A 6 ASN A 7 GLN A 41 SITE 2 AC3 10 HOH A2018 HOH A2024 HOH A2080 HOH A2081 SITE 3 AC3 10 ARG B 60 GLN B 143 SITE 1 AC4 3 ARG A 92 HOH A2273 HOH A2275 SITE 1 AC5 14 PHE B 1 ILE B 13 ASN B 46 ASP B 47 SITE 2 AC5 14 TYR B 48 ILE B 52 ASP B 54 GLN B 133 SITE 3 AC5 14 ASN B 135 TYR B 137 ASP B 140 HOH B2001 SITE 4 AC5 14 ILE C 13 FYZ C 201 SITE 1 AC6 14 ILE B 13 FYZ B 201 PHE C 1 ILE C 13 SITE 2 AC6 14 ASN C 46 ASP C 47 TYR C 48 ILE C 52 SITE 3 AC6 14 ASP C 54 GLN C 133 ASN C 135 TYR C 137 SITE 4 AC6 14 ASP C 140 HOH C2001 SITE 1 AC7 14 ILE A 13 FYZ A 201 PHE D 1 ILE D 13 SITE 2 AC7 14 ASN D 46 ASP D 47 TYR D 48 ILE D 52 SITE 3 AC7 14 ASP D 54 GLN D 133 ASN D 135 TYR D 137 SITE 4 AC7 14 ASP D 140 HOH D2001 CRYST1 50.750 51.520 67.830 100.32 93.17 116.56 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019704 0.009850 0.003430 0.00000 SCALE2 0.000000 0.021700 0.005088 0.00000 SCALE3 0.000000 0.000000 0.015166 0.00000