HEADER HYDROLASE 06-JUN-12 4AWY TITLE CRYSTAL STRUCTURE OF THE MOBILE METALLO-BETA-LACTAMASE AIM-1 FROM TITLE 2 PSEUDOMONAS AERUGINOSA: INSIGHTS INTO ANTIBIOTIC BINDING AND THE ROLE TITLE 3 OF GLN157 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE AIM-1; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-26B KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE, ACQUIRED B3, DRUG BINDING SITE, KEYWDS 2 INTRAMOLECULAR DISULPHIDE BRIDGES EXPDTA X-RAY DIFFRACTION AUTHOR H.-K.S.LEIROS,P.S.BORRA,B.O.BRANDSDAL,K.S.W.EDVARDSEN,J.SPENCER, AUTHOR 2 T.R.WALSH,O.SAMUELSEN REVDAT 4 20-DEC-23 4AWY 1 REMARK LINK REVDAT 3 20-JUN-18 4AWY 1 LINK REVDAT 2 15-AUG-12 4AWY 1 JRNL REVDAT 1 20-JUN-12 4AWY 0 JRNL AUTH H.-K.S.LEIROS,P.S.BORRA,B.O.BRANDSDAL,K.S.W.EDVARDSEN, JRNL AUTH 2 J.SPENCER,T.R.WALSH,O.SAMUELSEN JRNL TITL CRYSTAL STRUCTURE OF THE MOBILE METALLO-BETA-LACTAMASE AIM-1 JRNL TITL 2 FROM PSEUDOMONAS AERUGINOSA: INSIGHTS INTO ANTIBIOTIC JRNL TITL 3 BINDING AND THE ROLE OF GLN157 JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 56 4341 2012 JRNL REFN ISSN 0066-4804 JRNL PMID 22664968 JRNL DOI 10.1128/AAC.00448-12 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 53538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2005 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2210 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1467 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3028 ; 1.619 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3557 ; 1.029 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 6.412 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;29.036 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;12.610 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2539 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 448 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1450 ; 1.611 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 581 ; 0.556 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2325 ; 2.470 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 760 ; 3.808 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 703 ; 5.475 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3677 ; 1.520 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES, REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SML REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHERS (PEG MME) 2000, 0.1 M CALCIUM ACETATE AND 0.1M SODIUM REMARK 280 CACODYLATE AT PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.67267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 159.34533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.50900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 199.18167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.83633 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.67267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 159.34533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 199.18167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 119.50900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.83633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -276.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -77.83100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 134.80725 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.83633 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN B3235 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 ARG B 5 REMARK 465 PHE B 6 REMARK 465 THR B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 GLY B 10 REMARK 465 SER B 11 REMARK 465 VAL B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 LEU B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 THR B 20 REMARK 465 ALA B 21 REMARK 465 LEU B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 465 ALA B 26 REMARK 465 PRO B 27 REMARK 465 PRO B 313 REMARK 465 SER B 314 REMARK 465 SER B 315 REMARK 465 GLY B 316 REMARK 465 ALA B 317 REMARK 465 ARG B 318 REMARK 465 PRO B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 30 NE CZ NH1 NH2 REMARK 470 ASP B 35 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2076 O HOH B 2077 1.82 REMARK 500 O HOH B 2081 O HOH B 2082 1.98 REMARK 500 O HOH B 2117 O HOH B 2121 2.07 REMARK 500 O HOH B 2341 O HOH B 2342 2.08 REMARK 500 NH1 ARG B 229 O HOH B 2291 2.16 REMARK 500 O HOH B 2031 O HOH B 2265 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR B 57 C CYS B 66 N 0.284 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 57 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 THR B 87 CA - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 PRO B 89 C - N - CA ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG B 276 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 84 161.49 78.27 REMARK 500 ALA B 86 -148.91 52.07 REMARK 500 ALA B 86 -144.55 52.07 REMARK 500 THR B 87 -152.78 -81.76 REMARK 500 SER B 115 -71.21 -78.87 REMARK 500 GLU B 117 36.27 -87.18 REMARK 500 HIS B 236 73.83 -164.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR B 87 -21.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2027 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH B2075 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B2145 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B3230 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 89 O REMARK 620 2 PRO B 89 O 31.3 REMARK 620 3 GLU B 127 OE1 152.4 155.3 REMARK 620 4 GLU B 127 OE1 132.8 163.2 39.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B3232 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 98 OD1 REMARK 620 2 HOH B2022 O 111.2 REMARK 620 3 HOH B2024 O 105.6 115.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B3228 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 100.0 REMARK 620 3 HIS B 196 NE2 100.3 101.1 REMARK 620 4 HOH B2136 O 113.7 112.4 125.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B3229 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 HIS B 121 NE2 91.4 REMARK 620 3 HIS B 263 NE2 94.0 101.9 REMARK 620 4 HOH B2136 O 91.5 110.1 147.3 REMARK 620 5 HOH B2157 O 167.3 100.2 88.7 79.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B3231 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 221 OG REMARK 620 2 HOH B2384 O 86.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B3235 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2260 O REMARK 620 2 HOH B2260 O 136.5 REMARK 620 3 HOH B2262 O 69.0 139.9 REMARK 620 4 HOH B2262 O 139.6 68.0 115.4 REMARK 620 5 HOH B2323 O 75.6 75.0 143.1 85.2 REMARK 620 6 HOH B2323 O 75.9 75.4 86.4 142.1 95.1 REMARK 620 7 HOH B2326 O 79.9 131.8 73.1 64.9 91.0 152.7 REMARK 620 8 HOH B2326 O 133.3 79.4 65.4 72.6 151.0 91.5 96.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B3233 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2330 O REMARK 620 2 HOH B2353 O 85.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 3231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3235 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AWZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MOBILE METALLO-BETA-LACTAMASE AIM-1 FROM REMARK 900 PSEUDOMONAS AERUGINOSA: INSIGHTS INTO ANTIBIOTIC BINDING AND THE REMARK 900 ROLE OF GLN157 REMARK 900 RELATED ID: 4AX0 RELATED DB: PDB REMARK 900 Q157A MUTANT. CRYSTAL STRUCTURE OF THE MOBILE METALLO- BETA- REMARK 900 LACTAMASE AIM-1 FROM PSEUDOMONAS AERUGINOSA: INSIGHTS INTO REMARK 900 ANTIBIOTIC BINDING AND THE ROLE OF GLN157 REMARK 900 RELATED ID: 4AX1 RELATED DB: PDB REMARK 900 Q157N MUTANT. CRYSTAL STRUCTURE OF THE MOBILE METALLO- BETA- REMARK 900 LACTAMASE AIM-1 FROM PSEUDOMONAS AERUGINOSA: INSIGHTS INTO REMARK 900 ANTIBIOTIC BINDING AND THE ROLE OF GLN157 DBREF 4AWY B 2 319 UNP B5DCA0 B5DCA0_PSEAI 1 303 SEQRES 1 B 303 MET LYS ARG ARG PHE THR LEU LEU GLY SER VAL VAL ALA SEQRES 2 B 303 LEU ALA LEU SER SER THR ALA LEU ALA SER ASP ALA PRO SEQRES 3 B 303 ALA SER ARG GLY CYS ALA ASP ASP ALA GLY TRP ASN ASP SEQRES 4 B 303 PRO ALA MET PRO LEU LYS VAL TYR GLY ASN THR TRP TYR SEQRES 5 B 303 VAL GLY THR CYS GLY ILE SER ALA LEU LEU VAL THR SER SEQRES 6 B 303 ASP ALA GLY HIS ILE LEU VAL ASP ALA ALA THR PRO GLN SEQRES 7 B 303 ALA GLY PRO GLN ILE LEU ALA ASN ILE ARG ALA LEU GLY SEQRES 8 B 303 PHE ARG PRO GLU ASP VAL ARG ALA ILE VAL PHE SER HIS SEQRES 9 B 303 GLU HIS PHE ASP HIS ALA GLY SER LEU ALA GLU LEU GLN SEQRES 10 B 303 LYS ALA THR GLY ALA PRO VAL TYR ALA ARG ALA PRO ALA SEQRES 11 B 303 ILE ASP THR LEU LYS ARG GLY LEU PRO ASP ARG THR ASP SEQRES 12 B 303 PRO GLN PHE GLU VAL ALA GLU PRO VAL ALA PRO VAL ALA SEQRES 13 B 303 ASN ILE VAL THR LEU ALA ASP ASP GLY VAL VAL SER VAL SEQRES 14 B 303 GLY PRO LEU ALA LEU THR ALA VAL ALA SER PRO GLY HIS SEQRES 15 B 303 THR PRO GLY GLY THR SER TRP THR TRP ARG SER CYS GLU SEQRES 16 B 303 GLY ASP ASP CYS ARG GLN MET VAL TYR ALA ASP SER LEU SEQRES 17 B 303 THR ALA ILE SER ASP ASP VAL PHE ARG TYR SER ASP ASP SEQRES 18 B 303 ALA ALA HIS PRO GLY TYR LEU ALA ALA PHE ARG ASN THR SEQRES 19 B 303 LEU ALA ARG VAL ALA ALA LEU ASP CYS ASP ILE LEU VAL SEQRES 20 B 303 THR PRO HIS PRO SER ALA SER GLY LEU TRP ASN ARG ILE SEQRES 21 B 303 GLY PRO ARG ALA ALA ALA PRO LEU MET ASP THR THR ALA SEQRES 22 B 303 CYS ARG ARG TYR ALA GLN GLY ALA ARG GLN ARG LEU GLU SEQRES 23 B 303 LYS ARG LEU ALA GLU GLU ALA ALA THR SER PRO SER SER SEQRES 24 B 303 GLY ALA ARG PRO HET ZN B3228 1 HET ZN B3229 1 HET MG B3230 1 HET CA B3231 1 HET MG B3232 1 HET MG B3233 1 HET MG B3234 1 HET ZN B3235 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION FORMUL 2 ZN 3(ZN 2+) FORMUL 4 MG 4(MG 2+) FORMUL 5 CA CA 2+ FORMUL 10 HOH *385(H2 O) HELIX 1 1 ALA B 91 LEU B 102 1 12 HELIX 2 2 ARG B 105 GLU B 107 5 3 HELIX 3 3 HIS B 118 GLY B 123 1 6 HELIX 4 4 SER B 124 GLY B 133 1 10 HELIX 5 5 ALA B 142 GLY B 149 1 8 HELIX 6 6 GLN B 157 ALA B 161 5 5 HELIX 7 7 ASP B 232 HIS B 236 5 5 HELIX 8 8 GLY B 238 LEU B 254 1 16 HELIX 9 9 HIS B 263 GLY B 268 5 6 HELIX 10 10 GLY B 268 ARG B 272 5 5 HELIX 11 11 THR B 288 ALA B 310 1 23 SHEET 1 BA 5 LEU B 45 TYR B 49 0 SHEET 2 BA 5 THR B 52 TYR B 54 -1 O THR B 52 N VAL B 48 SHEET 3 BA 5 LEU B 71 VAL B 73 -1 O LEU B 72 N TRP B 53 SHEET 4 BA 5 HIS B 80 VAL B 83 -1 O ILE B 81 N VAL B 73 SHEET 5 BA 5 VAL B 109 VAL B 113 1 N ARG B 110 O HIS B 80 SHEET 1 BB 2 VAL B 136 ARG B 139 0 SHEET 2 BB 2 ILE B 171 LEU B 174 1 O VAL B 172 N ALA B 138 SHEET 1 BC 5 VAL B 179 VAL B 182 0 SHEET 2 BC 5 LEU B 185 ALA B 191 -1 O LEU B 185 N VAL B 182 SHEET 3 BC 5 THR B 201 GLU B 209 -1 O SER B 202 N VAL B 190 SHEET 4 BC 5 ASP B 212 TYR B 218 -1 O ASP B 212 N GLU B 209 SHEET 5 BC 5 ILE B 258 VAL B 260 1 O ILE B 258 N VAL B 217 SSBOND 1 CYS B 32 CYS B 66 1555 1555 2.04 SSBOND 2 CYS B 208 CYS B 213 1555 1555 2.15 SSBOND 3 CYS B 256 CYS B 290 1555 1555 2.05 LINK O APRO B 89 MG MG B3230 1555 1555 2.24 LINK O BPRO B 89 MG MG B3230 1555 1555 2.79 LINK OD1 ASN B 98 MG MG B3232 1555 1555 2.54 LINK NE2 HIS B 116 ZN ZN B3228 1555 1555 2.06 LINK ND1 HIS B 118 ZN ZN B3228 1555 1555 2.10 LINK OD2 ASP B 120 ZN ZN B3229 1555 1555 2.12 LINK NE2 HIS B 121 ZN ZN B3229 1555 1555 2.09 LINK OE1AGLU B 127 MG MG B3230 1555 1555 2.30 LINK OE1BGLU B 127 MG MG B3230 1555 1555 2.75 LINK NE2 HIS B 196 ZN ZN B3228 1555 1555 2.02 LINK OG SER B 221 CA CA B3231 1555 1555 2.99 LINK NE2 HIS B 263 ZN ZN B3229 1555 1555 2.03 LINK O HOH B2022 MG MG B3232 1555 1555 2.68 LINK O HOH B2024 MG MG B3232 1555 1555 2.83 LINK O HOH B2136 ZN ZN B3228 1555 1555 1.94 LINK O HOH B2136 ZN ZN B3229 1555 1555 1.98 LINK O HOH B2157 ZN ZN B3229 1555 1555 2.27 LINK O HOH B2189 MG MG B3234 1555 1555 2.65 LINK O HOH B2260 ZN ZN B3235 1555 1555 2.42 LINK O HOH B2260 ZN ZN B3235 12575 1555 2.45 LINK O HOH B2262 ZN ZN B3235 1555 1555 2.50 LINK O HOH B2262 ZN ZN B3235 12575 1555 2.53 LINK O HOH B2323 ZN ZN B3235 1555 1555 2.40 LINK O HOH B2323 ZN ZN B3235 12575 1555 2.38 LINK O HOH B2326 ZN ZN B3235 1555 1555 2.44 LINK O HOH B2326 ZN ZN B3235 12575 1555 2.44 LINK O HOH B2330 MG MG B3233 1555 1555 2.89 LINK O HOH B2353 MG MG B3233 1555 1555 2.72 LINK O HOH B2384 CA CA B3231 1555 1555 2.90 SITE 1 AC1 6 HIS B 116 HIS B 118 HIS B 196 HOH B2136 SITE 2 AC1 6 HOH B2157 ZN B3229 SITE 1 AC2 6 ASP B 120 HIS B 121 HIS B 263 HOH B2136 SITE 2 AC2 6 HOH B2157 ZN B3228 SITE 1 AC3 5 PRO B 89 GLN B 90 GLY B 92 SER B 124 SITE 2 AC3 5 GLU B 127 SITE 1 AC4 4 SER B 221 PRO B 262 HIS B 263 HOH B2384 SITE 1 AC5 4 ALA B 42 ASN B 98 HOH B2022 HOH B2024 SITE 1 AC6 4 ALA B 266 TYR B 293 HOH B2330 HOH B2353 SITE 1 AC7 6 THR B 145 ARG B 148 ASP B 152 HOH B2189 SITE 2 AC7 6 HOH B2194 HOH B2204 SITE 1 AC8 4 HOH B2260 HOH B2262 HOH B2323 HOH B2326 CRYST1 77.831 77.831 239.018 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012848 0.007418 0.000000 0.00000 SCALE2 0.000000 0.014836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004184 0.00000