data_4AX2 # _entry.id 4AX2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4AX2 PDBE EBI-52810 WWPDB D_1290052810 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AX2 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-06-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'English, G.' 1 'Trunk, K.' 2 'Rao, V.A.' 3 'Srikannathasan, V.' 4 'Fritsch, M.J.' 5 'Guo, M.' 6 'Hunter, W.N.' 7 'Coulthurst, S.J.' 8 # _citation.id primary _citation.title 'New Secreted Toxins and Immunity Proteins Encoded within the Type Vi Secretion System Gene Cluster of Serratia Marcescens' _citation.journal_abbrev Mol.Microbiol. _citation.journal_volume 86 _citation.page_first 921 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM MOMIEE _citation.country UK _citation.journal_id_ISSN 0950-382X _citation.journal_id_CSD 2007 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22957938 _citation.pdbx_database_id_DOI 10.1111/MMI.12028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'English, G.' 1 primary 'Trunk, K.' 2 primary 'Rao, V.A.' 3 primary 'Srikannathasan, V.' 4 primary 'Hunter, W.N.' 5 primary 'Coulthurst, S.J.' 6 # _cell.entry_id 4AX2 _cell.length_a 77.970 _cell.length_b 77.970 _cell.length_c 50.550 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AX2 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man RAP1B 16364.356 1 ? ? ? ? 2 non-polymer syn 'IODIDE ION' 126.904 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 water nat water 18.015 111 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHHSSGENLYFQGHMAPIQDPVAFIKQMPYHQVVKELALSRCLAQVSDSDKAFSLDAARTANAMREWMPFDIESGDE KINVLIDKYKSRINEFHSETKDKSQGVTLNCLRLYHSPELDKLSRQLIAGNPDRTWNQDNAK ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHSSGENLYFQGHMAPIQDPVAFIKQMPYHQVVKELALSRCLAQVSDSDKAFSLDAARTANAMREWMPFDIESGDE KINVLIDKYKSRINEFHSETKDKSQGVTLNCLRLYHSPELDKLSRQLIAGNPDRTWNQDNAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 SER n 1 8 SER n 1 9 GLY n 1 10 GLU n 1 11 ASN n 1 12 LEU n 1 13 TYR n 1 14 PHE n 1 15 GLN n 1 16 GLY n 1 17 HIS n 1 18 MET n 1 19 ALA n 1 20 PRO n 1 21 ILE n 1 22 GLN n 1 23 ASP n 1 24 PRO n 1 25 VAL n 1 26 ALA n 1 27 PHE n 1 28 ILE n 1 29 LYS n 1 30 GLN n 1 31 MET n 1 32 PRO n 1 33 TYR n 1 34 HIS n 1 35 GLN n 1 36 VAL n 1 37 VAL n 1 38 LYS n 1 39 GLU n 1 40 LEU n 1 41 ALA n 1 42 LEU n 1 43 SER n 1 44 ARG n 1 45 CYS n 1 46 LEU n 1 47 ALA n 1 48 GLN n 1 49 VAL n 1 50 SER n 1 51 ASP n 1 52 SER n 1 53 ASP n 1 54 LYS n 1 55 ALA n 1 56 PHE n 1 57 SER n 1 58 LEU n 1 59 ASP n 1 60 ALA n 1 61 ALA n 1 62 ARG n 1 63 THR n 1 64 ALA n 1 65 ASN n 1 66 ALA n 1 67 MET n 1 68 ARG n 1 69 GLU n 1 70 TRP n 1 71 MET n 1 72 PRO n 1 73 PHE n 1 74 ASP n 1 75 ILE n 1 76 GLU n 1 77 SER n 1 78 GLY n 1 79 ASP n 1 80 GLU n 1 81 LYS n 1 82 ILE n 1 83 ASN n 1 84 VAL n 1 85 LEU n 1 86 ILE n 1 87 ASP n 1 88 LYS n 1 89 TYR n 1 90 LYS n 1 91 SER n 1 92 ARG n 1 93 ILE n 1 94 ASN n 1 95 GLU n 1 96 PHE n 1 97 HIS n 1 98 SER n 1 99 GLU n 1 100 THR n 1 101 LYS n 1 102 ASP n 1 103 LYS n 1 104 SER n 1 105 GLN n 1 106 GLY n 1 107 VAL n 1 108 THR n 1 109 LEU n 1 110 ASN n 1 111 CYS n 1 112 LEU n 1 113 ARG n 1 114 LEU n 1 115 TYR n 1 116 HIS n 1 117 SER n 1 118 PRO n 1 119 GLU n 1 120 LEU n 1 121 ASP n 1 122 LYS n 1 123 LEU n 1 124 SER n 1 125 ARG n 1 126 GLN n 1 127 LEU n 1 128 ILE n 1 129 ALA n 1 130 GLY n 1 131 ASN n 1 132 PRO n 1 133 ASP n 1 134 ARG n 1 135 THR n 1 136 TRP n 1 137 ASN n 1 138 GLN n 1 139 ASP n 1 140 ASN n 1 141 ALA n 1 142 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DB10 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SERRATIA MARCESCENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 615 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'ROSETTA-GAMI (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15BTEV_PSC503 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4AX2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 4AX2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4AX2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4AX2 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 10 _struct_ref_seq.pdbx_auth_seq_align_end 151 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4AX2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 51 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.55M LI2SO4, 5% PEG 8000, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU IMAGE PLATE' _diffrn_detector.pdbx_collection_date 2011-03-24 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SILICON _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AX2 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 67.50 _reflns.d_resolution_high 1.88 _reflns.number_obs 14813 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.60 _reflns.B_iso_Wilson_estimate 28.3 _reflns.pdbx_redundancy 11 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.88 _reflns_shell.d_res_low 1.98 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.90 _reflns_shell.pdbx_redundancy 10.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AX2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14043 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 67.52 _refine.ls_d_res_high 1.88 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.18187 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18002 _refine.ls_R_factor_R_free 0.21898 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 748 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 21.1 _refine.aniso_B[1][1] -1.39 _refine.aniso_B[2][2] -1.39 _refine.aniso_B[3][3] 2.09 _refine.aniso_B[1][2] -0.70 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.123 _refine.pdbx_overall_ESU_R_Free 0.122 _refine.overall_SU_ML 0.072 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.609 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 993 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1126 _refine_hist.d_res_high 1.88 _refine_hist.d_res_low 67.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.020 ? 1091 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 795 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.249 1.960 ? 1462 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.888 3.006 ? 1917 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.112 5.000 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.476 25.345 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.059 15.000 ? 218 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.066 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.077 0.200 ? 160 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 1154 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 197 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.877 _refine_ls_shell.d_res_low 1.926 _refine_ls_shell.number_reflns_R_work 940 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.334 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4AX2 _struct.title 'New Type VI-secreted toxins and self-resistance proteins in Serratia marcescens' _struct.pdbx_descriptor RAP1B _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AX2 _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, RESISTANCE PROTEIN, HELICAL FOLD, S-SAD PHASING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 25 ? GLN A 30 ? VAL A 34 GLN A 39 1 ? 6 HELX_P HELX_P2 2 PRO A 32 ? SER A 50 ? PRO A 41 SER A 59 1 ? 19 HELX_P HELX_P3 3 LYS A 54 ? ARG A 68 ? LYS A 63 ARG A 77 1 ? 15 HELX_P HELX_P4 4 GLU A 69 ? MET A 71 ? GLU A 78 MET A 80 5 ? 3 HELX_P HELX_P5 5 ASP A 74 ? LYS A 90 ? ASP A 83 LYS A 99 1 ? 17 HELX_P HELX_P6 6 GLY A 106 ? SER A 117 ? GLY A 115 SER A 126 1 ? 12 HELX_P HELX_P7 7 SER A 117 ? LEU A 127 ? SER A 126 LEU A 136 1 ? 11 HELX_P HELX_P8 8 THR A 135 ? ALA A 141 ? THR A 144 ALA A 150 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 45 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 111 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 54 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 120 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1151' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE IOD A 1152' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 1153' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 1154' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 1155' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 1156' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 1157' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS A 97 ? HIS A 106 . ? 6_555 ? 2 AC1 2 HOH I . ? HOH A 2008 . ? 1_555 ? 3 AC2 6 ARG A 44 ? ARG A 53 . ? 1_555 ? 4 AC2 6 ARG A 68 ? ARG A 77 . ? 1_555 ? 5 AC2 6 PHE A 73 ? PHE A 82 . ? 1_555 ? 6 AC2 6 ILE A 75 ? ILE A 84 . ? 1_555 ? 7 AC2 6 ASP A 79 ? ASP A 88 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH A 2028 . ? 1_555 ? 9 AC3 2 ASN A 131 ? ASN A 140 . ? 1_555 ? 10 AC3 2 ARG A 134 ? ARG A 143 . ? 1_555 ? 11 AC4 3 ARG A 125 ? ARG A 134 . ? 1_555 ? 12 AC4 3 ASP A 133 ? ASP A 142 . ? 1_555 ? 13 AC4 3 HOH I . ? HOH A 2021 . ? 1_555 ? 14 AC5 5 LYS A 38 ? LYS A 47 . ? 1_555 ? 15 AC5 5 HIS A 116 ? HIS A 125 . ? 1_555 ? 16 AC5 5 HOH I . ? HOH A 2024 . ? 1_555 ? 17 AC5 5 HOH I . ? HOH A 2080 . ? 6_555 ? 18 AC5 5 HOH I . ? HOH A 2080 . ? 1_555 ? 19 AC6 5 TYR A 89 ? TYR A 98 . ? 1_555 ? 20 AC6 5 GLU A 119 ? GLU A 128 . ? 1_555 ? 21 AC6 5 HOH I . ? HOH A 2079 . ? 1_555 ? 22 AC6 5 HOH I . ? HOH A 2087 . ? 1_555 ? 23 AC6 5 HOH I . ? HOH A 2111 . ? 1_555 ? 24 AC7 2 ARG A 62 ? ARG A 71 . ? 1_555 ? 25 AC7 2 HOH I . ? HOH A 2109 . ? 2_665 ? # _database_PDB_matrix.entry_id 4AX2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AX2 _atom_sites.fract_transf_matrix[1][1] 0.012825 _atom_sites.fract_transf_matrix[1][2] 0.007405 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014810 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019782 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 10 ? ? ? A . n A 1 2 HIS 2 11 ? ? ? A . n A 1 3 HIS 3 12 ? ? ? A . n A 1 4 HIS 4 13 ? ? ? A . n A 1 5 HIS 5 14 ? ? ? A . n A 1 6 HIS 6 15 ? ? ? A . n A 1 7 SER 7 16 ? ? ? A . n A 1 8 SER 8 17 ? ? ? A . n A 1 9 GLY 9 18 ? ? ? A . n A 1 10 GLU 10 19 ? ? ? A . n A 1 11 ASN 11 20 ? ? ? A . n A 1 12 LEU 12 21 ? ? ? A . n A 1 13 TYR 13 22 ? ? ? A . n A 1 14 PHE 14 23 ? ? ? A . n A 1 15 GLN 15 24 24 GLN GLN A . n A 1 16 GLY 16 25 25 GLY GLY A . n A 1 17 HIS 17 26 26 HIS HIS A . n A 1 18 MET 18 27 27 MET MET A . n A 1 19 ALA 19 28 28 ALA ALA A . n A 1 20 PRO 20 29 29 PRO PRO A . n A 1 21 ILE 21 30 30 ILE ILE A . n A 1 22 GLN 22 31 31 GLN GLN A . n A 1 23 ASP 23 32 32 ASP ASP A . n A 1 24 PRO 24 33 33 PRO PRO A . n A 1 25 VAL 25 34 34 VAL VAL A . n A 1 26 ALA 26 35 35 ALA ALA A . n A 1 27 PHE 27 36 36 PHE PHE A . n A 1 28 ILE 28 37 37 ILE ILE A . n A 1 29 LYS 29 38 38 LYS LYS A . n A 1 30 GLN 30 39 39 GLN GLN A . n A 1 31 MET 31 40 40 MET MET A . n A 1 32 PRO 32 41 41 PRO PRO A . n A 1 33 TYR 33 42 42 TYR TYR A . n A 1 34 HIS 34 43 43 HIS HIS A . n A 1 35 GLN 35 44 44 GLN GLN A . n A 1 36 VAL 36 45 45 VAL VAL A . n A 1 37 VAL 37 46 46 VAL VAL A . n A 1 38 LYS 38 47 47 LYS LYS A . n A 1 39 GLU 39 48 48 GLU GLU A . n A 1 40 LEU 40 49 49 LEU LEU A . n A 1 41 ALA 41 50 50 ALA ALA A . n A 1 42 LEU 42 51 51 LEU LEU A . n A 1 43 SER 43 52 52 SER SER A . n A 1 44 ARG 44 53 53 ARG ARG A . n A 1 45 CYS 45 54 54 CYS CYS A . n A 1 46 LEU 46 55 55 LEU LEU A . n A 1 47 ALA 47 56 56 ALA ALA A . n A 1 48 GLN 48 57 57 GLN GLN A . n A 1 49 VAL 49 58 58 VAL VAL A . n A 1 50 SER 50 59 59 SER SER A . n A 1 51 ASP 51 60 60 ASP ASP A . n A 1 52 SER 52 61 61 SER SER A . n A 1 53 ASP 53 62 62 ASP ASP A . n A 1 54 LYS 54 63 63 LYS LYS A . n A 1 55 ALA 55 64 64 ALA ALA A . n A 1 56 PHE 56 65 65 PHE PHE A . n A 1 57 SER 57 66 66 SER SER A . n A 1 58 LEU 58 67 67 LEU LEU A . n A 1 59 ASP 59 68 68 ASP ASP A . n A 1 60 ALA 60 69 69 ALA ALA A . n A 1 61 ALA 61 70 70 ALA ALA A . n A 1 62 ARG 62 71 71 ARG ARG A . n A 1 63 THR 63 72 72 THR THR A . n A 1 64 ALA 64 73 73 ALA ALA A . n A 1 65 ASN 65 74 74 ASN ASN A . n A 1 66 ALA 66 75 75 ALA ALA A . n A 1 67 MET 67 76 76 MET MET A . n A 1 68 ARG 68 77 77 ARG ARG A . n A 1 69 GLU 69 78 78 GLU GLU A . n A 1 70 TRP 70 79 79 TRP TRP A . n A 1 71 MET 71 80 80 MET MET A . n A 1 72 PRO 72 81 81 PRO PRO A . n A 1 73 PHE 73 82 82 PHE PHE A . n A 1 74 ASP 74 83 83 ASP ASP A . n A 1 75 ILE 75 84 84 ILE ILE A . n A 1 76 GLU 76 85 85 GLU GLU A . n A 1 77 SER 77 86 86 SER SER A . n A 1 78 GLY 78 87 87 GLY GLY A . n A 1 79 ASP 79 88 88 ASP ASP A . n A 1 80 GLU 80 89 89 GLU GLU A . n A 1 81 LYS 81 90 90 LYS LYS A . n A 1 82 ILE 82 91 91 ILE ILE A . n A 1 83 ASN 83 92 92 ASN ASN A . n A 1 84 VAL 84 93 93 VAL VAL A . n A 1 85 LEU 85 94 94 LEU LEU A . n A 1 86 ILE 86 95 95 ILE ILE A . n A 1 87 ASP 87 96 96 ASP ASP A . n A 1 88 LYS 88 97 97 LYS LYS A . n A 1 89 TYR 89 98 98 TYR TYR A . n A 1 90 LYS 90 99 99 LYS LYS A . n A 1 91 SER 91 100 100 SER SER A . n A 1 92 ARG 92 101 101 ARG ARG A . n A 1 93 ILE 93 102 102 ILE ILE A . n A 1 94 ASN 94 103 103 ASN ASN A . n A 1 95 GLU 95 104 104 GLU GLU A . n A 1 96 PHE 96 105 105 PHE PHE A . n A 1 97 HIS 97 106 106 HIS HIS A . n A 1 98 SER 98 107 107 SER SER A . n A 1 99 GLU 99 108 ? ? ? A . n A 1 100 THR 100 109 ? ? ? A . n A 1 101 LYS 101 110 ? ? ? A . n A 1 102 ASP 102 111 ? ? ? A . n A 1 103 LYS 103 112 112 LYS LYS A . n A 1 104 SER 104 113 113 SER SER A . n A 1 105 GLN 105 114 114 GLN GLN A . n A 1 106 GLY 106 115 115 GLY GLY A . n A 1 107 VAL 107 116 116 VAL VAL A . n A 1 108 THR 108 117 117 THR THR A . n A 1 109 LEU 109 118 118 LEU LEU A . n A 1 110 ASN 110 119 119 ASN ASN A . n A 1 111 CYS 111 120 120 CYS CYS A . n A 1 112 LEU 112 121 121 LEU LEU A . n A 1 113 ARG 113 122 122 ARG ARG A . n A 1 114 LEU 114 123 123 LEU LEU A . n A 1 115 TYR 115 124 124 TYR TYR A . n A 1 116 HIS 116 125 125 HIS HIS A . n A 1 117 SER 117 126 126 SER SER A . n A 1 118 PRO 118 127 127 PRO PRO A . n A 1 119 GLU 119 128 128 GLU GLU A . n A 1 120 LEU 120 129 129 LEU LEU A . n A 1 121 ASP 121 130 130 ASP ASP A . n A 1 122 LYS 122 131 131 LYS LYS A . n A 1 123 LEU 123 132 132 LEU LEU A . n A 1 124 SER 124 133 133 SER SER A . n A 1 125 ARG 125 134 134 ARG ARG A . n A 1 126 GLN 126 135 135 GLN GLN A . n A 1 127 LEU 127 136 136 LEU LEU A . n A 1 128 ILE 128 137 137 ILE ILE A . n A 1 129 ALA 129 138 138 ALA ALA A . n A 1 130 GLY 130 139 139 GLY GLY A . n A 1 131 ASN 131 140 140 ASN ASN A . n A 1 132 PRO 132 141 141 PRO PRO A . n A 1 133 ASP 133 142 142 ASP ASP A . n A 1 134 ARG 134 143 143 ARG ARG A . n A 1 135 THR 135 144 144 THR THR A . n A 1 136 TRP 136 145 145 TRP TRP A . n A 1 137 ASN 137 146 146 ASN ASN A . n A 1 138 GLN 138 147 147 GLN GLN A . n A 1 139 ASP 139 148 148 ASP ASP A . n A 1 140 ASN 140 149 149 ASN ASN A . n A 1 141 ALA 141 150 150 ALA ALA A . n A 1 142 LYS 142 151 151 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 1151 1151 IOD IOD A . C 2 IOD 1 1152 1152 IOD IOD A . D 3 EDO 1 1153 1153 EDO EDO A . E 3 EDO 1 1154 1154 EDO EDO A . F 3 EDO 1 1155 1155 EDO EDO A . G 3 EDO 1 1156 1156 EDO EDO A . H 3 EDO 1 1157 1157 EDO EDO A . I 4 HOH 1 2001 2001 HOH HOH A . I 4 HOH 2 2002 2002 HOH HOH A . I 4 HOH 3 2003 2003 HOH HOH A . I 4 HOH 4 2004 2004 HOH HOH A . I 4 HOH 5 2005 2005 HOH HOH A . I 4 HOH 6 2006 2006 HOH HOH A . I 4 HOH 7 2007 2007 HOH HOH A . I 4 HOH 8 2008 2008 HOH HOH A . I 4 HOH 9 2009 2009 HOH HOH A . I 4 HOH 10 2010 2010 HOH HOH A . I 4 HOH 11 2011 2011 HOH HOH A . I 4 HOH 12 2012 2012 HOH HOH A . I 4 HOH 13 2013 2013 HOH HOH A . I 4 HOH 14 2014 2014 HOH HOH A . I 4 HOH 15 2015 2015 HOH HOH A . I 4 HOH 16 2016 2016 HOH HOH A . I 4 HOH 17 2017 2017 HOH HOH A . I 4 HOH 18 2018 2018 HOH HOH A . I 4 HOH 19 2019 2019 HOH HOH A . I 4 HOH 20 2020 2020 HOH HOH A . I 4 HOH 21 2021 2021 HOH HOH A . I 4 HOH 22 2022 2022 HOH HOH A . I 4 HOH 23 2023 2023 HOH HOH A . I 4 HOH 24 2024 2024 HOH HOH A . I 4 HOH 25 2025 2025 HOH HOH A . I 4 HOH 26 2026 2026 HOH HOH A . I 4 HOH 27 2027 2027 HOH HOH A . I 4 HOH 28 2028 2028 HOH HOH A . I 4 HOH 29 2029 2029 HOH HOH A . I 4 HOH 30 2030 2030 HOH HOH A . I 4 HOH 31 2031 2031 HOH HOH A . I 4 HOH 32 2032 2032 HOH HOH A . I 4 HOH 33 2033 2033 HOH HOH A . I 4 HOH 34 2034 2034 HOH HOH A . I 4 HOH 35 2035 2035 HOH HOH A . I 4 HOH 36 2036 2036 HOH HOH A . I 4 HOH 37 2037 2037 HOH HOH A . I 4 HOH 38 2038 2038 HOH HOH A . I 4 HOH 39 2039 2039 HOH HOH A . I 4 HOH 40 2040 2040 HOH HOH A . I 4 HOH 41 2041 2041 HOH HOH A . I 4 HOH 42 2042 2042 HOH HOH A . I 4 HOH 43 2043 2043 HOH HOH A . I 4 HOH 44 2044 2044 HOH HOH A . I 4 HOH 45 2045 2045 HOH HOH A . I 4 HOH 46 2046 2046 HOH HOH A . I 4 HOH 47 2047 2047 HOH HOH A . I 4 HOH 48 2048 2048 HOH HOH A . I 4 HOH 49 2049 2049 HOH HOH A . I 4 HOH 50 2050 2050 HOH HOH A . I 4 HOH 51 2051 2051 HOH HOH A . I 4 HOH 52 2052 2052 HOH HOH A . I 4 HOH 53 2053 2053 HOH HOH A . I 4 HOH 54 2054 2054 HOH HOH A . I 4 HOH 55 2055 2055 HOH HOH A . I 4 HOH 56 2056 2056 HOH HOH A . I 4 HOH 57 2057 2057 HOH HOH A . I 4 HOH 58 2058 2058 HOH HOH A . I 4 HOH 59 2059 2059 HOH HOH A . I 4 HOH 60 2060 2060 HOH HOH A . I 4 HOH 61 2061 2061 HOH HOH A . I 4 HOH 62 2062 2062 HOH HOH A . I 4 HOH 63 2063 2063 HOH HOH A . I 4 HOH 64 2064 2064 HOH HOH A . I 4 HOH 65 2065 2065 HOH HOH A . I 4 HOH 66 2066 2066 HOH HOH A . I 4 HOH 67 2067 2067 HOH HOH A . I 4 HOH 68 2068 2068 HOH HOH A . I 4 HOH 69 2069 2069 HOH HOH A . I 4 HOH 70 2070 2070 HOH HOH A . I 4 HOH 71 2071 2071 HOH HOH A . I 4 HOH 72 2072 2072 HOH HOH A . I 4 HOH 73 2073 2073 HOH HOH A . I 4 HOH 74 2074 2074 HOH HOH A . I 4 HOH 75 2075 2075 HOH HOH A . I 4 HOH 76 2076 2076 HOH HOH A . I 4 HOH 77 2077 2077 HOH HOH A . I 4 HOH 78 2078 2078 HOH HOH A . I 4 HOH 79 2079 2079 HOH HOH A . I 4 HOH 80 2080 2080 HOH HOH A . I 4 HOH 81 2081 2081 HOH HOH A . I 4 HOH 82 2082 2082 HOH HOH A . I 4 HOH 83 2083 2083 HOH HOH A . I 4 HOH 84 2084 2084 HOH HOH A . I 4 HOH 85 2085 2085 HOH HOH A . I 4 HOH 86 2086 2086 HOH HOH A . I 4 HOH 87 2087 2087 HOH HOH A . I 4 HOH 88 2088 2088 HOH HOH A . I 4 HOH 89 2089 2089 HOH HOH A . I 4 HOH 90 2090 2090 HOH HOH A . I 4 HOH 91 2091 2091 HOH HOH A . I 4 HOH 92 2092 2092 HOH HOH A . I 4 HOH 93 2093 2093 HOH HOH A . I 4 HOH 94 2094 2094 HOH HOH A . I 4 HOH 95 2095 2095 HOH HOH A . I 4 HOH 96 2096 2096 HOH HOH A . I 4 HOH 97 2097 2097 HOH HOH A . I 4 HOH 98 2098 2098 HOH HOH A . I 4 HOH 99 2099 2099 HOH HOH A . I 4 HOH 100 2100 2100 HOH HOH A . I 4 HOH 101 2101 2101 HOH HOH A . I 4 HOH 102 2102 2102 HOH HOH A . I 4 HOH 103 2103 2103 HOH HOH A . I 4 HOH 104 2104 2104 HOH HOH A . I 4 HOH 105 2105 2105 HOH HOH A . I 4 HOH 106 2106 2106 HOH HOH A . I 4 HOH 107 2107 2107 HOH HOH A . I 4 HOH 108 2108 2108 HOH HOH A . I 4 HOH 109 2109 2109 HOH HOH A . I 4 HOH 110 2110 2110 HOH HOH A . I 4 HOH 111 2111 2111 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5260 ? 1 MORE -31.3 ? 1 'SSA (A^2)' 13290 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 16.8500000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-19 2 'Structure model' 1 1 2012-12-19 3 'Structure model' 1 2 2013-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -13.0715 _pdbx_refine_tls.origin_y 38.0344 _pdbx_refine_tls.origin_z 9.0678 _pdbx_refine_tls.T[1][1] 0.0070 _pdbx_refine_tls.T[2][2] 0.0486 _pdbx_refine_tls.T[3][3] 0.0682 _pdbx_refine_tls.T[1][2] -0.0172 _pdbx_refine_tls.T[1][3] -0.0001 _pdbx_refine_tls.T[2][3] -0.0149 _pdbx_refine_tls.L[1][1] 1.3468 _pdbx_refine_tls.L[2][2] 1.6878 _pdbx_refine_tls.L[3][3] 1.5682 _pdbx_refine_tls.L[1][2] 0.5780 _pdbx_refine_tls.L[1][3] -0.1574 _pdbx_refine_tls.L[2][3] -0.5675 _pdbx_refine_tls.S[1][1] 0.0188 _pdbx_refine_tls.S[1][2] -0.0764 _pdbx_refine_tls.S[1][3] -0.0304 _pdbx_refine_tls.S[2][1] -0.0330 _pdbx_refine_tls.S[2][2] 0.0734 _pdbx_refine_tls.S[2][3] -0.0582 _pdbx_refine_tls.S[3][1] -0.0358 _pdbx_refine_tls.S[3][2] 0.0770 _pdbx_refine_tls.S[3][3] -0.0921 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 24 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 151 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHENIX phasing . ? 4 # _pdbx_entry_details.entry_id 4AX2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;IODIDE ION (IOD): HALIDE SOAK. IODIDES USED FOR SAD PHASING ALONG WITH S ATOMS. ; _pdbx_entry_details.sequence_details 'GENOME IS NOT YET IN ANY DATABASE' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2033 ? ? O A HOH 2036 ? ? 2.00 2 1 NE2 A GLN 114 ? B O A HOH 2078 ? ? 2.11 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 62 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -93.03 _pdbx_validate_torsion.psi 34.21 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 10 ? A HIS 1 2 1 Y 1 A HIS 11 ? A HIS 2 3 1 Y 1 A HIS 12 ? A HIS 3 4 1 Y 1 A HIS 13 ? A HIS 4 5 1 Y 1 A HIS 14 ? A HIS 5 6 1 Y 1 A HIS 15 ? A HIS 6 7 1 Y 1 A SER 16 ? A SER 7 8 1 Y 1 A SER 17 ? A SER 8 9 1 Y 1 A GLY 18 ? A GLY 9 10 1 Y 1 A GLU 19 ? A GLU 10 11 1 Y 1 A ASN 20 ? A ASN 11 12 1 Y 1 A LEU 21 ? A LEU 12 13 1 Y 1 A TYR 22 ? A TYR 13 14 1 Y 1 A PHE 23 ? A PHE 14 15 1 Y 1 A GLU 108 ? A GLU 99 16 1 Y 1 A THR 109 ? A THR 100 17 1 Y 1 A LYS 110 ? A LYS 101 18 1 Y 1 A ASP 111 ? A ASP 102 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 1,2-ETHANEDIOL EDO 4 water HOH #