HEADER IMMUNE SYSTEM 21-JUN-12 4AYN TITLE STRUCTURE OF THE C-TERMINAL BARREL OF NEISSERIA MENINGITIDIS FHBP TITLE 2 VARIANT 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FACTOR H-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 27-273; COMPND 5 SYNONYM: FACTOR H BINDING PROTEIN V2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS MC58; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 VARIANT: P22; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-21A KEYWDS IMMUNE SYSTEM, ANTIGENS, COMPLEMENT FACTOR H, VACCINES EXPDTA X-RAY DIFFRACTION AUTHOR S.JOHNSON,L.TAN,S.VAN DER VEEN,J.CAESAR,E.GOICOECHEA DE JORGE, AUTHOR 2 R.J.EVERETT,X.BAI,R.M.EXLEY,P.N.WARD,N.RUIVO,K.TRIVEDI,E.CUMBER, AUTHOR 3 R.JONES,L.NEWHAM,D.STAUNTON,R.BORROW,M.PICKERING,S.M.LEA,C.M.TANG REVDAT 4 20-DEC-23 4AYN 1 REMARK REVDAT 3 25-MAR-15 4AYN 1 SOURCE JRNL REVDAT 2 21-NOV-12 4AYN 1 JRNL REVDAT 1 07-NOV-12 4AYN 0 JRNL AUTH S.JOHNSON,L.TAN,S.VAN DER VEEN,J.CAESAR, JRNL AUTH 2 E.GOICOECHEA DE JORGE,R.J.HARDING,X.BAI,R.M.EXLEY,P.N.WARD, JRNL AUTH 3 N.RUIVO,K.TRIVEDI,E.CUMBER,R.JONES,L.NEWHAM,D.STAUNTON, JRNL AUTH 4 R.UFRET-VINCENTY,R.BORROW,M.C.PICKERING,S.M.LEA,C.M.TANG JRNL TITL DESIGN AND EVALUATION OF MENINGOCOCCAL VACCINES THROUGH JRNL TITL 2 STRUCTURE-BASED MODIFICATION OF HOST AND PATHOGEN MOLECULES. JRNL REF PLOS PATHOG. V. 8 2981 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 23133374 JRNL DOI 10.1371/JOURNAL.PPAT.1002981 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 14737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 741 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2833 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1962 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2687 REMARK 3 BIN R VALUE (WORKING SET) : 0.1943 REMARK 3 BIN FREE R VALUE : 0.2327 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.15 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66160 REMARK 3 B22 (A**2) : -5.82600 REMARK 3 B33 (A**2) : 5.16440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.224 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.168 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.208 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.164 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1970 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2649 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 687 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 53 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 287 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1970 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 241 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2222 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.83 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4AYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2W81 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2KMME, 0.1 M SODIUM ACETATE PH REMARK 280 4.6, 0.2 M AMMONIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.39550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.97550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.39550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.97550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 61 REMARK 465 GLY A 62 REMARK 465 PRO A 63 REMARK 465 ASP A 64 REMARK 465 SER A 65 REMARK 465 ASP A 66 REMARK 465 ARG A 67 REMARK 465 LEU A 68 REMARK 465 GLN A 69 REMARK 465 GLN A 70 REMARK 465 ARG A 71 REMARK 465 ARG A 72 REMARK 465 VAL A 73 REMARK 465 ALA A 74 REMARK 465 ALA A 75 REMARK 465 ASP A 76 REMARK 465 ILE A 77 REMARK 465 GLY A 78 REMARK 465 ALA A 79 REMARK 465 GLY A 80 REMARK 465 LEU A 81 REMARK 465 ALA A 82 REMARK 465 ASP A 83 REMARK 465 ALA A 84 REMARK 465 LEU A 85 REMARK 465 THR A 86 REMARK 465 ALA A 87 REMARK 465 PRO A 88 REMARK 465 LEU A 89 REMARK 465 ASP A 90 REMARK 465 HIS A 91 REMARK 465 LYS A 92 REMARK 465 ASP A 93 REMARK 465 LYS A 94 REMARK 465 SER A 95 REMARK 465 LEU A 96 REMARK 465 GLN A 97 REMARK 465 SER A 98 REMARK 465 LEU A 99 REMARK 465 THR A 100 REMARK 465 LEU A 101 REMARK 465 ASP A 102 REMARK 465 GLN A 103 REMARK 465 SER A 104 REMARK 465 VAL A 105 REMARK 465 ARG A 106 REMARK 465 LYS A 107 REMARK 465 ASN A 108 REMARK 465 GLU A 109 REMARK 465 LYS A 110 REMARK 465 LEU A 111 REMARK 465 LYS A 112 REMARK 465 LEU A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 GLN A 116 REMARK 465 GLY A 117 REMARK 465 ALA A 118 REMARK 465 GLU A 119 REMARK 465 LYS A 120 REMARK 465 THR A 121 REMARK 465 TYR A 122 REMARK 465 GLY A 123 REMARK 465 ASN A 124 REMARK 465 GLY A 125 REMARK 465 ASP A 126 REMARK 465 SER A 127 REMARK 465 LEU A 128 REMARK 465 ASN A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 LYS A 132 REMARK 465 LEU A 133 REMARK 465 LYS A 134 REMARK 465 ASN A 135 REMARK 465 ASP A 136 REMARK 465 LYS A 137 REMARK 465 VAL A 138 REMARK 465 SER A 139 REMARK 465 ARG A 140 REMARK 465 PHE A 141 REMARK 465 ASP A 142 REMARK 465 PHE A 143 REMARK 465 ILE A 144 REMARK 465 ARG A 145 REMARK 465 GLN A 146 REMARK 465 ILE A 147 REMARK 465 GLU A 148 REMARK 465 VAL A 149 REMARK 465 ASP A 150 REMARK 465 GLY A 151 REMARK 465 GLN A 152 REMARK 465 LEU A 153 REMARK 465 ILE A 154 REMARK 465 THR A 155 REMARK 465 LEU A 156 REMARK 465 GLU A 157 REMARK 465 SER A 158 REMARK 465 GLY A 159 REMARK 465 GLU A 160 REMARK 465 PHE A 161 REMARK 465 GLN A 162 REMARK 465 ILE A 163 REMARK 465 TYR A 164 REMARK 465 LYS A 165 REMARK 465 GLN A 166 REMARK 465 ASP A 167 REMARK 465 HIS A 168 REMARK 465 SER A 169 REMARK 465 ALA A 170 REMARK 465 VAL A 171 REMARK 465 VAL A 172 REMARK 465 ALA A 173 REMARK 465 LEU A 174 REMARK 465 GLN A 175 REMARK 465 ILE A 176 REMARK 465 GLU A 177 REMARK 465 LYS A 178 REMARK 465 ILE A 179 REMARK 465 ASN A 180 REMARK 465 ASN A 181 REMARK 465 PRO A 182 REMARK 465 ASP A 183 REMARK 465 LYS A 184 REMARK 465 ILE A 185 REMARK 465 ASP A 186 REMARK 465 SER A 187 REMARK 465 LEU A 188 REMARK 465 ILE A 189 REMARK 465 ASN A 190 REMARK 465 GLN A 191 REMARK 465 ARG A 192 REMARK 465 SER A 193 REMARK 465 PHE A 194 REMARK 465 LEU A 195 REMARK 465 VAL A 196 REMARK 465 SER A 197 REMARK 465 GLY A 198 REMARK 465 LEU A 199 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 MET B 61 REMARK 465 GLY B 62 REMARK 465 PRO B 63 REMARK 465 ASP B 64 REMARK 465 SER B 65 REMARK 465 ASP B 66 REMARK 465 ARG B 67 REMARK 465 LEU B 68 REMARK 465 GLN B 69 REMARK 465 GLN B 70 REMARK 465 ARG B 71 REMARK 465 ARG B 72 REMARK 465 VAL B 73 REMARK 465 ALA B 74 REMARK 465 ALA B 75 REMARK 465 ASP B 76 REMARK 465 ILE B 77 REMARK 465 GLY B 78 REMARK 465 ALA B 79 REMARK 465 GLY B 80 REMARK 465 LEU B 81 REMARK 465 ALA B 82 REMARK 465 ASP B 83 REMARK 465 ALA B 84 REMARK 465 LEU B 85 REMARK 465 THR B 86 REMARK 465 ALA B 87 REMARK 465 PRO B 88 REMARK 465 LEU B 89 REMARK 465 ASP B 90 REMARK 465 HIS B 91 REMARK 465 LYS B 92 REMARK 465 ASP B 93 REMARK 465 LYS B 94 REMARK 465 SER B 95 REMARK 465 LEU B 96 REMARK 465 GLN B 97 REMARK 465 SER B 98 REMARK 465 LEU B 99 REMARK 465 THR B 100 REMARK 465 LEU B 101 REMARK 465 ASP B 102 REMARK 465 GLN B 103 REMARK 465 SER B 104 REMARK 465 VAL B 105 REMARK 465 ARG B 106 REMARK 465 LYS B 107 REMARK 465 ASN B 108 REMARK 465 GLU B 109 REMARK 465 LYS B 110 REMARK 465 LEU B 111 REMARK 465 LYS B 112 REMARK 465 LEU B 113 REMARK 465 ALA B 114 REMARK 465 ALA B 115 REMARK 465 GLN B 116 REMARK 465 GLY B 117 REMARK 465 ALA B 118 REMARK 465 GLU B 119 REMARK 465 LYS B 120 REMARK 465 THR B 121 REMARK 465 TYR B 122 REMARK 465 GLY B 123 REMARK 465 ASN B 124 REMARK 465 GLY B 125 REMARK 465 ASP B 126 REMARK 465 SER B 127 REMARK 465 LEU B 128 REMARK 465 ASN B 129 REMARK 465 THR B 130 REMARK 465 GLY B 131 REMARK 465 LYS B 132 REMARK 465 LEU B 133 REMARK 465 LYS B 134 REMARK 465 ASN B 135 REMARK 465 ASP B 136 REMARK 465 LYS B 137 REMARK 465 VAL B 138 REMARK 465 SER B 139 REMARK 465 ARG B 140 REMARK 465 PHE B 141 REMARK 465 ASP B 142 REMARK 465 PHE B 143 REMARK 465 ILE B 144 REMARK 465 ARG B 145 REMARK 465 GLN B 146 REMARK 465 ILE B 147 REMARK 465 GLU B 148 REMARK 465 VAL B 149 REMARK 465 ASP B 150 REMARK 465 GLY B 151 REMARK 465 GLN B 152 REMARK 465 LEU B 153 REMARK 465 ILE B 154 REMARK 465 THR B 155 REMARK 465 LEU B 156 REMARK 465 GLU B 157 REMARK 465 SER B 158 REMARK 465 GLY B 159 REMARK 465 GLU B 160 REMARK 465 PHE B 161 REMARK 465 GLN B 162 REMARK 465 ILE B 163 REMARK 465 TYR B 164 REMARK 465 LYS B 165 REMARK 465 GLN B 166 REMARK 465 ASP B 167 REMARK 465 HIS B 168 REMARK 465 SER B 169 REMARK 465 ALA B 170 REMARK 465 VAL B 171 REMARK 465 VAL B 172 REMARK 465 ALA B 173 REMARK 465 LEU B 174 REMARK 465 GLN B 175 REMARK 465 ILE B 176 REMARK 465 GLU B 177 REMARK 465 LYS B 178 REMARK 465 ILE B 179 REMARK 465 ASN B 180 REMARK 465 ASN B 181 REMARK 465 PRO B 182 REMARK 465 ASP B 183 REMARK 465 LYS B 184 REMARK 465 ILE B 185 REMARK 465 ASP B 186 REMARK 465 SER B 187 REMARK 465 LEU B 188 REMARK 465 ILE B 189 REMARK 465 ASN B 190 REMARK 465 GLN B 191 REMARK 465 ARG B 192 REMARK 465 SER B 193 REMARK 465 PHE B 194 REMARK 465 LEU B 195 REMARK 465 VAL B 196 REMARK 465 SER B 197 REMARK 465 GLY B 198 REMARK 465 LEU B 199 REMARK 465 GLY B 200 REMARK 465 LEU B 321 REMARK 465 GLU B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 281 CB OG REMARK 470 SER B 281 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 216 O HOH B 2013 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 281 -7.53 70.25 REMARK 500 SER B 281 -6.97 70.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1331 REMARK 999 REMARK 999 SEQUENCE REMARK 999 DISCREPANCIES AT TERMINI ARE FROM VECTOR. THE SEQUENCE HAS REMARK 999 BEEN RENUMBERED TO MATCH THAT OF THE VARIANT 1 SEQUENCE REMARK 999 (PDB ID 2W81) DBREF 4AYN A 73 320 UNP C6KHT4 C6KHT4_NEIME 27 273 DBREF 4AYN B 73 320 UNP C6KHT4 C6KHT4_NEIME 27 273 SEQADV 4AYN MET A 61 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLY A 62 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN PRO A 63 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ASP A 64 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN SER A 65 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ASP A 66 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ARG A 67 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN LEU A 68 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLN A 69 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLN A 70 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ARG A 71 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ARG A 72 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN LEU A 321 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLU A 322 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS A 323 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS A 324 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS A 325 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS A 326 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS A 327 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS A 328 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN SER A 211 UNP C6KHT4 GLY 165 CONFLICT SEQADV 4AYN MET B 61 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLY B 62 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN PRO B 63 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ASP B 64 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN SER B 65 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ASP B 66 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ARG B 67 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN LEU B 68 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLN B 69 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLN B 70 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ARG B 71 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN ARG B 72 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN LEU B 321 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN GLU B 322 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS B 323 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS B 324 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS B 325 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS B 326 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS B 327 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN HIS B 328 UNP C6KHT4 EXPRESSION TAG SEQADV 4AYN SER B 211 UNP C6KHT4 GLY 165 CONFLICT SEQRES 1 A 267 MET GLY PRO ASP SER ASP ARG LEU GLN GLN ARG ARG VAL SEQRES 2 A 267 ALA ALA ASP ILE GLY ALA GLY LEU ALA ASP ALA LEU THR SEQRES 3 A 267 ALA PRO LEU ASP HIS LYS ASP LYS SER LEU GLN SER LEU SEQRES 4 A 267 THR LEU ASP GLN SER VAL ARG LYS ASN GLU LYS LEU LYS SEQRES 5 A 267 LEU ALA ALA GLN GLY ALA GLU LYS THR TYR GLY ASN GLY SEQRES 6 A 267 ASP SER LEU ASN THR GLY LYS LEU LYS ASN ASP LYS VAL SEQRES 7 A 267 SER ARG PHE ASP PHE ILE ARG GLN ILE GLU VAL ASP GLY SEQRES 8 A 267 GLN LEU ILE THR LEU GLU SER GLY GLU PHE GLN ILE TYR SEQRES 9 A 267 LYS GLN ASP HIS SER ALA VAL VAL ALA LEU GLN ILE GLU SEQRES 10 A 267 LYS ILE ASN ASN PRO ASP LYS ILE ASP SER LEU ILE ASN SEQRES 11 A 267 GLN ARG SER PHE LEU VAL SER GLY LEU GLY GLY GLU HIS SEQRES 12 A 267 THR ALA PHE ASN GLN LEU PRO SER GLY LYS ALA GLU TYR SEQRES 13 A 267 HIS GLY LYS ALA PHE SER SER ASP ASP PRO ASN GLY ARG SEQRES 14 A 267 LEU HIS TYR SER ILE ASP PHE THR LYS LYS GLN GLY TYR SEQRES 15 A 267 GLY ARG ILE GLU HIS LEU LYS THR PRO GLU GLN ASN VAL SEQRES 16 A 267 GLU LEU ALA SER ALA GLU LEU LYS ALA ASP GLU LYS SER SEQRES 17 A 267 HIS ALA VAL ILE LEU GLY ASP THR ARG TYR GLY SER GLU SEQRES 18 A 267 GLU LYS GLY THR TYR HIS LEU ALA LEU PHE GLY ASP ARG SEQRES 19 A 267 ALA GLN GLU ILE ALA GLY SER ALA THR VAL LYS ILE ARG SEQRES 20 A 267 GLU LYS VAL HIS GLU ILE GLY ILE ALA GLY LYS GLN LEU SEQRES 21 A 267 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 267 MET GLY PRO ASP SER ASP ARG LEU GLN GLN ARG ARG VAL SEQRES 2 B 267 ALA ALA ASP ILE GLY ALA GLY LEU ALA ASP ALA LEU THR SEQRES 3 B 267 ALA PRO LEU ASP HIS LYS ASP LYS SER LEU GLN SER LEU SEQRES 4 B 267 THR LEU ASP GLN SER VAL ARG LYS ASN GLU LYS LEU LYS SEQRES 5 B 267 LEU ALA ALA GLN GLY ALA GLU LYS THR TYR GLY ASN GLY SEQRES 6 B 267 ASP SER LEU ASN THR GLY LYS LEU LYS ASN ASP LYS VAL SEQRES 7 B 267 SER ARG PHE ASP PHE ILE ARG GLN ILE GLU VAL ASP GLY SEQRES 8 B 267 GLN LEU ILE THR LEU GLU SER GLY GLU PHE GLN ILE TYR SEQRES 9 B 267 LYS GLN ASP HIS SER ALA VAL VAL ALA LEU GLN ILE GLU SEQRES 10 B 267 LYS ILE ASN ASN PRO ASP LYS ILE ASP SER LEU ILE ASN SEQRES 11 B 267 GLN ARG SER PHE LEU VAL SER GLY LEU GLY GLY GLU HIS SEQRES 12 B 267 THR ALA PHE ASN GLN LEU PRO SER GLY LYS ALA GLU TYR SEQRES 13 B 267 HIS GLY LYS ALA PHE SER SER ASP ASP PRO ASN GLY ARG SEQRES 14 B 267 LEU HIS TYR SER ILE ASP PHE THR LYS LYS GLN GLY TYR SEQRES 15 B 267 GLY ARG ILE GLU HIS LEU LYS THR PRO GLU GLN ASN VAL SEQRES 16 B 267 GLU LEU ALA SER ALA GLU LEU LYS ALA ASP GLU LYS SER SEQRES 17 B 267 HIS ALA VAL ILE LEU GLY ASP THR ARG TYR GLY SER GLU SEQRES 18 B 267 GLU LYS GLY THR TYR HIS LEU ALA LEU PHE GLY ASP ARG SEQRES 19 B 267 ALA GLN GLU ILE ALA GLY SER ALA THR VAL LYS ILE ARG SEQRES 20 B 267 GLU LYS VAL HIS GLU ILE GLY ILE ALA GLY LYS GLN LEU SEQRES 21 B 267 GLU HIS HIS HIS HIS HIS HIS HET SO4 A1326 5 HET SO4 A1327 5 HET SO4 A1328 5 HET SO4 A1329 5 HET SO4 A1330 5 HET SO4 A1331 5 HET SO4 B1321 5 HET SO4 B1322 5 HET SO4 B1323 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 HOH *120(H2 O) HELIX 1 1 PHE A 206 LEU A 209 5 4 HELIX 2 2 THR A 251 ASN A 255 5 5 HELIX 3 3 PHE B 206 LEU B 209 5 4 HELIX 4 4 THR B 251 ASN B 255 5 5 SHEET 1 AA 9 LYS A 214 SER A 223 0 SHEET 2 AA 9 LYS A 310 HIS A 324 -1 O GLY A 315 N PHE A 222 SHEET 3 AA 9 GLU A 298 ILE A 307 -1 O ILE A 299 N GLY A 318 SHEET 4 AA 9 GLU A 282 PHE A 292 -1 O LYS A 284 N LYS A 306 SHEET 5 AA 9 ALA A 271 TYR A 279 -1 O ALA A 271 N LEU A 291 SHEET 6 AA 9 GLU A 257 ALA A 265 -1 O GLU A 257 N ARG A 278 SHEET 7 AA 9 GLN A 241 GLU A 247 -1 O GLY A 242 N ALA A 261 SHEET 8 AA 9 GLY A 229 ASP A 236 -1 O ARG A 230 N GLU A 247 SHEET 9 AA 9 LYS A 214 SER A 223 -1 O ALA A 215 N ILE A 235 SHEET 1 BA 9 LYS B 214 SER B 223 0 SHEET 2 BA 9 ASP B 226 ASP B 236 -1 O ASP B 226 N SER B 223 SHEET 3 BA 9 GLN B 241 GLU B 247 -1 O GLN B 241 N ASP B 236 SHEET 4 BA 9 GLU B 257 ALA B 265 -1 O LEU B 258 N GLY B 244 SHEET 5 BA 9 ALA B 271 TYR B 279 -1 O VAL B 272 N LYS B 264 SHEET 6 BA 9 GLU B 282 PHE B 292 -1 O GLU B 282 N TYR B 279 SHEET 7 BA 9 GLU B 298 ILE B 307 -1 O GLU B 298 N PHE B 292 SHEET 8 BA 9 LYS B 310 LYS B 319 -1 O LYS B 310 N ILE B 307 SHEET 9 BA 9 LYS B 214 SER B 223 -1 O HIS B 218 N LYS B 319 SITE 1 AC1 3 HIS B 218 ARG B 230 HIS B 232 SITE 1 AC2 9 GLU A 216 HIS A 232 ARG A 245 HOH A2013 SITE 2 AC2 9 HOH A2014 HOH A2062 ARG B 245 GLY B 280 SITE 3 AC2 9 HOH B2030 SITE 1 AC3 4 GLU A 202 HIS A 203 HOH A2063 LYS B 306 SITE 1 AC4 9 LEU A 274 THR A 286 HIS A 288 HIS B 203 SITE 2 AC4 9 ASP B 266 VAL B 272 HIS B 288 ALA B 290 SITE 3 AC4 9 HOH B2053 SITE 1 AC5 7 SER A 223 SER A 224 ASP A 225 GLN A 254 SITE 2 AC5 7 HIS A 312 HOH A2016 HOH A2064 SITE 1 AC6 4 SER A 211 GLY A 213 THR A 238 HIS A 325 SITE 1 AC7 2 GLU B 202 HIS B 203 SITE 1 AC8 5 LYS A 214 HIS A 324 ARG B 278 GLU B 282 SITE 2 AC8 5 GLU B 283 SITE 1 AC9 6 HIS A 218 ARG A 230 HIS A 232 PRO B 210 SITE 2 AC9 6 SER B 211 ARG B 295 CRYST1 74.791 75.951 40.896 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024452 0.00000 MTRIX1 1 0.313550 -0.948550 -0.044010 51.22273 1 MTRIX2 1 -0.949570 -0.313350 -0.011460 70.93513 1 MTRIX3 1 -0.002920 0.045380 -0.998970 -5.31968 1