HEADER LYASE 25-JUN-12 4AZD TITLE T57V MUTANT OF ASPARTATE DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE 1-DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-ASPARTATE-ALPHA-DECARBOXYLASE, ASPARTATE ALPHA- COMPND 5 DECARBOXYLASE, ASPARTATE 1-DECARBOXYLASE BETA CHAIN, ASPARTATE 1- COMPND 6 DECARBOXYLASE ALPHA CHAIN; COMPND 7 EC: 4.1.1.11; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PDKS1; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS LYASE, AMINO ACID SUBSTITUTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.WEBB,B.A.YORKE,T.KERSHAW,S.LOVELOCK,C.M.C.LOBLEY,M.L.KILKENNY, AUTHOR 2 A.G.SMITH,T.L.BLUNDELL,A.R.PEARSON,C.ABELL REVDAT 5 20-DEC-23 4AZD 1 REMARK REVDAT 4 08-MAY-19 4AZD 1 REMARK REVDAT 3 16-APR-14 4AZD 1 JRNL REVDAT 2 09-APR-14 4AZD 1 JRNL REVDAT 1 25-JUL-12 4AZD 0 JRNL AUTH M.E.WEBB,B.A.YORKE,T.KERSHAW,S.LOVELOCK,C.M.C.LOBLEY, JRNL AUTH 2 M.L.KILKENNY,A.G.SMITH,T.L.BLUNDELL,A.R.PEARSON,C.ABELL JRNL TITL THREONINE 57 IS REQUIRED FOR THE POST-TRANSLATIONAL JRNL TITL 2 ACTIVATION OF ESCHERICHIA COLI ASPARTATE ALPHA-DECARBOXYLASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1166 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24699660 JRNL DOI 10.1107/S1399004713034275 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 37850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1937 ; 0.028 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2622 ; 2.272 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 6.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;31.056 ;23.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;14.544 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.275 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.216 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1490 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1209 ; 1.503 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1935 ; 2.398 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 728 ; 3.503 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 682 ; 4.872 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0562 -25.3985 -6.3439 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0065 REMARK 3 T33: 0.0066 T12: 0.0008 REMARK 3 T13: -0.0068 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3048 L22: 0.2793 REMARK 3 L33: 0.5126 L12: -0.1067 REMARK 3 L13: 0.1994 L23: -0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.0090 S13: 0.0166 REMARK 3 S21: 0.0198 S22: 0.0115 S23: -0.0133 REMARK 3 S31: -0.0253 S32: -0.0122 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3863 -23.5628 -28.3279 REMARK 3 T TENSOR REMARK 3 T11: 0.0099 T22: 0.0145 REMARK 3 T33: 0.0057 T12: -0.0018 REMARK 3 T13: 0.0024 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.5700 L22: 0.2787 REMARK 3 L33: 0.1317 L12: -0.0064 REMARK 3 L13: 0.2060 L23: -0.0103 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.0305 S13: 0.0255 REMARK 3 S21: -0.0345 S22: -0.0152 S23: -0.0170 REMARK 3 S31: -0.0139 S32: 0.0224 S33: 0.0118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290053044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 26.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1PPY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, 1.5 M (NH4)2SO4 REMARK 280 PH 4, 292 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.57333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 145.14667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.86000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 181.43333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.28667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.57333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 145.14667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 181.43333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.86000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.28667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -34.96000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -60.55250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.28667 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 57 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 57 TO VAL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 ALA A 118 REMARK 465 LYS A 119 REMARK 465 ALA A 120 REMARK 465 ILE A 121 REMARK 465 PRO A 122 REMARK 465 VAL A 123 REMARK 465 GLN A 124 REMARK 465 VAL A 125 REMARK 465 ALA A 126 REMARK 465 MET B -16 REMARK 465 ARG B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ALA B 118 REMARK 465 LYS B 119 REMARK 465 ALA B 120 REMARK 465 ILE B 121 REMARK 465 PRO B 122 REMARK 465 VAL B 123 REMARK 465 GLN B 124 REMARK 465 VAL B 125 REMARK 465 ALA B 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLU B 109 CD OE1 OE2 REMARK 470 ASP B 111 CG OD1 OD2 REMARK 470 LYS B 115 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2019 O HOH B 2003 6555 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 57 -156.45 -154.80 REMARK 500 ARG B 12 56.22 79.41 REMARK 500 VAL B 57 -154.84 -160.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 1118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1120 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AW8 RELATED DB: PDB REMARK 900 PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE REMARK 900 RELATED ID: 1PPY RELATED DB: PDB REMARK 900 NATIVE PRECURSOR OF PYRUVOYL DEPENDENT ASPARTATEDECARBOXYLASE REMARK 900 RELATED ID: 1PQE RELATED DB: PDB REMARK 900 S25A MUTANT OF PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE REMARK 900 RELATED ID: 1PQF RELATED DB: PDB REMARK 900 GLYCINE 24 TO SERINE MUTATION OF ASPARTATE DECARBOXYLASE REMARK 900 RELATED ID: 1PQH RELATED DB: PDB REMARK 900 SERINE 25 TO THREONINE MUTATION OF ASPARTATE DECARBOXYLASE REMARK 900 RELATED ID: 1PT0 RELATED DB: PDB REMARK 900 UNPROCESSED PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE WITHAN REMARK 900 ALANINE INSERTION AT POSITION 26 REMARK 900 RELATED ID: 1PT1 RELATED DB: PDB REMARK 900 UNPROCESSED PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE REMARK 900 WITHHISTIDINE 11 MUTATED TO ALANINE REMARK 900 RELATED ID: 1PYQ RELATED DB: PDB REMARK 900 UNPROCESSED ASPARTATE DECARBOXYLASE MUTANT REMARK 900 RELATED ID: 1PYU RELATED DB: PDB REMARK 900 PROCESSED ASPARTATE DECARBOXYLASE MUTANT REMARK 900 RELATED ID: 4AOK RELATED DB: PDB REMARK 900 CONFORMATIONAL DYNAMICS OF ASPARTATE ALPHA-DECARBOXYLASE ACTIVE REMARK 900 SITE REVEALED BY PROTEIN-LIGAND COMPLEXES: 1- METHYL-L-ASPARTATE REMARK 900 COMPLEX REMARK 900 RELATED ID: 4AON RELATED DB: PDB REMARK 900 CONFORMATIONAL DYNAMICS OF ASPARTATE ALPHA-DECARBOXYLASE ACTIVE REMARK 900 SITE REVEALED BY PROTEIN-LIGAND COMPLEXES: 1- METHYL-L-ASPARTATE REMARK 900 COMPLEX DBREF 4AZD A 1 126 UNP P0A790 PAND_ECOLI 1 126 DBREF 4AZD B 1 126 UNP P0A790 PAND_ECOLI 1 126 SEQADV 4AZD MET A -16 UNP P0A790 EXPRESSION TAG SEQADV 4AZD ARG A -15 UNP P0A790 EXPRESSION TAG SEQADV 4AZD GLY A -14 UNP P0A790 EXPRESSION TAG SEQADV 4AZD SER A -13 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS A -12 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS A -11 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS A -10 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS A -9 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS A -8 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS A -7 UNP P0A790 EXPRESSION TAG SEQADV 4AZD GLY A -6 UNP P0A790 EXPRESSION TAG SEQADV 4AZD LEU A -5 UNP P0A790 EXPRESSION TAG SEQADV 4AZD VAL A -4 UNP P0A790 EXPRESSION TAG SEQADV 4AZD PRO A -3 UNP P0A790 EXPRESSION TAG SEQADV 4AZD ARG A -2 UNP P0A790 EXPRESSION TAG SEQADV 4AZD GLY A -1 UNP P0A790 EXPRESSION TAG SEQADV 4AZD SER A 0 UNP P0A790 EXPRESSION TAG SEQADV 4AZD VAL A 57 UNP P0A790 THR 57 ENGINEERED MUTATION SEQADV 4AZD MET B -16 UNP P0A790 EXPRESSION TAG SEQADV 4AZD ARG B -15 UNP P0A790 EXPRESSION TAG SEQADV 4AZD GLY B -14 UNP P0A790 EXPRESSION TAG SEQADV 4AZD SER B -13 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS B -12 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS B -11 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS B -10 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS B -9 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS B -8 UNP P0A790 EXPRESSION TAG SEQADV 4AZD HIS B -7 UNP P0A790 EXPRESSION TAG SEQADV 4AZD GLY B -6 UNP P0A790 EXPRESSION TAG SEQADV 4AZD LEU B -5 UNP P0A790 EXPRESSION TAG SEQADV 4AZD VAL B -4 UNP P0A790 EXPRESSION TAG SEQADV 4AZD PRO B -3 UNP P0A790 EXPRESSION TAG SEQADV 4AZD ARG B -2 UNP P0A790 EXPRESSION TAG SEQADV 4AZD GLY B -1 UNP P0A790 EXPRESSION TAG SEQADV 4AZD SER B 0 UNP P0A790 EXPRESSION TAG SEQADV 4AZD VAL B 57 UNP P0A790 THR 57 ENGINEERED MUTATION SEQRES 1 A 143 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 143 PRO ARG GLY SER MET ILE ARG THR MET LEU GLN GLY LYS SEQRES 3 A 143 LEU HIS ARG VAL LYS VAL THR HIS ALA ASP LEU HIS TYR SEQRES 4 A 143 GLU GLY SER CYS ALA ILE ASP GLN ASP PHE LEU ASP ALA SEQRES 5 A 143 ALA GLY ILE LEU GLU ASN GLU ALA ILE ASP ILE TRP ASN SEQRES 6 A 143 VAL THR ASN GLY LYS ARG PHE SER VAL TYR ALA ILE ALA SEQRES 7 A 143 ALA GLU ARG GLY SER ARG ILE ILE SER VAL ASN GLY ALA SEQRES 8 A 143 ALA ALA HIS CYS ALA SER VAL GLY ASP ILE VAL ILE ILE SEQRES 9 A 143 ALA SER PHE VAL THR MET PRO ASP GLU GLU ALA ARG THR SEQRES 10 A 143 TRP ARG PRO ASN VAL ALA TYR PHE GLU GLY ASP ASN GLU SEQRES 11 A 143 MET LYS ARG THR ALA LYS ALA ILE PRO VAL GLN VAL ALA SEQRES 1 B 143 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 B 143 PRO ARG GLY SER MET ILE ARG THR MET LEU GLN GLY LYS SEQRES 3 B 143 LEU HIS ARG VAL LYS VAL THR HIS ALA ASP LEU HIS TYR SEQRES 4 B 143 GLU GLY SER CYS ALA ILE ASP GLN ASP PHE LEU ASP ALA SEQRES 5 B 143 ALA GLY ILE LEU GLU ASN GLU ALA ILE ASP ILE TRP ASN SEQRES 6 B 143 VAL THR ASN GLY LYS ARG PHE SER VAL TYR ALA ILE ALA SEQRES 7 B 143 ALA GLU ARG GLY SER ARG ILE ILE SER VAL ASN GLY ALA SEQRES 8 B 143 ALA ALA HIS CYS ALA SER VAL GLY ASP ILE VAL ILE ILE SEQRES 9 B 143 ALA SER PHE VAL THR MET PRO ASP GLU GLU ALA ARG THR SEQRES 10 B 143 TRP ARG PRO ASN VAL ALA TYR PHE GLU GLY ASP ASN GLU SEQRES 11 B 143 MET LYS ARG THR ALA LYS ALA ILE PRO VAL GLN VAL ALA HET MLI A1118 7 HET MLI A1119 7 HET MLI A1120 7 HET MLI B1118 7 HETNAM MLI MALONATE ION FORMUL 3 MLI 4(C3 H2 O4 2-) FORMUL 7 HOH *138(H2 O) HELIX 1 1 GLN A 30 GLY A 37 1 8 HELIX 2 2 ALA A 74 CYS A 78 5 5 HELIX 3 3 ASP A 95 THR A 100 1 6 HELIX 4 4 GLN B 30 GLY B 37 1 8 HELIX 5 5 ASN B 72 CYS B 78 5 7 HELIX 6 6 ASP B 95 ARG B 99 1 5 SHEET 1 AA 9 HIS A 17 ASP A 19 0 SHEET 2 AA 9 ILE A 69 ASN A 72 1 O VAL A 71 N ASP A 19 SHEET 3 AA 9 CYS A 26 ASP A 29 -1 O ALA A 27 N SER A 70 SHEET 4 AA 9 ARG A 54 ALA A 62 1 O TYR A 58 N CYS A 26 SHEET 5 AA 9 ALA A 43 ASN A 48 -1 O ILE A 44 N VAL A 57 SHEET 6 AA 9 ILE A 84 PRO A 94 -1 O ILE A 86 N TRP A 47 SHEET 7 AA 9 ILE A 2 LYS A 14 -1 O ARG A 3 N MET A 93 SHEET 8 AA 9 ASN A 104 GLU A 109 1 O ASN A 104 N LYS A 9 SHEET 9 AA 9 GLU A 113 LYS A 115 -1 O GLU A 113 N GLU A 109 SHEET 1 BA 8 ILE B 69 SER B 70 0 SHEET 2 BA 8 CYS B 26 ASP B 29 -1 O ALA B 27 N SER B 70 SHEET 3 BA 8 ARG B 54 ALA B 62 1 O TYR B 58 N CYS B 26 SHEET 4 BA 8 ALA B 43 ASN B 48 -1 O ILE B 44 N VAL B 57 SHEET 5 BA 8 ILE B 84 PRO B 94 -1 O ILE B 86 N TRP B 47 SHEET 6 BA 8 ILE B 2 LYS B 14 -1 O ARG B 3 N MET B 93 SHEET 7 BA 8 ASN B 104 GLU B 109 1 O ASN B 104 N LYS B 9 SHEET 8 BA 8 GLU B 113 MET B 114 -1 O GLU B 113 N GLU B 109 CISPEP 1 VAL A -4 PRO A -3 0 0.05 SITE 1 AC1 12 LYS A 9 HIS A 11 TRP A 47 ARG A 54 SITE 2 AC1 12 ILE A 86 VAL B 57 TYR B 58 ASN B 72 SITE 3 AC1 12 GLY B 73 ALA B 74 ALA B 75 HOH B2014 SITE 1 AC2 12 VAL A 57 TYR A 58 ASN A 72 GLY A 73 SITE 2 AC2 12 ALA A 74 ALA A 75 HOH A2027 LYS B 9 SITE 3 AC2 12 HIS B 11 TRP B 47 ARG B 54 ILE B 86 SITE 1 AC3 7 ARG A 12 VAL A 49 THR A 50 ILE A 84 SITE 2 AC3 7 HOH A2039 HIS B 21 ARG B 102 SITE 1 AC4 6 SER A 25 ASN A 41 TYR A 58 ILE A 60 SITE 2 AC4 6 HOH A2026 PRO B 103 CRYST1 69.920 69.920 217.720 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014302 0.008257 0.000000 0.00000 SCALE2 0.000000 0.016515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004593 0.00000