HEADER TRANSFERASE 25-JUN-12 4AZF TITLE HUMAN DYRK2 IN COMPLEX WITH LEUCETTINE L41 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYRK2 DUAL-SPECIFICITY TYROSINE-PHOSPHORYLATION REGULATED COMPND 3 KINASE 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DYRK2; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ELKINS,M.SOUNDARARAJAN,J.R.C.MUNIZ,T.TAHTOUH,G.BURGY,E.DURIEU, AUTHOR 2 O.LOZACH,C.COCHET,R.S.SCHMID,D.C.LO,F.DELHOMMEL,F.CARREAUX, AUTHOR 3 J.P.BAZUREAU,L.MEIJER,A.EDWARDS,C.BOUNTRA,S.KNAPP REVDAT 5 09-OCT-24 4AZF 1 REMARK REVDAT 4 20-DEC-23 4AZF 1 REMARK LINK REVDAT 3 21-NOV-12 4AZF 1 JRNL REVDAT 2 03-OCT-12 4AZF 1 JRNL REMARK REVDAT 1 05-SEP-12 4AZF 0 JRNL AUTH T.TAHTOUH,J.M.ELKINS,P.FILIPPAKOPOULOS,M.SOUNDARARAJAN, JRNL AUTH 2 G.BURGY,E.DURIEU,C.COCHET,R.S.SCHMID,D.C.LO,F.DELHOMMEL, JRNL AUTH 3 A.OBERHOLZER,P.LAURENCE,F.CARREAUX,J.P.BAZUREAU,S.KNAPP, JRNL AUTH 4 L.MEIJER JRNL TITL SELECTIVITY, CO-CRYSTAL STRUCTURES AND NEUROPROTECTIVE JRNL TITL 2 PROPERTIES OF LEUCETTINES, A FAMILY OF PROTEIN KINASE JRNL TITL 3 INHIBITORS DERIVED FROM THE MARINE SPONGE ALKALOID JRNL TITL 4 LEUCETTAMINE B. JRNL REF J.MED.CHEM. V. 55 9312 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22998443 JRNL DOI 10.1021/JM301034U REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1081 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34000 REMARK 3 B22 (A**2) : 1.34000 REMARK 3 B33 (A**2) : -2.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.489 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.293 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3340 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2271 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4521 ; 1.378 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5499 ; 0.859 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 5.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;34.858 ;23.677 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;15.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.054 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3716 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 691 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6470 26.5020 37.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.3079 REMARK 3 T33: 0.1385 T12: 0.0370 REMARK 3 T13: -0.0584 T23: 0.0812 REMARK 3 L TENSOR REMARK 3 L11: 2.6748 L22: 2.3154 REMARK 3 L33: 7.8647 L12: -0.3258 REMARK 3 L13: 0.9335 L23: 0.0739 REMARK 3 S TENSOR REMARK 3 S11: -0.1146 S12: -0.5130 S13: -0.3779 REMARK 3 S21: 0.2509 S22: -0.0939 S23: 0.0599 REMARK 3 S31: 0.1313 S32: 0.0227 S33: 0.2085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2020 27.5930 21.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.0158 REMARK 3 T33: 0.0622 T12: 0.0201 REMARK 3 T13: -0.0974 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 8.2244 L22: 0.6934 REMARK 3 L33: 1.9089 L12: 0.3175 REMARK 3 L13: -0.6272 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: 0.2894 S13: -0.1969 REMARK 3 S21: -0.2992 S22: -0.0259 S23: 0.1538 REMARK 3 S31: -0.0457 S32: 0.0397 S33: 0.1066 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 467 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9770 28.7010 11.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.1262 REMARK 3 T33: 0.0661 T12: 0.0400 REMARK 3 T13: -0.0080 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.4238 L22: 1.5497 REMARK 3 L33: 3.6536 L12: -0.2457 REMARK 3 L13: 0.8683 L23: -0.2906 REMARK 3 S TENSOR REMARK 3 S11: -0.1379 S12: -0.1020 S13: 0.2362 REMARK 3 S21: 0.0531 S22: -0.0896 S23: 0.1982 REMARK 3 S31: -0.1315 S32: -0.4850 S33: 0.2275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290053047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 59.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 3K2L REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA/KPO4, 20% PEG 3350, 10% REMARK 280 ETHYLENE GLYCOL, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.73050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.73050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.26700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.73050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.73050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.26700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.73050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.73050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.26700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.73050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.73050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.26700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2007 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 51 REMARK 465 HIS A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 GLY A 400 REMARK 465 SER A 401 REMARK 465 ARG A 464 REMARK 465 ARG A 465 REMARK 465 LEU A 466 REMARK 465 PRO A 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 73 CG SD CE REMARK 470 LYS A 75 CE NZ REMARK 470 LYS A 77 CE NZ REMARK 470 LYS A 88 CD CE NZ REMARK 470 LYS A 93 NZ REMARK 470 LYS A 116 CD CE NZ REMARK 470 GLN A 134 CG CD OE1 NE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS A 241 NZ REMARK 470 LYS A 268 NZ REMARK 470 GLN A 286 CD OE1 NE2 REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 371 NZ REMARK 470 LYS A 377 CE NZ REMARK 470 LYS A 380 NZ REMARK 470 LYS A 386 CE NZ REMARK 470 SER A 398 OG REMARK 470 ASP A 431 CG OD1 OD2 REMARK 470 ARG A 463 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 122 105.79 -53.39 REMARK 500 TYR A 147 27.17 48.85 REMARK 500 LEU A 152 -53.87 -124.13 REMARK 500 LEU A 231 -167.74 -118.27 REMARK 500 SER A 232 -149.38 -105.49 REMARK 500 PHE A 244 26.99 49.78 REMARK 500 CYS A 274 -7.32 80.40 REMARK 500 ASP A 275 48.97 -146.66 REMARK 500 ASP A 295 77.52 61.33 REMARK 500 PHE A 296 30.44 -93.54 REMARK 500 PTR A 309 103.77 -57.06 REMARK 500 GLN A 311 158.03 70.03 REMARK 500 ALA A 375 42.68 -92.95 REMARK 500 LYS A 428 53.26 37.72 REMARK 500 ASP A 431 43.44 -105.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3RA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1465 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AZE RELATED DB: PDB REMARK 900 HUMAN DYRK1A IN COMPLEX WITH LEUCETTINE L41 DBREF 4AZF A 73 467 UNP Q92630 DYRK2_HUMAN 73 467 SEQADV 4AZF MET A 51 UNP Q92630 EXPRESSION TAG SEQADV 4AZF HIS A 52 UNP Q92630 EXPRESSION TAG SEQADV 4AZF HIS A 53 UNP Q92630 EXPRESSION TAG SEQADV 4AZF HIS A 54 UNP Q92630 EXPRESSION TAG SEQADV 4AZF HIS A 55 UNP Q92630 EXPRESSION TAG SEQADV 4AZF HIS A 56 UNP Q92630 EXPRESSION TAG SEQADV 4AZF HIS A 57 UNP Q92630 EXPRESSION TAG SEQADV 4AZF SER A 58 UNP Q92630 EXPRESSION TAG SEQADV 4AZF SEP A 59 UNP Q92630 EXPRESSION TAG SEQADV 4AZF GLY A 60 UNP Q92630 EXPRESSION TAG SEQADV 4AZF VAL A 61 UNP Q92630 EXPRESSION TAG SEQADV 4AZF ASP A 62 UNP Q92630 EXPRESSION TAG SEQADV 4AZF LEU A 63 UNP Q92630 EXPRESSION TAG SEQADV 4AZF GLY A 64 UNP Q92630 EXPRESSION TAG SEQADV 4AZF THR A 65 UNP Q92630 EXPRESSION TAG SEQADV 4AZF GLU A 66 UNP Q92630 EXPRESSION TAG SEQADV 4AZF ASN A 67 UNP Q92630 EXPRESSION TAG SEQADV 4AZF LEU A 68 UNP Q92630 EXPRESSION TAG SEQADV 4AZF TYR A 69 UNP Q92630 EXPRESSION TAG SEQADV 4AZF PHE A 70 UNP Q92630 EXPRESSION TAG SEQADV 4AZF GLN A 71 UNP Q92630 EXPRESSION TAG SEQADV 4AZF SER A 72 UNP Q92630 EXPRESSION TAG SEQRES 1 A 417 MET HIS HIS HIS HIS HIS HIS SER SEP GLY VAL ASP LEU SEQRES 2 A 417 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS VAL SEQRES 3 A 417 LYS ALA THR PRO MET THR PRO GLU GLN ALA MET LYS GLN SEQRES 4 A 417 TYR MET GLN LYS LEU THR ALA PHE GLU HIS HIS GLU ILE SEQRES 5 A 417 PHE SER TYR PRO GLU ILE TYR PHE LEU GLY LEU ASN ALA SEQRES 6 A 417 LYS LYS ARG GLN GLY MET THR GLY GLY PRO ASN ASN GLY SEQRES 7 A 417 GLY TYR ASP ASP ASP GLN GLY SER TYR VAL GLN VAL PRO SEQRES 8 A 417 HIS ASP HIS VAL ALA TYR ARG TYR GLU VAL LEU LYS VAL SEQRES 9 A 417 ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 10 A 417 ASP HIS LYS VAL HIS GLN HIS VAL ALA LEU LYS MET VAL SEQRES 11 A 417 ARG ASN GLU LYS ARG PHE HIS ARG GLN ALA ALA GLU GLU SEQRES 12 A 417 ILE ARG ILE LEU GLU HIS LEU ARG LYS GLN ASP LYS ASP SEQRES 13 A 417 ASN THR MET ASN VAL ILE HIS MET LEU GLU ASN PHE THR SEQRES 14 A 417 PHE ARG ASN HIS ILE CYS MET THR PHE GLU LEU LEU SER SEQRES 15 A 417 MET ASN LEU TYR GLU LEU ILE LYS LYS ASN LYS PHE GLN SEQRES 16 A 417 GLY PHE SER LEU PRO LEU VAL ARG LYS PHE ALA HIS SER SEQRES 17 A 417 ILE LEU GLN CYS LEU ASP ALA LEU HIS LYS ASN ARG ILE SEQRES 18 A 417 ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU LEU LYS SEQRES 19 A 417 GLN GLN GLY ARG SER GLY ILE LYS VAL ILE ASP PHE GLY SEQRES 20 A 417 SER SER CYS TYR GLU HIS GLN ARG VAL TYR THR PTR ILE SEQRES 21 A 417 GLN SER ARG PHE TYR ARG ALA PRO GLU VAL ILE LEU GLY SEQRES 22 A 417 ALA ARG TYR GLY MET PRO ILE ASP MET TRP SER LEU GLY SEQRES 23 A 417 CYS ILE LEU ALA GLU LEU LEU THR GLY TYR PRO LEU LEU SEQRES 24 A 417 PRO GLY GLU ASP GLU GLY ASP GLN LEU ALA CYS MET ILE SEQRES 25 A 417 GLU LEU LEU GLY MET PRO SER GLN LYS LEU LEU ASP ALA SEQRES 26 A 417 SER LYS ARG ALA LYS ASN PHE VAL SER SEP LYS GLY TYR SEQRES 27 A 417 PRO ARG TYR CYS THR VAL THR THR LEU SER ASP GLY SER SEQRES 28 A 417 VAL VAL LEU ASN GLY GLY ARG SER ARG ARG GLY LYS LEU SEQRES 29 A 417 ARG GLY PRO PRO GLU SER ARG GLU TRP GLY ASN ALA LEU SEQRES 30 A 417 LYS GLY CYS ASP ASP PRO LEU PHE LEU ASP PHE LEU LYS SEQRES 31 A 417 GLN CYS LEU GLU TRP ASP PRO ALA VAL ARG MET THR PRO SEQRES 32 A 417 GLY GLN ALA LEU ARG HIS PRO TRP LEU ARG ARG ARG LEU SEQRES 33 A 417 PRO MODRES 4AZF SEP A 59 SER PHOSPHOSERINE MODRES 4AZF PTR A 309 TYR O-PHOSPHOTYROSINE MODRES 4AZF SEP A 385 SER PHOSPHOSERINE HET SEP A 59 10 HET PTR A 309 16 HET SEP A 385 10 HET 3RA A 600 23 HET EDO A1464 4 HET PO4 A1465 5 HETNAM SEP PHOSPHOSERINE HETNAM PTR O-PHOSPHOTYROSINE HETNAM 3RA 5-(1,3-BENZODIOXOL-5-YLMETHYL)-2-(PHENYLAMINO)-4H- HETNAM 2 3RA IMIDAZOL-4-ONE HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN SEP PHOSPHONOSERINE HETSYN PTR PHOSPHONOTYROSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 3RA C17 H13 N3 O3 FORMUL 3 EDO C2 H6 O2 FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *57(H2 O) HELIX 1 1 ASP A 62 GLU A 66 5 5 HELIX 2 2 THR A 82 MET A 91 1 10 HELIX 3 3 GLN A 92 LEU A 94 5 3 HELIX 4 4 THR A 95 ILE A 102 1 8 HELIX 5 5 PHE A 103 TYR A 105 5 3 HELIX 6 6 GLY A 124 GLY A 129 1 6 HELIX 7 7 GLU A 183 LYS A 202 1 20 HELIX 8 8 ASN A 234 ASN A 242 1 9 HELIX 9 9 SER A 248 ASN A 269 1 22 HELIX 10 10 LYS A 277 GLU A 279 5 3 HELIX 11 11 SER A 312 ARG A 316 5 5 HELIX 12 12 ALA A 317 GLY A 323 1 7 HELIX 13 13 MET A 328 GLY A 345 1 18 HELIX 14 14 ASP A 353 GLY A 366 1 14 HELIX 15 15 SER A 369 ALA A 375 1 7 HELIX 16 16 ARG A 378 VAL A 383 1 6 HELIX 17 17 GLU A 422 LEU A 427 1 6 HELIX 18 18 ASP A 432 LEU A 443 1 12 HELIX 19 19 THR A 452 ARG A 458 1 7 SHEET 1 AA 2 ASN A 67 TYR A 69 0 SHEET 2 AA 2 LYS A 77 THR A 79 -1 O LYS A 77 N TYR A 69 SHEET 1 AB 6 HIS A 144 VAL A 145 0 SHEET 2 AB 6 TYR A 149 LYS A 157 -1 O TYR A 149 N VAL A 145 SHEET 3 AB 6 GLY A 161 ASP A 168 -1 O VAL A 163 N ILE A 155 SHEET 4 AB 6 GLN A 173 VAL A 180 -1 O GLN A 173 N ASP A 168 SHEET 5 AB 6 HIS A 223 GLU A 229 -1 O ILE A 224 N VAL A 180 SHEET 6 AB 6 MET A 214 PHE A 220 -1 N LEU A 215 O THR A 227 SHEET 1 AC 2 ILE A 271 ILE A 272 0 SHEET 2 AC 2 CYS A 300 TYR A 301 -1 O CYS A 300 N ILE A 272 SHEET 1 AD 2 ILE A 281 LEU A 283 0 SHEET 2 AD 2 ILE A 291 VAL A 293 -1 O LYS A 292 N LEU A 282 SHEET 1 AE 2 VAL A 394 THR A 395 0 SHEET 2 AE 2 VAL A 403 LEU A 404 -1 O VAL A 403 N THR A 395 SHEET 1 AF 2 GLY A 407 ARG A 408 0 SHEET 2 AF 2 LEU A 414 ARG A 415 -1 O ARG A 415 N GLY A 407 LINK C SER A 58 N SEP A 59 1555 1555 1.34 LINK C SEP A 59 N GLY A 60 1555 1555 1.33 LINK C THR A 308 N PTR A 309 1555 1555 1.33 LINK C PTR A 309 N ILE A 310 1555 1555 1.33 LINK C SER A 384 N SEP A 385 1555 1555 1.32 LINK C SEP A 385 N LYS A 386 1555 1555 1.33 CISPEP 1 GLY A 123 GLY A 124 0 5.07 CISPEP 2 SER A 398 ASP A 399 0 -6.83 SITE 1 AC1 14 ILE A 155 GLY A 156 PHE A 160 VAL A 163 SITE 2 AC1 14 ALA A 176 LYS A 178 GLU A 229 LEU A 230 SITE 3 AC1 14 LEU A 231 LEU A 282 ILE A 294 ASP A 295 SITE 4 AC1 14 HOH A2028 HOH A2031 SITE 1 AC2 1 ARG A 411 SITE 1 AC3 3 HIS A 56 HIS A 57 HIS A 174 CRYST1 83.461 83.461 148.534 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011982 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006732 0.00000