HEADER TRANSPORT PROTEIN 02-JUL-12 4B0E TITLE CRYSTAL STRUCTURE OF THE CAF1A USHER PROTEIN N-TERMINAL DOMAIN FROM TITLE 2 YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: F1 CAPSULE-ANCHORING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 23-158; COMPND 5 SYNONYM: CAF1A USHER PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCAF1AN KEYWDS TRANSPORT PROTEIN, CHAPERONE-USHER PATHWAY, PILI ASSEMBLY EXPDTA X-RAY DIFFRACTION AUTHOR A.DUBNOVITSKY,X.D.YU,A.F.PUDNEY,S.MACINTYRE,S.D.KNIGHT,A.V.ZAVIALOV REVDAT 4 08-MAY-19 4B0E 1 REMARK REVDAT 3 04-SEP-13 4B0E 1 HETATM REVDAT 2 21-NOV-12 4B0E 1 JRNL REVDAT 1 26-SEP-12 4B0E 0 JRNL AUTH X.DI YU,A.DUBNOVITSKY,A.F.PUDNEY,S.MACINTYRE,S.D.KNIGHT, JRNL AUTH 2 A.V.ZAVIALOV JRNL TITL ALLOSTERIC MECHANISM CONTROLS TRAFFIC IN THE CHAPERONE/USHER JRNL TITL 2 PATHWAY. JRNL REF STRUCTURE V. 20 1861 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22981947 JRNL DOI 10.1016/J.STR.2012.08.016 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 27313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1365 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3069 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3153 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2124 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4288 ; 1.594 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5227 ; 1.552 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 5.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;39.121 ;25.342 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;16.644 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;21.487 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 477 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3448 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 597 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 529 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2059 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1458 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1733 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1968 ; 0.959 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 761 ; 0.253 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3127 ; 1.619 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1336 ; 2.483 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1161 ; 3.819 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5340 -9.9080 62.6760 REMARK 3 T TENSOR REMARK 3 T11: -0.3447 T22: -0.4306 REMARK 3 T33: -0.4590 T12: -0.0201 REMARK 3 T13: 0.0258 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.1876 L22: 3.5708 REMARK 3 L33: 3.6565 L12: 0.2914 REMARK 3 L13: 0.0132 L23: 0.8954 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: -0.1511 S13: 0.0426 REMARK 3 S21: 0.1534 S22: -0.1505 S23: 0.2449 REMARK 3 S31: -0.0217 S32: -0.1330 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4330 -8.4410 81.9080 REMARK 3 T TENSOR REMARK 3 T11: -0.3744 T22: -0.3522 REMARK 3 T33: -0.5225 T12: -0.0339 REMARK 3 T13: 0.0066 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.8747 L22: 6.1205 REMARK 3 L33: 4.2269 L12: -1.0708 REMARK 3 L13: 0.9615 L23: -2.7702 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: 0.1501 S13: -0.1109 REMARK 3 S21: -0.2508 S22: -0.1188 S23: -0.1886 REMARK 3 S31: 0.2691 S32: 0.3194 S33: 0.1570 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 28 C 122 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4160 -1.7550 38.7880 REMARK 3 T TENSOR REMARK 3 T11: -0.3380 T22: -0.3727 REMARK 3 T33: -0.4650 T12: 0.0413 REMARK 3 T13: -0.0220 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 2.7550 L22: 2.3500 REMARK 3 L33: 3.6721 L12: 0.0118 REMARK 3 L13: -1.0897 L23: 0.0040 REMARK 3 S TENSOR REMARK 3 S11: 0.2562 S12: 0.1126 S13: 0.1127 REMARK 3 S21: -0.1215 S22: -0.0963 S23: 0.1145 REMARK 3 S31: -0.1689 S32: -0.2505 S33: -0.1598 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 20 D 122 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4170 -14.9100 88.8050 REMARK 3 T TENSOR REMARK 3 T11: -0.3737 T22: -0.3989 REMARK 3 T33: -0.4934 T12: -0.0488 REMARK 3 T13: 0.0025 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.4539 L22: 3.1705 REMARK 3 L33: 2.7430 L12: 0.0350 REMARK 3 L13: 0.1530 L23: 1.4864 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.0084 S13: 0.0434 REMARK 3 S21: 0.0422 S22: 0.1423 S23: -0.1032 REMARK 3 S31: 0.0158 S32: 0.0677 S33: -0.1231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. SEVERAL DISORDERED REGIONS WERE NOT MODELED REMARK 4 REMARK 4 4B0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27484 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INTERNAL STRUCTURE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROPS 1 MKL OF CAF1AN 6 MG/ML REMARK 280 PLUS 1 MKL OF 20% PEG 3350, 0.2 M AMMONIUM NITRATE, PH 6.3 AT 20 REMARK 280 DEG C, 2-6 MONTHS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.12250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.12250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.92900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.29350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.92900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.29350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.12250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.92900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.29350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.12250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.92900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.29350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2045 LIES ON A SPECIAL POSITION. REMARK 375 HOH D2026 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 TYR A 2 REMARK 465 THR A 3 REMARK 465 PHE A 4 REMARK 465 ASP A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 MET A 8 REMARK 465 LEU A 9 REMARK 465 ASP A 10 REMARK 465 THR A 11 REMARK 465 ASN A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 SER A 16 REMARK 465 ILE A 17 REMARK 465 ASP A 18 REMARK 465 VAL A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 PHE A 22 REMARK 465 ASN A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 GLN A 27 REMARK 465 PHE A 124 REMARK 465 ASP A 125 REMARK 465 GLY A 126 REMARK 465 ILE A 127 REMARK 465 MET A 128 REMARK 465 PRO A 129 REMARK 465 MET A 130 REMARK 465 GLN A 131 REMARK 465 LEU A 132 REMARK 465 TRP A 133 REMARK 465 ASP A 134 REMARK 465 ASP A 135 REMARK 465 GLY A 136 REMARK 465 ALA B 1 REMARK 465 TYR B 2 REMARK 465 THR B 3 REMARK 465 PHE B 4 REMARK 465 ASP B 5 REMARK 465 SER B 6 REMARK 465 THR B 7 REMARK 465 MET B 8 REMARK 465 LEU B 9 REMARK 465 ASP B 10 REMARK 465 THR B 11 REMARK 465 ASN B 12 REMARK 465 SER B 13 REMARK 465 GLY B 14 REMARK 465 GLU B 15 REMARK 465 SER B 16 REMARK 465 ILE B 17 REMARK 465 ASP B 18 REMARK 465 VAL B 19 REMARK 465 SER B 20 REMARK 465 LEU B 21 REMARK 465 PHE B 22 REMARK 465 ASN B 23 REMARK 465 GLN B 24 REMARK 465 GLY B 25 REMARK 465 LEU B 26 REMARK 465 ASP B 125 REMARK 465 GLY B 126 REMARK 465 ILE B 127 REMARK 465 MET B 128 REMARK 465 PRO B 129 REMARK 465 MET B 130 REMARK 465 GLN B 131 REMARK 465 LEU B 132 REMARK 465 TRP B 133 REMARK 465 ASP B 134 REMARK 465 ASP B 135 REMARK 465 GLY B 136 REMARK 465 ALA C 1 REMARK 465 TYR C 2 REMARK 465 THR C 3 REMARK 465 PHE C 4 REMARK 465 ASP C 5 REMARK 465 SER C 6 REMARK 465 THR C 7 REMARK 465 MET C 8 REMARK 465 LEU C 9 REMARK 465 ASP C 10 REMARK 465 THR C 11 REMARK 465 ASN C 12 REMARK 465 SER C 13 REMARK 465 GLY C 14 REMARK 465 GLU C 15 REMARK 465 SER C 16 REMARK 465 ILE C 17 REMARK 465 ASP C 18 REMARK 465 VAL C 19 REMARK 465 SER C 20 REMARK 465 LEU C 21 REMARK 465 PHE C 22 REMARK 465 ASN C 23 REMARK 465 GLN C 24 REMARK 465 GLY C 25 REMARK 465 LEU C 26 REMARK 465 GLN C 27 REMARK 465 LYS C 85 REMARK 465 SER C 86 REMARK 465 GLY C 87 REMARK 465 THR C 88 REMARK 465 ARG C 123 REMARK 465 PHE C 124 REMARK 465 ASP C 125 REMARK 465 GLY C 126 REMARK 465 ILE C 127 REMARK 465 MET C 128 REMARK 465 PRO C 129 REMARK 465 MET C 130 REMARK 465 GLN C 131 REMARK 465 LEU C 132 REMARK 465 TRP C 133 REMARK 465 ASP C 134 REMARK 465 ASP C 135 REMARK 465 GLY C 136 REMARK 465 ALA D 1 REMARK 465 TYR D 2 REMARK 465 THR D 3 REMARK 465 PHE D 4 REMARK 465 ASP D 5 REMARK 465 SER D 6 REMARK 465 THR D 7 REMARK 465 MET D 8 REMARK 465 LEU D 9 REMARK 465 ASP D 10 REMARK 465 THR D 11 REMARK 465 ASN D 12 REMARK 465 SER D 13 REMARK 465 GLY D 14 REMARK 465 GLU D 15 REMARK 465 SER D 16 REMARK 465 ILE D 17 REMARK 465 LYS D 85 REMARK 465 SER D 86 REMARK 465 GLY D 87 REMARK 465 THR D 88 REMARK 465 GLU D 89 REMARK 465 ARG D 123 REMARK 465 PHE D 124 REMARK 465 ASP D 125 REMARK 465 GLY D 126 REMARK 465 ILE D 127 REMARK 465 MET D 128 REMARK 465 PRO D 129 REMARK 465 MET D 130 REMARK 465 GLN D 131 REMARK 465 LEU D 132 REMARK 465 TRP D 133 REMARK 465 ASP D 134 REMARK 465 ASP D 135 REMARK 465 GLY D 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 54 CE NZ REMARK 470 LYS B 58 CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 GLN B 90 CG CD OE1 NE2 REMARK 470 GLN B 109 CG CD OE1 NE2 REMARK 470 LEU C 28 CG CD1 CD2 REMARK 470 ARG C 41 CZ NH1 NH2 REMARK 470 LYS C 42 NZ REMARK 470 GLU C 53 CD OE1 OE2 REMARK 470 LYS C 72 NZ REMARK 470 GLN C 103 CD OE1 NE2 REMARK 470 VAL D 19 CG1 CG2 REMARK 470 LYS D 58 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 35 OG SER A 45 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 91 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2011 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A2071 DISTANCE = 9.79 ANGSTROMS REMARK 525 HOH A2072 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH A2073 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH C2060 DISTANCE = 9.21 ANGSTROMS REMARK 525 HOH C2061 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH C2063 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH D2022 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH D2055 DISTANCE = 9.10 ANGSTROMS REMARK 525 HOH D2058 DISTANCE = 7.64 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XET RELATED DB: PDB REMARK 900 CONSERVED HYDROPHOBIC CLUSTERS ON THE SURFACE OF THE CAF1A USHER C- REMARK 900 TERMINAL DOMAIN ARE IMPORTANT FOR F1 ANTIGEN ASSEMBLY REMARK 900 RELATED ID: 4B0M RELATED DB: PDB REMARK 900 COMPLEX OF THE CAF1AN USHER DOMAIN, CAF1M CHAPERONE AND CAF1 REMARK 900 SUBUNIT FROM YERSINIA PESTIS REMARK 900 RELATED ID: 4AY0 RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE MONOMERIC SUBUNIT-FREE REMARK 900 CAF1M CHAPERONE REMARK 900 RELATED ID: 4AYF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF THE CAF1M:CAF1 CHAPERONE: REMARK 900 SUBUNIT PREASSEMBLY COMPLEX CARRYING THE TYR40ALA MUTATION IN THE REMARK 900 CAF1M CHAPERONE REMARK 900 RELATED ID: 4AZ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF THE CAF1M:CAF1 CHAPERONE: REMARK 900 SUBUNIT PREASSEMBLY COMPLEX CARRYING THE KDKDTN INSERTION AT THE REMARK 900 F1G1 LOOP REGION DBREF 4B0E A 1 136 UNP P26949 CAF1A_YERPE 23 158 DBREF 4B0E B 1 136 UNP P26949 CAF1A_YERPE 23 158 DBREF 4B0E C 1 136 UNP P26949 CAF1A_YERPE 23 158 DBREF 4B0E D 1 136 UNP P26949 CAF1A_YERPE 23 158 SEQRES 1 A 136 ALA TYR THR PHE ASP SER THR MET LEU ASP THR ASN SER SEQRES 2 A 136 GLY GLU SER ILE ASP VAL SER LEU PHE ASN GLN GLY LEU SEQRES 3 A 136 GLN LEU PRO GLY ASN TYR PHE VAL ASN VAL PHE VAL ASN SEQRES 4 A 136 GLY ARG LYS VAL ASP SER GLY ASN ILE ASP PHE ARG LEU SEQRES 5 A 136 GLU LYS HIS ASN GLY LYS GLU LEU LEU TRP PRO CYS LEU SEQRES 6 A 136 SER SER LEU GLN LEU THR LYS TYR GLY ILE ASP ILE ASP SEQRES 7 A 136 LYS TYR PRO ASP LEU ILE LYS SER GLY THR GLU GLN CYS SEQRES 8 A 136 VAL ASP LEU LEU ALA ILE PRO HIS SER ASP VAL GLN PHE SEQRES 9 A 136 TYR PHE ASN GLN GLN LYS LEU SER LEU ILE VAL PRO PRO SEQRES 10 A 136 GLN ALA LEU LEU PRO ARG PHE ASP GLY ILE MET PRO MET SEQRES 11 A 136 GLN LEU TRP ASP ASP GLY SEQRES 1 B 136 ALA TYR THR PHE ASP SER THR MET LEU ASP THR ASN SER SEQRES 2 B 136 GLY GLU SER ILE ASP VAL SER LEU PHE ASN GLN GLY LEU SEQRES 3 B 136 GLN LEU PRO GLY ASN TYR PHE VAL ASN VAL PHE VAL ASN SEQRES 4 B 136 GLY ARG LYS VAL ASP SER GLY ASN ILE ASP PHE ARG LEU SEQRES 5 B 136 GLU LYS HIS ASN GLY LYS GLU LEU LEU TRP PRO CYS LEU SEQRES 6 B 136 SER SER LEU GLN LEU THR LYS TYR GLY ILE ASP ILE ASP SEQRES 7 B 136 LYS TYR PRO ASP LEU ILE LYS SER GLY THR GLU GLN CYS SEQRES 8 B 136 VAL ASP LEU LEU ALA ILE PRO HIS SER ASP VAL GLN PHE SEQRES 9 B 136 TYR PHE ASN GLN GLN LYS LEU SER LEU ILE VAL PRO PRO SEQRES 10 B 136 GLN ALA LEU LEU PRO ARG PHE ASP GLY ILE MET PRO MET SEQRES 11 B 136 GLN LEU TRP ASP ASP GLY SEQRES 1 C 136 ALA TYR THR PHE ASP SER THR MET LEU ASP THR ASN SER SEQRES 2 C 136 GLY GLU SER ILE ASP VAL SER LEU PHE ASN GLN GLY LEU SEQRES 3 C 136 GLN LEU PRO GLY ASN TYR PHE VAL ASN VAL PHE VAL ASN SEQRES 4 C 136 GLY ARG LYS VAL ASP SER GLY ASN ILE ASP PHE ARG LEU SEQRES 5 C 136 GLU LYS HIS ASN GLY LYS GLU LEU LEU TRP PRO CYS LEU SEQRES 6 C 136 SER SER LEU GLN LEU THR LYS TYR GLY ILE ASP ILE ASP SEQRES 7 C 136 LYS TYR PRO ASP LEU ILE LYS SER GLY THR GLU GLN CYS SEQRES 8 C 136 VAL ASP LEU LEU ALA ILE PRO HIS SER ASP VAL GLN PHE SEQRES 9 C 136 TYR PHE ASN GLN GLN LYS LEU SER LEU ILE VAL PRO PRO SEQRES 10 C 136 GLN ALA LEU LEU PRO ARG PHE ASP GLY ILE MET PRO MET SEQRES 11 C 136 GLN LEU TRP ASP ASP GLY SEQRES 1 D 136 ALA TYR THR PHE ASP SER THR MET LEU ASP THR ASN SER SEQRES 2 D 136 GLY GLU SER ILE ASP VAL SER LEU PHE ASN GLN GLY LEU SEQRES 3 D 136 GLN LEU PRO GLY ASN TYR PHE VAL ASN VAL PHE VAL ASN SEQRES 4 D 136 GLY ARG LYS VAL ASP SER GLY ASN ILE ASP PHE ARG LEU SEQRES 5 D 136 GLU LYS HIS ASN GLY LYS GLU LEU LEU TRP PRO CYS LEU SEQRES 6 D 136 SER SER LEU GLN LEU THR LYS TYR GLY ILE ASP ILE ASP SEQRES 7 D 136 LYS TYR PRO ASP LEU ILE LYS SER GLY THR GLU GLN CYS SEQRES 8 D 136 VAL ASP LEU LEU ALA ILE PRO HIS SER ASP VAL GLN PHE SEQRES 9 D 136 TYR PHE ASN GLN GLN LYS LEU SER LEU ILE VAL PRO PRO SEQRES 10 D 136 GLN ALA LEU LEU PRO ARG PHE ASP GLY ILE MET PRO MET SEQRES 11 D 136 GLN LEU TRP ASP ASP GLY FORMUL 5 HOH *235(H2 O) HELIX 1 1 SER A 66 TYR A 73 1 8 HELIX 2 2 ASP A 76 TYR A 80 5 5 HELIX 3 3 PRO A 81 SER A 86 1 6 HELIX 4 4 ASP A 93 ILE A 97 5 5 HELIX 5 5 PHE A 106 GLN A 108 5 3 HELIX 6 6 PRO A 116 ALA A 119 5 4 HELIX 7 7 SER B 66 TYR B 73 1 8 HELIX 8 8 ASP B 76 TYR B 80 5 5 HELIX 9 9 PRO B 81 SER B 86 1 6 HELIX 10 10 ASP B 93 ILE B 97 5 5 HELIX 11 11 PRO B 116 ALA B 119 5 4 HELIX 12 12 SER C 66 TYR C 73 1 8 HELIX 13 13 ASP C 76 TYR C 80 5 5 HELIX 14 14 TYR C 80 ILE C 84 5 5 HELIX 15 15 ASP C 93 ILE C 97 5 5 HELIX 16 16 PRO C 116 ALA C 119 5 4 HELIX 17 17 VAL D 19 GLN D 24 1 6 HELIX 18 18 SER D 66 TYR D 73 1 8 HELIX 19 19 ASP D 76 TYR D 80 5 5 HELIX 20 20 TYR D 80 ILE D 84 5 5 HELIX 21 21 ASP D 93 ILE D 97 5 5 HELIX 22 22 PHE D 106 GLN D 108 5 3 HELIX 23 23 PRO D 116 ALA D 119 5 4 SHEET 1 AA 5 LYS A 58 PRO A 63 0 SHEET 2 AA 5 ARG A 41 HIS A 55 -1 O ARG A 51 N TRP A 62 SHEET 3 AA 5 GLY A 30 VAL A 38 -1 O GLY A 30 N PHE A 50 SHEET 4 AA 5 LYS A 110 ILE A 114 1 O LEU A 111 N PHE A 37 SHEET 5 AA 5 ASP A 101 TYR A 105 -1 O ASP A 101 N ILE A 114 SHEET 1 BA 5 LYS B 58 CYS B 64 0 SHEET 2 BA 5 ARG B 41 HIS B 55 -1 O ASP B 49 N CYS B 64 SHEET 3 BA 5 GLY B 30 VAL B 38 -1 O GLY B 30 N PHE B 50 SHEET 4 BA 5 LYS B 110 ILE B 114 1 O LEU B 111 N PHE B 37 SHEET 5 BA 5 ASP B 101 TYR B 105 -1 O ASP B 101 N ILE B 114 SHEET 1 CA 5 LYS C 58 CYS C 64 0 SHEET 2 CA 5 ARG C 41 HIS C 55 -1 O ASP C 49 N CYS C 64 SHEET 3 CA 5 GLY C 30 VAL C 38 -1 O GLY C 30 N PHE C 50 SHEET 4 CA 5 LYS C 110 ILE C 114 1 O LEU C 111 N PHE C 37 SHEET 5 CA 5 ASP C 101 TYR C 105 -1 O ASP C 101 N ILE C 114 SHEET 1 DA 5 LYS D 58 PRO D 63 0 SHEET 2 DA 5 ARG D 41 HIS D 55 -1 O ARG D 51 N TRP D 62 SHEET 3 DA 5 GLY D 30 VAL D 38 -1 O GLY D 30 N PHE D 50 SHEET 4 DA 5 LYS D 110 ILE D 114 1 O LEU D 111 N PHE D 37 SHEET 5 DA 5 ASP D 101 TYR D 105 -1 O ASP D 101 N ILE D 114 SSBOND 1 CYS A 64 CYS A 91 1555 1555 2.07 SSBOND 2 CYS B 64 CYS B 91 1555 1555 2.09 SSBOND 3 CYS C 64 CYS C 91 1555 1555 2.04 SSBOND 4 CYS D 64 CYS D 91 1555 1555 2.02 CRYST1 61.858 68.587 192.245 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005202 0.00000