HEADER TRANSCRIPTION 12-JUL-12 4B27 TITLE TRP RNA-BINDING ATTENUATION PROTEIN: MODIFYING SYMMETRY AND STABILITY TITLE 2 OF A CIRCULAR OLIGOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ATTENUATION PROTEIN MTRB; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: TRP RNA-BINDING ATTENUATION PROTEIN, TRP RNA-BINDING COMPND 5 ATTENUATION PROTEIN, TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET9A KEYWDS TRANSCRIPTION, TRANSCRIPTION REGULATION, THERMOFLUOR, PROTEIN KEYWDS 2 ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR O.W.BAYFIELD,C.CHEN,A.R.PATTERSON,W.LUAN,C.SMITS,P.GOLLNICK, AUTHOR 2 A.A.ANTSON REVDAT 3 20-DEC-23 4B27 1 REMARK REVDAT 2 03-OCT-12 4B27 1 JRNL REVDAT 1 19-SEP-12 4B27 0 JRNL AUTH O.W.BAYFIELD,C.CHEN,A.R.PATTERSON,W.LUAN,C.SMITS,P.GOLLNICK, JRNL AUTH 2 A.A.ANTSON JRNL TITL TRP RNA-BINDING ATTENUATION PROTEIN: MODIFYING SYMMETRY AND JRNL TITL 2 STABILITY OF A CIRCULAR OLIGOMER. JRNL REF PLOS ONE V. 7 44309 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22970197 JRNL DOI 10.1371/JOURNAL.PONE.0044309 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 13396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 825 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 115.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.41000 REMARK 3 B22 (A**2) : -9.14000 REMARK 3 B33 (A**2) : 17.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.984 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.336 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3084 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4152 ; 1.265 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;28.527 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;17.908 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.274 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2250 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6985 18.7874 17.6316 REMARK 3 T TENSOR REMARK 3 T11: 0.2075 T22: 0.1894 REMARK 3 T33: 0.2715 T12: -0.0046 REMARK 3 T13: 0.0407 T23: 0.1921 REMARK 3 L TENSOR REMARK 3 L11: 6.8926 L22: 7.4825 REMARK 3 L33: 5.9462 L12: -0.6371 REMARK 3 L13: -2.6829 L23: 1.7211 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: 0.7032 S13: 0.3012 REMARK 3 S21: -0.9278 S22: -0.2381 S23: -0.5684 REMARK 3 S31: -0.3418 S32: -0.0931 S33: 0.3706 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3071 27.1700 17.6548 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.1966 REMARK 3 T33: 0.2412 T12: 0.0038 REMARK 3 T13: -0.0913 T23: 0.1877 REMARK 3 L TENSOR REMARK 3 L11: 9.2392 L22: 6.3647 REMARK 3 L33: 10.1098 L12: -0.5552 REMARK 3 L13: -4.7977 L23: 0.7921 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: 0.8607 S13: 0.8668 REMARK 3 S21: -0.7765 S22: -0.3028 S23: 0.1638 REMARK 3 S31: -0.4445 S32: -0.0762 S33: 0.3780 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 81 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4771 28.2245 17.6900 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.1686 REMARK 3 T33: 0.2296 T12: 0.0405 REMARK 3 T13: -0.1185 T23: 0.0969 REMARK 3 L TENSOR REMARK 3 L11: 9.5054 L22: 6.5163 REMARK 3 L33: 7.2395 L12: 1.1180 REMARK 3 L13: -3.0168 L23: -2.5854 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: 0.8952 S13: 1.1242 REMARK 3 S21: -0.7178 S22: -0.1233 S23: 0.3605 REMARK 3 S31: -0.0318 S32: -0.1090 S33: 0.1318 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 81 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8026 21.7416 17.6574 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.2115 REMARK 3 T33: 0.1850 T12: 0.0236 REMARK 3 T13: -0.1559 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 7.5568 L22: 6.7582 REMARK 3 L33: 5.8728 L12: 0.7767 REMARK 3 L13: -2.0859 L23: -1.7736 REMARK 3 S TENSOR REMARK 3 S11: -0.1302 S12: 0.8275 S13: 0.3896 REMARK 3 S21: -0.7658 S22: -0.2347 S23: 0.2219 REMARK 3 S31: -0.0066 S32: -0.2273 S33: 0.3649 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 7 E 81 REMARK 3 ORIGIN FOR THE GROUP (A): -27.1783 9.3652 17.7060 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.2072 REMARK 3 T33: 0.2242 T12: 0.0121 REMARK 3 T13: -0.1848 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 5.9068 L22: 9.3240 REMARK 3 L33: 9.2840 L12: -0.0684 REMARK 3 L13: -0.0060 L23: -4.6673 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: 0.6215 S13: 0.1078 REMARK 3 S21: -0.7041 S22: -0.1143 S23: 0.9397 REMARK 3 S31: -0.0882 S32: -0.3417 S33: 0.2372 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 7 F 81 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2073 -5.4740 17.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.2453 REMARK 3 T33: 0.2101 T12: -0.0592 REMARK 3 T13: -0.1274 T23: -0.1175 REMARK 3 L TENSOR REMARK 3 L11: 5.5494 L22: 7.7107 REMARK 3 L33: 7.2771 L12: -2.2801 REMARK 3 L13: 2.6672 L23: -3.5672 REMARK 3 S TENSOR REMARK 3 S11: -0.1798 S12: 0.6664 S13: -0.4005 REMARK 3 S21: -0.7229 S22: -0.0407 S23: 0.7450 REMARK 3 S31: 0.0707 S32: -0.1678 S33: 0.2205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4B27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9163 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14253 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ZZQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PROPANE (PH 8.5), 200 REMARK 280 MM KSCN AND 13% PEG 3350 (V/V) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.73350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.07550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.73350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.07550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 72 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 72 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN C, SER 72 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN D, SER 72 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN E, SER 72 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN F, SER 72 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 LYS A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 LYS A 71 REMARK 465 ASN A 72 REMARK 465 GLU A 73 REMARK 465 LYS A 74 REMARK 465 LYS A 75 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLN B 3 REMARK 465 LYS B 4 REMARK 465 HIS B 5 REMARK 465 SER B 6 REMARK 465 LYS B 71 REMARK 465 ASN B 72 REMARK 465 GLU B 73 REMARK 465 LYS B 74 REMARK 465 LYS B 75 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 GLN C 3 REMARK 465 LYS C 4 REMARK 465 HIS C 5 REMARK 465 SER C 6 REMARK 465 LYS C 71 REMARK 465 ASN C 72 REMARK 465 GLU C 73 REMARK 465 LYS C 74 REMARK 465 LYS C 75 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 GLN D 3 REMARK 465 LYS D 4 REMARK 465 HIS D 5 REMARK 465 SER D 6 REMARK 465 LYS D 71 REMARK 465 ASN D 72 REMARK 465 GLU D 73 REMARK 465 LYS D 74 REMARK 465 LYS D 75 REMARK 465 MET E 1 REMARK 465 ASN E 2 REMARK 465 GLN E 3 REMARK 465 LYS E 4 REMARK 465 HIS E 5 REMARK 465 SER E 6 REMARK 465 LYS E 71 REMARK 465 ASN E 72 REMARK 465 GLU E 73 REMARK 465 LYS E 74 REMARK 465 LYS E 75 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLN F 3 REMARK 465 LYS F 4 REMARK 465 HIS F 5 REMARK 465 SER F 6 REMARK 465 LYS F 71 REMARK 465 ASN F 72 REMARK 465 GLU F 73 REMARK 465 LYS F 74 REMARK 465 LYS F 75 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 81 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 81 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP C 81 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP D 81 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP E 81 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP F 81 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WAP RELATED DB: PDB REMARK 900 TRP RNA-BINDING ATTENUATION PROTEIN IN COMPLEX WITH 1WAP 3L- REMARK 900 TRYPTOPHAN 1WAP 4 REMARK 900 RELATED ID: 3ZZQ RELATED DB: PDB REMARK 900 ENGINEERED 12-SUBUNIT BACILLUS SUBTILIS TRP RNA-BINDING ATTENUATION REMARK 900 PROTEIN (TRAP) DBREF 4B27 A 1 75 UNP P19466 MTRB_BACSU 1 75 DBREF 4B27 B 1 75 UNP P19466 MTRB_BACSU 1 75 DBREF 4B27 C 1 75 UNP P19466 MTRB_BACSU 1 75 DBREF 4B27 D 1 75 UNP P19466 MTRB_BACSU 1 75 DBREF 4B27 E 1 75 UNP P19466 MTRB_BACSU 1 75 DBREF 4B27 F 1 75 UNP P19466 MTRB_BACSU 1 75 SEQADV 4B27 ASN A 72 UNP P19466 SER 72 ENGINEERED MUTATION SEQADV 4B27 ASN B 72 UNP P19466 SER 72 ENGINEERED MUTATION SEQADV 4B27 ASN C 72 UNP P19466 SER 72 ENGINEERED MUTATION SEQADV 4B27 ASN D 72 UNP P19466 SER 72 ENGINEERED MUTATION SEQADV 4B27 ASN E 72 UNP P19466 SER 72 ENGINEERED MUTATION SEQADV 4B27 ASN F 72 UNP P19466 SER 72 ENGINEERED MUTATION SEQRES 1 A 75 MET ASN GLN LYS HIS SER SER ASP PHE VAL VAL ILE LYS SEQRES 2 A 75 ALA VAL GLU ASP GLY VAL ASN VAL ILE GLY LEU THR ARG SEQRES 3 A 75 GLY THR ASP THR LYS PHE HIS HIS SER GLU LYS LEU ASP SEQRES 4 A 75 LYS GLY GLU VAL ILE ILE ALA GLN PHE THR GLU HIS THR SEQRES 5 A 75 SER ALA ILE LYS VAL ARG GLY GLU ALA LEU ILE GLN THR SEQRES 6 A 75 ALA TYR GLY GLU MET LYS ASN GLU LYS LYS SEQRES 1 B 75 MET ASN GLN LYS HIS SER SER ASP PHE VAL VAL ILE LYS SEQRES 2 B 75 ALA VAL GLU ASP GLY VAL ASN VAL ILE GLY LEU THR ARG SEQRES 3 B 75 GLY THR ASP THR LYS PHE HIS HIS SER GLU LYS LEU ASP SEQRES 4 B 75 LYS GLY GLU VAL ILE ILE ALA GLN PHE THR GLU HIS THR SEQRES 5 B 75 SER ALA ILE LYS VAL ARG GLY GLU ALA LEU ILE GLN THR SEQRES 6 B 75 ALA TYR GLY GLU MET LYS ASN GLU LYS LYS SEQRES 1 C 75 MET ASN GLN LYS HIS SER SER ASP PHE VAL VAL ILE LYS SEQRES 2 C 75 ALA VAL GLU ASP GLY VAL ASN VAL ILE GLY LEU THR ARG SEQRES 3 C 75 GLY THR ASP THR LYS PHE HIS HIS SER GLU LYS LEU ASP SEQRES 4 C 75 LYS GLY GLU VAL ILE ILE ALA GLN PHE THR GLU HIS THR SEQRES 5 C 75 SER ALA ILE LYS VAL ARG GLY GLU ALA LEU ILE GLN THR SEQRES 6 C 75 ALA TYR GLY GLU MET LYS ASN GLU LYS LYS SEQRES 1 D 75 MET ASN GLN LYS HIS SER SER ASP PHE VAL VAL ILE LYS SEQRES 2 D 75 ALA VAL GLU ASP GLY VAL ASN VAL ILE GLY LEU THR ARG SEQRES 3 D 75 GLY THR ASP THR LYS PHE HIS HIS SER GLU LYS LEU ASP SEQRES 4 D 75 LYS GLY GLU VAL ILE ILE ALA GLN PHE THR GLU HIS THR SEQRES 5 D 75 SER ALA ILE LYS VAL ARG GLY GLU ALA LEU ILE GLN THR SEQRES 6 D 75 ALA TYR GLY GLU MET LYS ASN GLU LYS LYS SEQRES 1 E 75 MET ASN GLN LYS HIS SER SER ASP PHE VAL VAL ILE LYS SEQRES 2 E 75 ALA VAL GLU ASP GLY VAL ASN VAL ILE GLY LEU THR ARG SEQRES 3 E 75 GLY THR ASP THR LYS PHE HIS HIS SER GLU LYS LEU ASP SEQRES 4 E 75 LYS GLY GLU VAL ILE ILE ALA GLN PHE THR GLU HIS THR SEQRES 5 E 75 SER ALA ILE LYS VAL ARG GLY GLU ALA LEU ILE GLN THR SEQRES 6 E 75 ALA TYR GLY GLU MET LYS ASN GLU LYS LYS SEQRES 1 F 75 MET ASN GLN LYS HIS SER SER ASP PHE VAL VAL ILE LYS SEQRES 2 F 75 ALA VAL GLU ASP GLY VAL ASN VAL ILE GLY LEU THR ARG SEQRES 3 F 75 GLY THR ASP THR LYS PHE HIS HIS SER GLU LYS LEU ASP SEQRES 4 F 75 LYS GLY GLU VAL ILE ILE ALA GLN PHE THR GLU HIS THR SEQRES 5 F 75 SER ALA ILE LYS VAL ARG GLY GLU ALA LEU ILE GLN THR SEQRES 6 F 75 ALA TYR GLY GLU MET LYS ASN GLU LYS LYS HET TRP A 81 15 HET TRP B 81 15 HET TRP C 81 15 HET TRP D 81 15 HET TRP E 81 15 HET TRP F 81 15 HETNAM TRP TRYPTOPHAN FORMUL 7 TRP 6(C11 H12 N2 O2) FORMUL 13 HOH *27(H2 O) SHEET 1 AA 4 VAL A 43 GLN A 47 0 SHEET 2 AA 4 PHE A 9 ALA A 14 -1 O VAL A 10 N ALA A 46 SHEET 3 AA 4 ALA A 61 THR A 65 -1 O LEU A 62 N LYS A 13 SHEET 4 AA 4 GLY A 68 GLU A 69 -1 O GLY A 68 N THR A 65 SHEET 1 AB 7 PHE A 32 LEU A 38 0 SHEET 2 AB 7 VAL A 19 THR A 25 -1 O VAL A 19 N LEU A 38 SHEET 3 AB 7 THR A 52 ARG A 58 -1 N SER A 53 O LEU A 24 SHEET 4 AB 7 VAL B 43 GLN B 47 -1 O VAL B 43 N VAL A 57 SHEET 5 AB 7 PHE B 9 ALA B 14 -1 O VAL B 10 N ALA B 46 SHEET 6 AB 7 ALA B 61 THR B 65 -1 O LEU B 62 N LYS B 13 SHEET 7 AB 7 GLY B 68 GLU B 69 -1 O GLY B 68 N THR B 65 SHEET 1 BA 7 PHE B 32 LEU B 38 0 SHEET 2 BA 7 VAL B 19 THR B 25 -1 O VAL B 19 N LEU B 38 SHEET 3 BA 7 THR B 52 ARG B 58 -1 N SER B 53 O LEU B 24 SHEET 4 BA 7 VAL C 43 GLN C 47 -1 O VAL C 43 N VAL B 57 SHEET 5 BA 7 PHE C 9 ALA C 14 -1 O VAL C 10 N ALA C 46 SHEET 6 BA 7 ALA C 61 THR C 65 -1 O LEU C 62 N LYS C 13 SHEET 7 BA 7 GLY C 68 MET C 70 -1 O GLY C 68 N THR C 65 SHEET 1 CA 7 PHE C 32 LEU C 38 0 SHEET 2 CA 7 VAL C 19 THR C 25 -1 O VAL C 19 N LEU C 38 SHEET 3 CA 7 THR C 52 ARG C 58 -1 N SER C 53 O LEU C 24 SHEET 4 CA 7 VAL D 43 GLN D 47 -1 O VAL D 43 N VAL C 57 SHEET 5 CA 7 PHE D 9 ALA D 14 -1 O VAL D 10 N ALA D 46 SHEET 6 CA 7 ALA D 61 THR D 65 -1 O LEU D 62 N LYS D 13 SHEET 7 CA 7 GLY D 68 MET D 70 -1 O GLY D 68 N THR D 65 SHEET 1 DA 7 PHE D 32 LEU D 38 0 SHEET 2 DA 7 VAL D 19 THR D 25 -1 O VAL D 19 N LEU D 38 SHEET 3 DA 7 THR D 52 ARG D 58 -1 N SER D 53 O LEU D 24 SHEET 4 DA 7 VAL E 43 GLN E 47 -1 O VAL E 43 N VAL D 57 SHEET 5 DA 7 PHE E 9 ALA E 14 -1 O VAL E 10 N ALA E 46 SHEET 6 DA 7 ALA E 61 THR E 65 -1 O LEU E 62 N LYS E 13 SHEET 7 DA 7 GLY E 68 MET E 70 -1 O GLY E 68 N THR E 65 SHEET 1 EA 7 PHE E 32 LEU E 38 0 SHEET 2 EA 7 VAL E 19 THR E 25 -1 O VAL E 19 N LEU E 38 SHEET 3 EA 7 THR E 52 ARG E 58 -1 N SER E 53 O LEU E 24 SHEET 4 EA 7 VAL F 43 GLN F 47 -1 O VAL F 43 N VAL E 57 SHEET 5 EA 7 PHE F 9 ALA F 14 -1 O VAL F 10 N ALA F 46 SHEET 6 EA 7 ALA F 61 THR F 65 -1 O LEU F 62 N LYS F 13 SHEET 7 EA 7 GLY F 68 MET F 70 -1 O GLY F 68 N THR F 65 SHEET 1 FA 3 PHE F 32 LEU F 38 0 SHEET 2 FA 3 VAL F 19 THR F 25 -1 O VAL F 19 N LEU F 38 SHEET 3 FA 3 THR F 52 ARG F 58 -1 N SER F 53 O LEU F 24 SITE 1 AC1 10 GLY A 23 GLN A 47 THR A 49 THR A 52 SITE 2 AC1 10 THR F 25 ARG F 26 GLY F 27 ASP F 29 SITE 3 AC1 10 THR F 30 SER F 53 SITE 1 AC2 10 THR A 25 ARG A 26 GLY A 27 ASP A 29 SITE 2 AC2 10 THR A 30 SER A 53 GLY B 23 GLN B 47 SITE 3 AC2 10 THR B 49 THR B 52 SITE 1 AC3 10 THR B 25 ARG B 26 GLY B 27 ASP B 29 SITE 2 AC3 10 THR B 30 SER B 53 GLY C 23 GLN C 47 SITE 3 AC3 10 THR C 49 THR C 52 SITE 1 AC4 10 THR C 25 ARG C 26 GLY C 27 ASP C 29 SITE 2 AC4 10 THR C 30 SER C 53 GLY D 23 GLN D 47 SITE 3 AC4 10 THR D 49 THR D 52 SITE 1 AC5 10 THR D 25 ARG D 26 GLY D 27 ASP D 29 SITE 2 AC5 10 THR D 30 SER D 53 GLY E 23 GLN E 47 SITE 3 AC5 10 THR E 49 THR E 52 SITE 1 AC6 10 THR E 25 ARG E 26 GLY E 27 ASP E 29 SITE 2 AC6 10 THR E 30 SER E 53 GLY F 23 GLN F 47 SITE 3 AC6 10 THR F 49 THR F 52 CRYST1 109.467 110.151 46.229 90.00 90.00 90.00 P 21 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021631 0.00000