HEADER TRANSPORT PROTEIN 19-JUL-12 4B2Z TITLE STRUCTURE OF OSH6 IN COMPLEX WITH PHOSPHATIDYLSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROL-BINDING PROTEIN HOMOLOG 6; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: OSH6, YKR003W, YK102; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS TRANSPORT PROTEIN, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.MAEDA,K.ANAND,A.CHIAPPARINO,A.KUMAR,M.POLETTO,M.KAKSONEN,A.C.GAVIN REVDAT 6 20-DEC-23 4B2Z 1 REMARK REVDAT 5 12-DEC-18 4B2Z 1 COMPND SOURCE REMARK DBREF REVDAT 4 18-SEP-13 4B2Z 1 JRNL REVDAT 3 21-AUG-13 4B2Z 1 JRNL REVDAT 2 07-AUG-13 4B2Z 1 JRNL REVDAT 1 26-JUN-13 4B2Z 0 JRNL AUTH K.MAEDA,K.ANAND,A.CHIAPPARINO,A.KUMAR,M.POLETTO,M.KAKSONEN, JRNL AUTH 2 A.C.GAVIN JRNL TITL INTERACTOME MAP UNCOVERS PHOSPHATIDYLSERINE TRANSPORT BY JRNL TITL 2 OXYSTEROL-BINDING PROTEINS JRNL REF NATURE V. 501 257 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23934110 JRNL DOI 10.1038/NATURE12430 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 65887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5794 - 4.0554 1.00 7963 163 0.1821 0.2176 REMARK 3 2 4.0554 - 3.2191 1.00 7842 160 0.1740 0.2021 REMARK 3 3 3.2191 - 2.8123 1.00 7790 159 0.1904 0.2044 REMARK 3 4 2.8123 - 2.5552 1.00 7837 160 0.2010 0.2588 REMARK 3 5 2.5552 - 2.3720 1.00 7781 159 0.2031 0.2528 REMARK 3 6 2.3720 - 2.2322 1.00 7741 158 0.2011 0.2441 REMARK 3 7 2.2322 - 2.1204 0.93 7220 147 0.2085 0.2630 REMARK 3 8 2.1204 - 2.0281 0.74 5743 117 0.2201 0.3137 REMARK 3 9 2.0281 - 1.9500 0.60 4652 95 0.2534 0.3029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 31.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.18600 REMARK 3 B22 (A**2) : -2.96460 REMARK 3 B33 (A**2) : 7.15060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.30050 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6832 REMARK 3 ANGLE : 1.219 9216 REMARK 3 CHIRALITY : 0.095 963 REMARK 3 PLANARITY : 0.006 1183 REMARK 3 DIHEDRAL : 19.982 2662 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 10.9179 -17.9992 30.9626 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.1168 REMARK 3 T33: 0.0765 T12: -0.0099 REMARK 3 T13: -0.0147 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5846 L22: 0.3148 REMARK 3 L33: 0.5060 L12: 0.0597 REMARK 3 L13: -0.0103 L23: -0.0990 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.1578 S13: 0.0427 REMARK 3 S21: -0.0134 S22: 0.0409 S23: 0.0140 REMARK 3 S31: 0.0467 S32: 0.0334 S33: -0.0442 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 36:191 OR RESSEQ REMARK 3 193:218 OR RESSEQ 223:259 OR RESSEQ 261: REMARK 3 270 OR RESSEQ 272:320 OR RESSEQ 326:381 REMARK 3 OR RESSEQ 385:396 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 35:191 OR RESSEQ REMARK 3 193:218 OR RESSEQ 223:259 OR RESSEQ 261: REMARK 3 270 OR RESSEQ 272:320 OR RESSEQ 326:381 REMARK 3 OR RESSEQ 385:396 ) REMARK 3 ATOM PAIRS NUMBER : 2839 REMARK 3 RMSD : 0.057 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.630 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZHT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.5, 13% PEG6000, 5% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.00000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 VAL A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 PHE A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 LYS A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 LYS A 31 REMARK 465 ASP A 32 REMARK 465 GLN A 33 REMARK 465 PRO A 34 REMARK 465 ILE A 35 REMARK 465 LYS A 435 REMARK 465 LYS A 436 REMARK 465 MET A 437 REMARK 465 ILE A 438 REMARK 465 GLU A 439 REMARK 465 ASN A 440 REMARK 465 GLU A 441 REMARK 465 LYS A 442 REMARK 465 GLN A 443 REMARK 465 ASN A 444 REMARK 465 PRO A 445 REMARK 465 ALA A 446 REMARK 465 LYS A 447 REMARK 465 GLN A 448 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 THR B 7 REMARK 465 VAL B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 HIS B 13 REMARK 465 ARG B 14 REMARK 465 LEU B 15 REMARK 465 SER B 16 REMARK 465 LYS B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 PHE B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 ASN B 23 REMARK 465 LYS B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 HIS B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 THR B 30 REMARK 465 LYS B 31 REMARK 465 ASP B 32 REMARK 465 GLN B 33 REMARK 465 PRO B 34 REMARK 465 LYS B 435 REMARK 465 LYS B 436 REMARK 465 MET B 437 REMARK 465 ILE B 438 REMARK 465 GLU B 439 REMARK 465 ASN B 440 REMARK 465 GLU B 441 REMARK 465 LYS B 442 REMARK 465 GLN B 443 REMARK 465 ASN B 444 REMARK 465 PRO B 445 REMARK 465 ALA B 446 REMARK 465 LYS B 447 REMARK 465 GLN B 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 35 CG1 CG2 CD1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 52 CB CG CD1 CD2 REMARK 480 GLN A 57 CG CD OE1 NE2 REMARK 480 ARG A 59 CB CG CD NE CZ NH1 NH2 REMARK 480 PHE B 229 CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 237 O HOH B 2113 2.08 REMARK 500 O HOH A 2010 O HOH A 2022 2.16 REMARK 500 O GLY B 237 O PHE B 253 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2011 O HOH B 2195 4556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 258 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 VAL A 259 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 76 47.52 -89.00 REMARK 500 LEU A 228 -63.47 -101.18 REMARK 500 ASP A 238 -114.44 -113.18 REMARK 500 PHE A 260 64.88 -100.58 REMARK 500 ASP A 287 -106.27 -140.36 REMARK 500 ARG A 318 150.38 -45.63 REMARK 500 LYS B 76 47.21 -88.91 REMARK 500 LEU B 228 -64.91 -100.22 REMARK 500 ASP B 238 -115.91 -112.90 REMARK 500 PHE B 260 -0.84 75.15 REMARK 500 ASP B 287 -109.15 -142.06 REMARK 500 ARG B 318 150.48 -46.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 257 TYR A 258 80.73 REMARK 500 GLY B 257 TYR B 258 130.70 REMARK 500 PHE B 260 GLY B 261 132.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P5S A 1436 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P5S A 1436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P5S B 1436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTU A 1437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B 1437 DBREF 4B2Z A 1 448 UNP Q02201 OSH6_YEAST 1 448 DBREF 4B2Z B 1 448 UNP Q02201 OSH6_YEAST 1 448 SEQRES 1 A 448 MET GLY SER LYS LYS LEU THR VAL GLY SER ASP SER HIS SEQRES 2 A 448 ARG LEU SER LYS SER SER PHE SER SER ASN LYS SER SER SEQRES 3 A 448 HIS SER ALA THR LYS ASP GLN PRO ILE ASP THR ASP ASP SEQRES 4 A 448 ILE ASP GLU ASP ASP GLU SER GLY HIS ASN ILE ILE LEU SEQRES 5 A 448 ASN ILE ILE SER GLN LEU ARG PRO GLY CYS ASP LEU THR SEQRES 6 A 448 ARG ILE THR LEU PRO THR PHE ILE LEU GLU LYS LYS SER SEQRES 7 A 448 MET LEU GLU ARG VAL THR ASN GLN LEU GLN PHE PRO GLU SEQRES 8 A 448 PHE LEU LEU GLN ALA HIS SER GLU LYS ASP PRO LEU LYS SEQRES 9 A 448 ARG PHE LEU TYR VAL MET LYS TRP TYR LEU ALA GLY TRP SEQRES 10 A 448 HIS ILE ALA PRO LYS ALA VAL LYS LYS PRO LEU ASN PRO SEQRES 11 A 448 VAL LEU GLY GLU TYR PHE THR ALA TYR TRP ASP LEU PRO SEQRES 12 A 448 ASN LYS GLN GLN ALA TYR TYR ILE SER GLU GLN THR SER SEQRES 13 A 448 HIS HIS PRO PRO GLU CYS ALA TYR PHE TYR MET ILE PRO SEQRES 14 A 448 GLU SER SER ILE ARG VAL ASP GLY VAL VAL ILE PRO LYS SEQRES 15 A 448 SER ARG PHE LEU GLY ASN SER SER ALA ALA MET MET ASP SEQRES 16 A 448 GLY SER THR VAL LEU GLN PHE LEU ASP ILE LYS ASP GLY SEQRES 17 A 448 ASN GLY LYS PRO GLU LYS TYR VAL LEU THR GLN PRO ASN SEQRES 18 A 448 VAL TYR VAL ARG GLY ILE LEU PHE GLY LYS MET ARG ILE SEQRES 19 A 448 GLU LEU GLY ASP HIS MET ILE ILE LYS SER PRO ASN PHE SEQRES 20 A 448 GLN ALA ASP ILE GLU PHE LYS THR LYS GLY TYR VAL PHE SEQRES 21 A 448 GLY THR TYR ASP ALA ILE GLU GLY THR VAL LYS ASP TYR SEQRES 22 A 448 ASP GLY ASN ALA TYR TYR GLU ILE SER GLY LYS TRP ASN SEQRES 23 A 448 ASP VAL MET TYR LEU LYS ASP LEU LYS GLN PRO ARG SER SEQRES 24 A 448 SER PRO LYS VAL PHE LEU ASP THR HIS LYS GLU SER PRO SEQRES 25 A 448 LEU ARG PRO LYS VAL ARG PRO LEU SER GLU GLN GLY GLU SEQRES 26 A 448 TYR GLU SER ARG LYS LEU TRP LYS LYS VAL THR ASP ALA SEQRES 27 A 448 LEU ALA VAL ARG ASN HIS PRO VAL ALA THR GLU GLU LYS SEQRES 28 A 448 PHE GLN ILE GLU ASP HIS GLN ARG GLN LEU ALA LYS LYS SEQRES 29 A 448 ARG ILE GLU ASP GLY VAL GLU PHE HIS PRO LYS LEU PHE SEQRES 30 A 448 ARG ARG SER LYS PRO GLY GLU ASP LEU ASP TYR CYS ILE SEQRES 31 A 448 TYR LYS ASN ILE PRO VAL ASP GLU ASP PRO GLU LYS GLN SEQRES 32 A 448 ILE ARG SER ILE LEU GLN ILE ALA PRO ILE LEU PRO GLY SEQRES 33 A 448 GLN GLN PHE THR ASP LYS PHE PHE ILE PRO ALA PHE GLU SEQRES 34 A 448 LYS ILE LYS SER GLN LYS LYS MET ILE GLU ASN GLU LYS SEQRES 35 A 448 GLN ASN PRO ALA LYS GLN SEQRES 1 B 448 MET GLY SER LYS LYS LEU THR VAL GLY SER ASP SER HIS SEQRES 2 B 448 ARG LEU SER LYS SER SER PHE SER SER ASN LYS SER SER SEQRES 3 B 448 HIS SER ALA THR LYS ASP GLN PRO ILE ASP THR ASP ASP SEQRES 4 B 448 ILE ASP GLU ASP ASP GLU SER GLY HIS ASN ILE ILE LEU SEQRES 5 B 448 ASN ILE ILE SER GLN LEU ARG PRO GLY CYS ASP LEU THR SEQRES 6 B 448 ARG ILE THR LEU PRO THR PHE ILE LEU GLU LYS LYS SER SEQRES 7 B 448 MET LEU GLU ARG VAL THR ASN GLN LEU GLN PHE PRO GLU SEQRES 8 B 448 PHE LEU LEU GLN ALA HIS SER GLU LYS ASP PRO LEU LYS SEQRES 9 B 448 ARG PHE LEU TYR VAL MET LYS TRP TYR LEU ALA GLY TRP SEQRES 10 B 448 HIS ILE ALA PRO LYS ALA VAL LYS LYS PRO LEU ASN PRO SEQRES 11 B 448 VAL LEU GLY GLU TYR PHE THR ALA TYR TRP ASP LEU PRO SEQRES 12 B 448 ASN LYS GLN GLN ALA TYR TYR ILE SER GLU GLN THR SER SEQRES 13 B 448 HIS HIS PRO PRO GLU CYS ALA TYR PHE TYR MET ILE PRO SEQRES 14 B 448 GLU SER SER ILE ARG VAL ASP GLY VAL VAL ILE PRO LYS SEQRES 15 B 448 SER ARG PHE LEU GLY ASN SER SER ALA ALA MET MET ASP SEQRES 16 B 448 GLY SER THR VAL LEU GLN PHE LEU ASP ILE LYS ASP GLY SEQRES 17 B 448 ASN GLY LYS PRO GLU LYS TYR VAL LEU THR GLN PRO ASN SEQRES 18 B 448 VAL TYR VAL ARG GLY ILE LEU PHE GLY LYS MET ARG ILE SEQRES 19 B 448 GLU LEU GLY ASP HIS MET ILE ILE LYS SER PRO ASN PHE SEQRES 20 B 448 GLN ALA ASP ILE GLU PHE LYS THR LYS GLY TYR VAL PHE SEQRES 21 B 448 GLY THR TYR ASP ALA ILE GLU GLY THR VAL LYS ASP TYR SEQRES 22 B 448 ASP GLY ASN ALA TYR TYR GLU ILE SER GLY LYS TRP ASN SEQRES 23 B 448 ASP VAL MET TYR LEU LYS ASP LEU LYS GLN PRO ARG SER SEQRES 24 B 448 SER PRO LYS VAL PHE LEU ASP THR HIS LYS GLU SER PRO SEQRES 25 B 448 LEU ARG PRO LYS VAL ARG PRO LEU SER GLU GLN GLY GLU SEQRES 26 B 448 TYR GLU SER ARG LYS LEU TRP LYS LYS VAL THR ASP ALA SEQRES 27 B 448 LEU ALA VAL ARG ASN HIS PRO VAL ALA THR GLU GLU LYS SEQRES 28 B 448 PHE GLN ILE GLU ASP HIS GLN ARG GLN LEU ALA LYS LYS SEQRES 29 B 448 ARG ILE GLU ASP GLY VAL GLU PHE HIS PRO LYS LEU PHE SEQRES 30 B 448 ARG ARG SER LYS PRO GLY GLU ASP LEU ASP TYR CYS ILE SEQRES 31 B 448 TYR LYS ASN ILE PRO VAL ASP GLU ASP PRO GLU LYS GLN SEQRES 32 B 448 ILE ARG SER ILE LEU GLN ILE ALA PRO ILE LEU PRO GLY SEQRES 33 B 448 GLN GLN PHE THR ASP LYS PHE PHE ILE PRO ALA PHE GLU SEQRES 34 B 448 LYS ILE LYS SER GLN LYS LYS MET ILE GLU ASN GLU LYS SEQRES 35 B 448 GLN ASN PRO ALA LYS GLN HET SO4 A1435 5 HET P5S A1436 53 HET DTU A1437 8 HET SO4 B1435 5 HET P5S B1436 54 HET DTT B1437 8 HETNAM SO4 SULFATE ION HETNAM P5S O-[(R)-{[(2R)-2,3-BIS(OCTADECANOYLOXY) HETNAM 2 P5S PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN P5S PHOSPHATIDYL SERINE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 P5S 2(C42 H82 N O10 P) FORMUL 5 DTU C4 H10 O2 S2 FORMUL 8 DTT C4 H10 O2 S2 FORMUL 9 HOH *363(H2 O) HELIX 1 1 ASP A 36 ILE A 40 5 5 HELIX 2 2 ASP A 44 SER A 56 1 13 HELIX 3 3 PRO A 70 PHE A 72 5 3 HELIX 4 4 MET A 79 GLN A 86 1 8 HELIX 5 5 PHE A 89 GLU A 99 1 11 HELIX 6 6 ASP A 101 GLY A 116 1 16 HELIX 7 7 PRO A 169 SER A 171 5 3 HELIX 8 8 PRO A 319 GLN A 323 5 5 HELIX 9 9 GLU A 327 TRP A 332 1 6 HELIX 10 10 TRP A 332 VAL A 341 1 10 HELIX 11 11 ASN A 343 ASP A 368 1 26 HELIX 12 12 ASP A 399 ALA A 411 1 13 HELIX 13 13 THR A 420 ILE A 425 1 6 HELIX 14 14 PRO A 426 GLN A 434 1 9 HELIX 15 15 ASP B 36 ILE B 40 5 5 HELIX 16 16 ASP B 44 SER B 56 1 13 HELIX 17 17 PRO B 70 PHE B 72 5 3 HELIX 18 18 MET B 79 GLN B 86 1 8 HELIX 19 19 PHE B 89 GLU B 99 1 11 HELIX 20 20 ASP B 101 GLY B 116 1 16 HELIX 21 21 PRO B 169 SER B 171 5 3 HELIX 22 22 PRO B 319 GLN B 323 5 5 HELIX 23 23 GLU B 327 TRP B 332 1 6 HELIX 24 24 TRP B 332 VAL B 341 1 10 HELIX 25 25 ASN B 343 ASP B 368 1 26 HELIX 26 26 ASP B 399 GLN B 409 1 11 HELIX 27 27 PRO B 426 GLN B 434 1 9 SHEET 1 AA 2 LEU A 74 SER A 78 0 SHEET 2 AA 2 LYS A 126 LEU A 128 1 O LYS A 126 N GLU A 75 SHEET 1 AB12 TYR A 135 ASP A 141 0 SHEET 2 AB12 GLN A 147 SER A 156 -1 O ALA A 148 N TRP A 140 SHEET 3 AB12 GLU A 161 ILE A 168 -1 O GLU A 161 N SER A 156 SHEET 4 AB12 ILE A 173 VAL A 179 -1 O ILE A 173 N ILE A 168 SHEET 5 AB12 SER A 197 LYS A 206 -1 O SER A 197 N VAL A 178 SHEET 6 AB12 PRO A 212 THR A 218 -1 O GLU A 213 N PHE A 202 SHEET 7 AB12 HIS A 239 LYS A 243 -1 O ILE A 241 N THR A 218 SHEET 8 AB12 GLN A 248 PHE A 253 -1 O ALA A 249 N ILE A 242 SHEET 9 AB12 ILE A 266 LYS A 271 -1 O GLU A 267 N GLU A 252 SHEET 10 AB12 ALA A 277 GLY A 283 -1 N TYR A 278 O VAL A 270 SHEET 11 AB12 VAL A 288 ASP A 293 -1 O TYR A 290 N SER A 282 SHEET 12 AB12 LYS A 302 ASP A 306 -1 O LYS A 302 N LEU A 291 SHEET 1 AC 4 PRO A 181 PHE A 185 0 SHEET 2 AC 4 SER A 189 MET A 194 -1 O ALA A 191 N ARG A 184 SHEET 3 AC 4 VAL A 222 ARG A 225 -1 O VAL A 222 N ALA A 192 SHEET 4 AC 4 ARG A 233 LEU A 236 -1 O ARG A 233 N ARG A 225 SHEET 1 AD 2 PHE A 377 ARG A 379 0 SHEET 2 AD 2 TYR A 388 ILE A 390 -1 O CYS A 389 N ARG A 378 SHEET 1 BA 2 LEU B 74 SER B 78 0 SHEET 2 BA 2 LYS B 126 LEU B 128 1 O LYS B 126 N GLU B 75 SHEET 1 BB12 TYR B 135 ASP B 141 0 SHEET 2 BB12 GLN B 147 SER B 156 -1 O ALA B 148 N TRP B 140 SHEET 3 BB12 GLU B 161 ILE B 168 -1 O GLU B 161 N SER B 156 SHEET 4 BB12 ILE B 173 VAL B 179 -1 O ILE B 173 N ILE B 168 SHEET 5 BB12 SER B 197 LYS B 206 -1 O SER B 197 N VAL B 178 SHEET 6 BB12 PRO B 212 THR B 218 -1 O GLU B 213 N PHE B 202 SHEET 7 BB12 HIS B 239 LYS B 243 -1 O ILE B 241 N THR B 218 SHEET 8 BB12 GLN B 248 PHE B 253 -1 O ALA B 249 N ILE B 242 SHEET 9 BB12 ILE B 266 LYS B 271 -1 O GLU B 267 N GLU B 252 SHEET 10 BB12 ALA B 277 GLY B 283 -1 N TYR B 278 O VAL B 270 SHEET 11 BB12 VAL B 288 ASP B 293 -1 O TYR B 290 N SER B 282 SHEET 12 BB12 LYS B 302 ASP B 306 -1 O LYS B 302 N LEU B 291 SHEET 1 BC 4 PRO B 181 PHE B 185 0 SHEET 2 BC 4 SER B 189 MET B 194 -1 O ALA B 191 N ARG B 184 SHEET 3 BC 4 VAL B 222 ARG B 225 -1 O VAL B 222 N ALA B 192 SHEET 4 BC 4 ARG B 233 LEU B 236 -1 O ARG B 233 N ARG B 225 SHEET 1 BD 2 PHE B 377 ARG B 379 0 SHEET 2 BD 2 TYR B 388 ILE B 390 -1 O CYS B 389 N ARG B 378 CISPEP 1 HIS A 158 PRO A 159 0 -0.87 CISPEP 2 HIS B 158 PRO B 159 0 -1.55 SITE 1 AC1 7 LEU A 132 GLY A 133 PHE A 372 LYS A 375 SITE 2 AC1 7 HOH A2059 HOH A2145 HOH A2167 SITE 1 AC2 9 MET B 79 PRO B 130 GLN B 154 PRO B 160 SITE 2 AC2 9 GLU B 161 CYS B 162 VAL B 179 PRO B 181 SITE 3 AC2 9 HOH B2061 SITE 1 AC3 26 LEU A 64 ILE A 67 LEU A 69 ILE A 73 SITE 2 AC3 26 MET A 79 ARG A 82 GLN A 86 TRP A 112 SITE 3 AC3 26 LYS A 125 LYS A 126 PRO A 127 ASN A 129 SITE 4 AC3 26 PRO A 160 SER A 183 SER A 190 ALA A 191 SITE 5 AC3 26 ALA A 192 MET A 194 THR A 198 VAL A 222 SITE 6 AC3 26 MET A 232 ILE A 234 HOH A2049 HOH A2054 SITE 7 AC3 26 HOH A2055 HOH A2087 SITE 1 AC4 26 LEU B 64 ILE B 67 THR B 68 LEU B 69 SITE 2 AC4 26 MET B 79 GLN B 86 TRP B 112 TYR B 113 SITE 3 AC4 26 VAL B 124 LYS B 126 PRO B 127 ASN B 129 SITE 4 AC4 26 PRO B 160 TYR B 164 SER B 183 SER B 190 SITE 5 AC4 26 ALA B 191 ALA B 192 THR B 198 VAL B 222 SITE 6 AC4 26 MET B 232 HOH B2055 HOH B2061 HOH B2062 SITE 7 AC4 26 HOH B2063 HOH B2096 SITE 1 AC5 10 LEU A 408 GLN A 409 PRO A 412 GLN A 417 SITE 2 AC5 10 GLN A 418 PHE A 419 THR A 420 LYS A 422 SITE 3 AC5 10 PHE A 423 HOH A2158 SITE 1 AC6 8 LYS A 243 SER A 244 PRO A 245 TYR A 273 SITE 2 AC6 8 GLY B 61 ARG B 184 LEU B 186 MET B 193 CRYST1 120.000 72.600 122.900 90.00 111.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008333 0.000000 0.003266 0.00000 SCALE2 0.000000 0.013774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008739 0.00000