HEADER HYDROLASE 07-AUG-12 4B5Q TITLE THE LYTIC POLYSACCHARIDE MONOOXYGENASE GH61D STRUCTURE FROM THE TITLE 2 BASIDIOMYCOTA FUNGUS PHANEROCHAETE CHRYSOSPORIUM CAVEAT 4B5Q ASN B 203 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 61 PROTEIN D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 19-235; COMPND 5 SYNONYM: LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHANEROCHAETE CHRYSOSPORIUM; SOURCE 3 ORGANISM_TAXID: 5306; SOURCE 4 STRAIN: K-3; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPICZA-A KEYWDS HYDROLASE, METAL BINDING SITE, CELLULOSE DEGRADATION, COPPER KEYWDS 2 MONOOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR M.WU,G.T.BECKHAM,A.M.LARSSON,T.ISHIDA,S.KIM,M.F.CROWLEY,C.M.PAYNE, AUTHOR 2 S.J.HORN,B.WESTERENG,J.STAHLBERG,V.G.H.EIJSINK,M.SANDGREN REVDAT 6 23-OCT-24 4B5Q 1 REMARK REVDAT 5 20-DEC-23 4B5Q 1 REMARK HETSYN REVDAT 4 29-JUL-20 4B5Q 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 08-MAY-19 4B5Q 1 REMARK LINK REVDAT 2 22-MAY-13 4B5Q 1 JRNL REVDAT 1 03-APR-13 4B5Q 0 JRNL AUTH M.WU,G.T.BECKHAM,A.M.LARSSON,T.ISHIDA,S.KIM,C.M.PAYNE, JRNL AUTH 2 M.E.HIMMEL,M.F.CROWLEY,S.J.HORN,B.WESTERENG,K.IGARASHI, JRNL AUTH 3 M.SAMEJIMA,J.STAHLBERG,V.G.H.EIJSINK,M.SANDGREN JRNL TITL CRYSTAL STRUCTURE AND COMPUTATIONAL CHARACTERIZATION OF THE JRNL TITL 2 LYTIC POLYSACCHARIDE MONOOXYGENASE GH61D FROM THE JRNL TITL 3 BASIDIOMYCOTA FUNGUS PHANEROCHAETE CHRYSOSPORIUM JRNL REF J.BIOL.CHEM. V. 288 12828 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23525113 JRNL DOI 10.1074/JBC.M113.459396 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 37442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1977 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2649 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.705 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3494 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4813 ; 1.165 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 6.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;33.783 ;25.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;12.412 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.723 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2794 ; 0.005 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39420 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3EII REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12MG/ML PROTEIN, WITH EQUAL VOLUME 2.1 REMARK 280 M DL-MALIC ACID PH 7.0 USING SITTING DROP CRYSTALLIZATION, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.65400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.76050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.65400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.76050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2091 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLU A 113 CD OE1 OE2 REMARK 480 LYS A 202 CD CE NZ REMARK 480 ASN A 203 CB CG OD1 ND2 REMARK 480 TYR B 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS B 202 CB CG CD CE NZ REMARK 480 ASN B 203 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 28 CB TYR A 28 CG -0.096 REMARK 500 GLU A 113 CG GLU A 113 CD -0.311 REMARK 500 TYR B 28 CB TYR B 28 CG -0.136 REMARK 500 ASN B 203 CA ASN B 203 CB -0.276 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 203 CB - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 TYR B 28 CA - CB - CG ANGL. DEV. = 21.9 DEGREES REMARK 500 TYR B 28 CB - CG - CD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 TYR B 28 CB - CG - CD1 ANGL. DEV. = -12.3 DEGREES REMARK 500 LYS B 202 CB - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 ASN B 203 CB - CA - C ANGL. DEV. = 20.4 DEGREES REMARK 500 ASN B 203 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 4 70.91 -118.24 REMARK 500 PHE B 4 68.15 -118.75 REMARK 500 ASN B 30 11.84 59.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 221 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 ND1 REMARK 620 2 HIS A 76 NE2 168.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 221 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 1 ND1 REMARK 620 2 HIS B 76 NE2 167.3 REMARK 620 N 1 DBREF 4B5Q A 1 217 UNP H1AE14 H1AE14_PHACH 19 235 DBREF 4B5Q B 1 217 UNP H1AE14 H1AE14_PHACH 19 235 SEQRES 1 A 217 HIS TYR THR PHE PRO ASP PHE ILE GLU PRO SER GLY THR SEQRES 2 A 217 VAL THR GLY ASP TRP VAL TYR VAL ARG GLU THR GLN ASN SEQRES 3 A 217 HIS TYR SER ASN GLY PRO VAL THR ASP VAL THR SER PRO SEQRES 4 A 217 GLU PHE ARG CYS TYR GLU LEU ASP LEU GLN ASN THR ALA SEQRES 5 A 217 GLY GLN THR GLN THR ALA THR VAL SER ALA GLY ASP THR SEQRES 6 A 217 VAL GLY PHE LYS ALA ASN SER ALA ILE TYR HIS PRO GLY SEQRES 7 A 217 TYR LEU ASP VAL MET MET SER PRO ALA SER PRO ALA ALA SEQRES 8 A 217 ASN SER PRO GLU ALA GLY THR GLY GLN THR TRP PHE LYS SEQRES 9 A 217 ILE TYR GLU GLU LYS PRO GLN PHE GLU ASN GLY GLN LEU SEQRES 10 A 217 VAL PHE ASP THR THR GLN GLN GLU VAL THR PHE THR ILE SEQRES 11 A 217 PRO LYS SER LEU PRO SER GLY GLN TYR LEU LEU ARG ILE SEQRES 12 A 217 GLU GLN ILE ALA LEU HIS VAL ALA SER SER TYR GLY GLY SEQRES 13 A 217 ALA GLN PHE TYR ILE GLY CYS ALA GLN LEU ASN VAL GLU SEQRES 14 A 217 ASN GLY GLY ASN GLY THR PRO GLY PRO LEU VAL SER ILE SEQRES 15 A 217 PRO GLY VAL TYR THR GLY TYR GLU PRO GLY ILE LEU ILE SEQRES 16 A 217 ASN ILE TYR ASN LEU PRO LYS ASN PHE THR GLY TYR PRO SEQRES 17 A 217 ALA PRO GLY PRO ALA VAL TRP GLN GLY SEQRES 1 B 217 HIS TYR THR PHE PRO ASP PHE ILE GLU PRO SER GLY THR SEQRES 2 B 217 VAL THR GLY ASP TRP VAL TYR VAL ARG GLU THR GLN ASN SEQRES 3 B 217 HIS TYR SER ASN GLY PRO VAL THR ASP VAL THR SER PRO SEQRES 4 B 217 GLU PHE ARG CYS TYR GLU LEU ASP LEU GLN ASN THR ALA SEQRES 5 B 217 GLY GLN THR GLN THR ALA THR VAL SER ALA GLY ASP THR SEQRES 6 B 217 VAL GLY PHE LYS ALA ASN SER ALA ILE TYR HIS PRO GLY SEQRES 7 B 217 TYR LEU ASP VAL MET MET SER PRO ALA SER PRO ALA ALA SEQRES 8 B 217 ASN SER PRO GLU ALA GLY THR GLY GLN THR TRP PHE LYS SEQRES 9 B 217 ILE TYR GLU GLU LYS PRO GLN PHE GLU ASN GLY GLN LEU SEQRES 10 B 217 VAL PHE ASP THR THR GLN GLN GLU VAL THR PHE THR ILE SEQRES 11 B 217 PRO LYS SER LEU PRO SER GLY GLN TYR LEU LEU ARG ILE SEQRES 12 B 217 GLU GLN ILE ALA LEU HIS VAL ALA SER SER TYR GLY GLY SEQRES 13 B 217 ALA GLN PHE TYR ILE GLY CYS ALA GLN LEU ASN VAL GLU SEQRES 14 B 217 ASN GLY GLY ASN GLY THR PRO GLY PRO LEU VAL SER ILE SEQRES 15 B 217 PRO GLY VAL TYR THR GLY TYR GLU PRO GLY ILE LEU ILE SEQRES 16 B 217 ASN ILE TYR ASN LEU PRO LYS ASN PHE THR GLY TYR PRO SEQRES 17 B 217 ALA PRO GLY PRO ALA VAL TRP GLN GLY MODRES 4B5Q SER A 11 SER GLYCOSYLATION SITE HET CU A 221 1 HET GOL A 222 6 HET MAN A 226 11 HET CU B 221 1 HET GOL B 222 6 HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 CU 2(CU 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 MAN C6 H12 O6 FORMUL 8 HOH *366(H2 O) HELIX 1 1 SER A 38 ARG A 42 5 5 HELIX 2 2 THR A 51 THR A 55 5 5 HELIX 3 3 SER B 38 ARG B 42 5 5 HELIX 4 4 THR B 51 THR B 55 5 5 SHEET 1 AA 3 ASP A 6 ILE A 8 0 SHEET 2 AA 3 THR A 65 LYS A 69 -1 O GLY A 67 N ILE A 8 SHEET 3 AA 3 GLU A 125 THR A 129 -1 O VAL A 126 N PHE A 68 SHEET 1 AB 5 ALA A 58 SER A 61 0 SHEET 2 AB 5 GLN A 158 GLU A 169 1 O GLN A 165 N ALA A 58 SHEET 3 AB 5 GLY A 137 ALA A 147 -1 O GLY A 137 N VAL A 168 SHEET 4 AB 5 GLY A 78 PRO A 86 -1 O TYR A 79 N ILE A 146 SHEET 5 AB 5 PHE A 103 GLU A 108 -1 O PHE A 103 N MET A 84 SHEET 1 AC 2 GLN A 111 GLU A 113 0 SHEET 2 AC 2 GLN A 116 VAL A 118 -1 O GLN A 116 N GLU A 113 SHEET 1 BA 3 ASP B 6 ILE B 8 0 SHEET 2 BA 3 THR B 65 LYS B 69 -1 O GLY B 67 N ILE B 8 SHEET 3 BA 3 GLU B 125 THR B 129 -1 O VAL B 126 N PHE B 68 SHEET 1 BB 5 ALA B 58 SER B 61 0 SHEET 2 BB 5 GLN B 158 GLU B 169 1 O GLN B 165 N ALA B 58 SHEET 3 BB 5 GLY B 137 ALA B 147 -1 O GLY B 137 N VAL B 168 SHEET 4 BB 5 GLY B 78 PRO B 86 -1 O TYR B 79 N ILE B 146 SHEET 5 BB 5 PHE B 103 GLU B 108 -1 O PHE B 103 N MET B 84 SHEET 1 BC 2 GLN B 111 GLU B 113 0 SHEET 2 BC 2 GLN B 116 VAL B 118 -1 O GLN B 116 N GLU B 113 SSBOND 1 CYS A 43 CYS A 163 1555 1555 2.05 SSBOND 2 CYS B 43 CYS B 163 1555 1555 2.04 LINK OG SER A 11 C1 MAN A 226 1555 1555 1.45 LINK ND1 HIS A 1 CU CU A 221 1555 1555 1.94 LINK NE2 HIS A 76 CU CU A 221 1555 1555 1.94 LINK ND1 HIS B 1 CU CU B 221 1555 1555 2.05 LINK NE2 HIS B 76 CU CU B 221 1555 1555 1.93 CISPEP 1 SER A 88 PRO A 89 0 2.93 CISPEP 2 SER A 88 PRO A 89 0 4.94 CISPEP 3 GLY A 177 PRO A 178 0 0.13 CISPEP 4 ILE A 182 PRO A 183 0 -3.49 CISPEP 5 SER B 88 PRO B 89 0 1.65 CISPEP 6 SER B 88 PRO B 89 0 1.46 CISPEP 7 GLY B 177 PRO B 178 0 -2.32 CISPEP 8 ILE B 182 PRO B 183 0 -3.50 CRYST1 149.308 37.521 79.848 90.00 117.41 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006698 0.000000 0.003473 0.00000 SCALE2 0.000000 0.026652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014108 0.00000