HEADER OXIDOREDUCTASE 09-AUG-12 4B64 TITLE A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ORNITHINE N5 MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-ORNITHINE N5-OXYGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS OXIDOREDUCTASE, SIDEROPHORE, FLAVIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FRANCESCHINI,M.FEDKENHEUER,N.J.VOGELAAR,H.H.ROBINSON,P.SOBRADO, AUTHOR 2 A.MATTEVI REVDAT 3 20-DEC-23 4B64 1 REMARK REVDAT 2 08-MAY-19 4B64 1 REMARK REVDAT 1 03-OCT-12 4B64 0 JRNL AUTH S.FRANCESCHINI,M.FEDKENHEUER,N.J.VOGELAAR,H.H.ROBINSON, JRNL AUTH 2 P.SOBRADO,A.MATTEVI JRNL TITL STRUCTURAL INSIGHT INTO THE MECHANISM OF OXYGEN ACTIVATION JRNL TITL 2 AND SUBSTRATE SELECTIVITY OF FLAVIN-DEPENDENT JRNL TITL 3 N-HYDROXYLATING MONOOXYGENASES. JRNL REF BIOCHEMISTRY V. 51 7043 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22928747 JRNL DOI 10.1021/BI301072W REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1136 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 164 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.363 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3782 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5135 ; 1.050 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 4.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;34.723 ;23.434 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;13.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2822 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 213 REMARK 3 RESIDUE RANGE : A 408 A 455 REMARK 3 RESIDUE RANGE : A 464 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2550 -30.3390 30.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.0134 T22: 0.0852 REMARK 3 T33: 0.3085 T12: -0.0150 REMARK 3 T13: 0.0193 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.6020 L22: 0.9774 REMARK 3 L33: 1.1612 L12: 0.2369 REMARK 3 L13: 1.4193 L23: 0.2072 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.0571 S13: 0.0938 REMARK 3 S21: 0.0674 S22: 0.0182 S23: -0.0500 REMARK 3 S31: -0.0639 S32: 0.0987 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 284 REMARK 3 RESIDUE RANGE : A 324 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7250 -19.1510 -2.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.0823 REMARK 3 T33: 0.3663 T12: -0.0396 REMARK 3 T13: 0.0210 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.3930 L22: 1.0561 REMARK 3 L33: 3.0107 L12: 0.2351 REMARK 3 L13: 0.8352 L23: 0.4462 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.0200 S13: 0.1426 REMARK 3 S21: 0.0313 S22: 0.0133 S23: -0.1214 REMARK 3 S31: -0.5106 S32: 0.1482 S33: 0.0562 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 323 REMARK 3 RESIDUE RANGE : A 457 A 463 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7870 -44.5540 14.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.0598 T22: 0.1457 REMARK 3 T33: 0.4595 T12: 0.0383 REMARK 3 T13: 0.0302 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.4812 L22: 1.2363 REMARK 3 L33: 4.5223 L12: 1.7511 REMARK 3 L13: 2.2301 L23: 1.5932 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.1067 S13: -0.0688 REMARK 3 S21: -0.0473 S22: 0.0825 S23: -0.0454 REMARK 3 S31: -0.0035 S32: 0.4548 S33: -0.0222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4B64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B63 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION METHOD, REMARK 280 WITH A RESERVOIR SOLUTION CONTAINING; 1.6 M AMMONIUM SULFATE, REMARK 280 0.1 M HEPES, 2% DIOXANE, PH 6.6., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.81000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.37400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.76700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.81000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.37400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.76700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.81000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.37400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.76700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.81000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.37400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.76700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -84.74800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -77.62000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -84.74800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -77.62000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2048 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 TYR A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 MET A 15 REMARK 465 ARG A 16 REMARK 465 ASN A 17 REMARK 465 MET A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 GLN A 22 REMARK 465 ARG A 23 REMARK 465 LEU A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 ASP A 27 REMARK 465 HIS A 74 REMARK 465 GLU A 384 REMARK 465 SER A 385 REMARK 465 GLU A 386 REMARK 465 GLY A 387 REMARK 465 ALA A 388 REMARK 465 ALA A 389 REMARK 465 ASN A 390 REMARK 465 ASP A 391 REMARK 465 VAL A 392 REMARK 465 VAL A 492 REMARK 465 GLN A 493 REMARK 465 GLY A 494 REMARK 465 HIS A 495 REMARK 465 GLN A 496 REMARK 465 LEU A 497 REMARK 465 ARG A 498 REMARK 465 ALA A 499 REMARK 465 MET A 500 REMARK 465 LEU A 501 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 30 NE CZ NH1 NH2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 LYS A 100 CE NZ REMARK 470 ARG A 191 NE CZ NH1 NH2 REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 215 CE NZ REMARK 470 LYS A 241 CD CE NZ REMARK 470 LYS A 243 CE NZ REMARK 470 LYS A 245 CE NZ REMARK 470 LYS A 267 CD CE NZ REMARK 470 LYS A 303 CE NZ REMARK 470 ARG A 314 CD NE CZ NH1 NH2 REMARK 470 LYS A 320 CD CE NZ REMARK 470 LYS A 361 CE NZ REMARK 470 LYS A 379 CD CE NZ REMARK 470 LYS A 382 CE NZ REMARK 470 LYS A 393 CG CD CE NZ REMARK 470 ARG A 414 CD NE CZ NH1 NH2 REMARK 470 LYS A 431 CE NZ REMARK 470 GLU A 448 CD OE1 OE2 REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 GLN A 486 CG CD OE1 NE2 REMARK 470 LEU A 487 CG CD1 CD2 REMARK 470 ARG A 489 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 368 CG HIS A 368 CD2 0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 1.13 -67.14 REMARK 500 HIS A 91 58.91 38.95 REMARK 500 LYS A 107 45.42 -85.85 REMARK 500 ASP A 108 -162.98 -78.24 REMARK 500 ALA A 110 -33.24 -138.90 REMARK 500 SER A 254 13.39 -145.58 REMARK 500 ASN A 323 -40.40 -141.01 REMARK 500 HIS A 367 20.99 -144.93 REMARK 500 ALA A 404 64.14 -101.14 REMARK 500 TYR A 436 -5.83 77.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1514 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B63 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND REMARK 900 ORNITHINE REMARK 900 RELATED ID: 4B65 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), REDUCED STATE BOUND TO REMARK 900 NADP(H) REMARK 900 RELATED ID: 4B67 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND REMARK 900 TO NADP AND ORNITHINE REMARK 900 RELATED ID: 4B68 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND REMARK 900 TO NADP AND ARG REMARK 900 RELATED ID: 4B69 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO ORNITHINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 GENBANK REFERENCE GB AAT84594.1 DBREF 4B64 A 1 501 UNP Q5SE95 Q5SE95_ASPFM 1 501 SEQRES 1 A 501 MET GLU SER VAL GLU ARG LYS SER GLU SER SER TYR LEU SEQRES 2 A 501 GLY MET ARG ASN MET GLN PRO GLU GLN ARG LEU SER LEU SEQRES 3 A 501 ASP PRO PRO ARG LEU ARG SER THR PRO GLN ASP GLU LEU SEQRES 4 A 501 HIS ASP LEU LEU CYS VAL GLY PHE GLY PRO ALA SER LEU SEQRES 5 A 501 ALA ILE ALA ILE ALA LEU HIS ASP ALA LEU ASP PRO ARG SEQRES 6 A 501 LEU ASN LYS SER ALA SER ASN ILE HIS ALA GLN PRO LYS SEQRES 7 A 501 ILE CYS PHE LEU GLU ARG GLN LYS GLN PHE ALA TRP HIS SEQRES 8 A 501 SER GLY MET LEU VAL PRO GLY SER LYS MET GLN ILE SER SEQRES 9 A 501 PHE ILE LYS ASP LEU ALA THR LEU ARG ASP PRO ARG SER SEQRES 10 A 501 SER PHE THR PHE LEU ASN TYR LEU HIS GLN LYS GLY ARG SEQRES 11 A 501 LEU ILE HIS PHE THR ASN LEU SER THR PHE LEU PRO ALA SEQRES 12 A 501 ARG LEU GLU PHE GLU ASP TYR MET ARG TRP CYS ALA GLN SEQRES 13 A 501 GLN PHE SER ASP VAL VAL ALA TYR GLY GLU GLU VAL VAL SEQRES 14 A 501 GLU VAL ILE PRO GLY LYS SER ASP PRO SER SER SER VAL SEQRES 15 A 501 VAL ASP PHE PHE THR VAL ARG SER ARG ASN VAL GLU THR SEQRES 16 A 501 GLY GLU ILE SER ALA ARG ARG THR ARG LYS VAL VAL ILE SEQRES 17 A 501 ALA ILE GLY GLY THR ALA LYS MET PRO SER GLY LEU PRO SEQRES 18 A 501 GLN ASP PRO ARG ILE ILE HIS SER SER LYS TYR CYS THR SEQRES 19 A 501 THR LEU PRO ALA LEU LEU LYS ASP LYS SER LYS PRO TYR SEQRES 20 A 501 ASN ILE ALA VAL LEU GLY SER GLY GLN SER ALA ALA GLU SEQRES 21 A 501 ILE PHE HIS ASP LEU GLN LYS ARG TYR PRO ASN SER ARG SEQRES 22 A 501 THR THR LEU ILE MET ARG ASP SER ALA MET ARG PRO SER SEQRES 23 A 501 ASP ASP SER PRO PHE VAL ASN GLU ILE PHE ASN PRO GLU SEQRES 24 A 501 ARG VAL ASP LYS PHE TYR SER GLN SER ALA ALA GLU ARG SEQRES 25 A 501 GLN ARG SER LEU LEU ALA ASP LYS ALA THR ASN TYR SER SEQRES 26 A 501 VAL VAL ARG LEU GLU LEU ILE GLU GLU ILE TYR ASN ASP SEQRES 27 A 501 MET TYR LEU GLN ARG VAL LYS ASN PRO ASP GLU THR GLN SEQRES 28 A 501 TRP GLN HIS ARG ILE LEU PRO GLU ARG LYS ILE THR ARG SEQRES 29 A 501 VAL GLU HIS HIS GLY PRO GLN SER ARG MET ARG ILE HIS SEQRES 30 A 501 LEU LYS SER SER LYS PRO GLU SER GLU GLY ALA ALA ASN SEQRES 31 A 501 ASP VAL LYS GLU THR LEU GLU VAL ASP ALA LEU MET VAL SEQRES 32 A 501 ALA THR GLY TYR ASN ARG ASN ALA HIS GLU ARG LEU LEU SEQRES 33 A 501 SER LYS VAL GLN HIS LEU ARG PRO THR GLY GLN ASP GLN SEQRES 34 A 501 TRP LYS PRO HIS ARG ASP TYR ARG VAL GLU MET ASP PRO SEQRES 35 A 501 SER LYS VAL SER SER GLU ALA GLY ILE TRP LEU GLN GLY SEQRES 36 A 501 CYS ASN GLU ARG THR HIS GLY LEU SER ASP SER LEU LEU SEQRES 37 A 501 SER VAL LEU ALA VAL ARG GLY GLY GLU MET VAL GLN SER SEQRES 38 A 501 ILE PHE GLY GLU GLN LEU GLU ARG ALA ALA VAL GLN GLY SEQRES 39 A 501 HIS GLN LEU ARG ALA MET LEU HET LYS A1503 10 HET FAD A1504 53 HET NAP A1505 48 HET SO4 A1506 5 HET GOL A1507 6 HET GOL A1508 6 HET GOL A1509 6 HET GOL A1510 6 HET GOL A1511 6 HET GOL A1512 6 HET GOL A1513 6 HET GOL A1514 6 HETNAM LYS LYSINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 LYS C6 H15 N2 O2 1+ FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 SO4 O4 S 2- FORMUL 6 GOL 8(C3 H8 O3) FORMUL 14 HOH *179(H2 O) HELIX 1 1 GLY A 48 LEU A 62 1 15 HELIX 2 2 ASN A 67 ASN A 72 5 6 HELIX 3 3 HIS A 91 LEU A 95 5 5 HELIX 4 4 SER A 104 ASP A 108 5 5 HELIX 5 5 THR A 120 LYS A 128 1 9 HELIX 6 6 ARG A 130 ASN A 136 1 7 HELIX 7 7 ALA A 143 GLN A 156 1 14 HELIX 8 8 GLN A 157 ASP A 160 5 4 HELIX 9 9 LYS A 231 LEU A 240 1 10 HELIX 10 10 GLY A 255 TYR A 269 1 15 HELIX 11 11 PHE A 291 PRO A 298 5 8 HELIX 12 12 GLU A 299 SER A 306 1 8 HELIX 13 13 SER A 308 ASP A 319 1 12 HELIX 14 14 LYS A 320 ASN A 323 5 4 HELIX 15 15 ARG A 328 ASN A 346 1 19 HELIX 16 16 ASP A 348 TRP A 352 5 5 HELIX 17 17 ALA A 411 LEU A 416 1 6 HELIX 18 18 SER A 417 ARG A 423 5 7 HELIX 19 19 ASN A 457 GLY A 462 1 6 HELIX 20 20 VAL A 470 ALA A 491 1 22 SHEET 1 AA 5 VAL A 162 TYR A 164 0 SHEET 2 AA 5 ILE A 79 GLU A 83 1 O PHE A 81 N ALA A 163 SHEET 3 AA 5 HIS A 40 VAL A 45 1 O LEU A 42 N CYS A 80 SHEET 4 AA 5 ILE A 198 ILE A 208 1 O ARG A 202 N HIS A 40 SHEET 5 AA 5 GLY A 450 LEU A 453 -1 O GLY A 450 N VAL A 206 SHEET 1 AB 6 VAL A 162 TYR A 164 0 SHEET 2 AB 6 ILE A 79 GLU A 83 1 O PHE A 81 N ALA A 163 SHEET 3 AB 6 HIS A 40 VAL A 45 1 O LEU A 42 N CYS A 80 SHEET 4 AB 6 ILE A 198 ILE A 208 1 O ARG A 202 N HIS A 40 SHEET 5 AB 6 PHE A 185 ASN A 192 -1 O PHE A 186 N THR A 203 SHEET 6 AB 6 GLU A 166 GLY A 174 -1 O GLU A 167 N ARG A 191 SHEET 1 AC 2 GLY A 450 LEU A 453 0 SHEET 2 AC 2 ILE A 198 ILE A 208 -1 O ARG A 204 N GLY A 450 SHEET 1 AD 2 THR A 213 ALA A 214 0 SHEET 2 AD 2 TYR A 407 ASN A 408 -1 O ASN A 408 N THR A 213 SHEET 1 AE 5 ILE A 226 HIS A 228 0 SHEET 2 AE 5 ALA A 400 VAL A 403 1 O LEU A 401 N ILE A 227 SHEET 3 AE 5 ASN A 248 LEU A 252 1 O ALA A 250 N MET A 402 SHEET 4 AE 5 ARG A 273 ILE A 277 1 O ARG A 273 N ILE A 249 SHEET 5 AE 5 ARG A 355 LEU A 357 1 O ARG A 355 N LEU A 276 SHEET 1 AF 3 ARG A 360 GLU A 366 0 SHEET 2 AF 3 MET A 374 SER A 380 -1 O ARG A 375 N GLU A 366 SHEET 3 AF 3 THR A 395 VAL A 398 -1 O LEU A 396 N ILE A 376 SITE 1 AC1 10 GLN A 102 ILE A 103 LYS A 107 ASN A 293 SITE 2 AC1 10 PHE A 296 ASN A 323 SER A 469 NAP A1505 SITE 3 AC1 10 HOH A2034 HOH A2117 SITE 1 AC2 32 GLY A 46 GLY A 48 PRO A 49 ALA A 50 SITE 2 AC2 32 LEU A 82 GLU A 83 ARG A 84 GLN A 85 SITE 3 AC2 32 TRP A 90 HIS A 91 MET A 94 MET A 101 SITE 4 AC2 32 GLN A 102 ILE A 103 GLU A 166 GLU A 167 SITE 5 AC2 32 VAL A 168 ALA A 209 ILE A 210 GLY A 211 SITE 6 AC2 32 TYR A 407 ARG A 409 SER A 466 LEU A 467 SITE 7 AC2 32 LEU A 468 NAP A1505 HOH A2011 HOH A2021 SITE 8 AC2 32 HOH A2027 HOH A2084 HOH A2151 HOH A2174 SITE 1 AC3 23 LYS A 100 GLN A 102 ARG A 144 PRO A 217 SITE 2 AC3 23 SER A 254 GLY A 255 GLN A 256 SER A 257 SITE 3 AC3 23 GLU A 260 ARG A 279 ASN A 323 SER A 325 SITE 4 AC3 23 ALA A 404 THR A 405 GLY A 406 LYS A1503 SITE 5 AC3 23 FAD A1504 HOH A2095 HOH A2100 HOH A2101 SITE 6 AC3 23 HOH A2108 HOH A2110 HOH A2133 SITE 1 AC4 4 THR A 139 LEU A 141 ARG A 328 HOH A2062 SITE 1 AC5 7 PHE A 291 GLU A 294 TYR A 336 MET A 339 SITE 2 AC5 7 TYR A 340 ARG A 343 TRP A 352 SITE 1 AC6 4 GLY A 129 ARG A 130 LEU A 131 ILE A 132 SITE 1 AC7 6 LYS A 128 ASP A 149 ARG A 152 TRP A 153 SITE 2 AC7 6 GLN A 156 PRO A 178 SITE 1 AC8 5 ARG A 364 GLU A 366 HIS A 367 HIS A 368 SITE 2 AC8 5 GLY A 369 SITE 1 AC9 3 LEU A 239 LYS A 241 TYR A 247 SITE 1 BC1 6 CYS A 80 SER A 159 ASP A 160 VAL A 162 SITE 2 BC1 6 ARG A 201 HOH A2071 SITE 1 BC2 6 GLN A 420 ARG A 423 PRO A 424 GLY A 426 SITE 2 BC2 6 GLN A 427 ASP A 428 SITE 1 BC3 5 PRO A 142 ALA A 143 GLU A 146 ASN A 337 SITE 2 BC3 5 HOH A2063 CRYST1 77.620 84.748 145.534 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006871 0.00000