HEADER OXIDOREDUCTASE 09-AUG-12 4B65 TITLE A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), REDUCED STATE BOUND TO TITLE 2 NADP(H) COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ORNITHINE N5 MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-ORNITHINE N5-OXYGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS OXIDOREDUCTASE, SIDEROPHORE, FLAVIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FRANCESCHINI,M.FEDKENHEUER,N.J.VOGELAAR,H.H.ROBINSON,P.SOBRADO, AUTHOR 2 A.MATTEVI REVDAT 3 20-DEC-23 4B65 1 REMARK REVDAT 2 08-MAY-19 4B65 1 REMARK REVDAT 1 03-OCT-12 4B65 0 JRNL AUTH S.FRANCESCHINI,M.FEDKENHEUER,N.J.VOGELAAR,H.H.ROBINSON, JRNL AUTH 2 P.SOBRADO,A.MATTEVI JRNL TITL STRUCTURAL INSIGHT INTO THE MECHANISM OF OXYGEN ACTIVATION JRNL TITL 2 AND SUBSTRATE SELECTIVITY OF FLAVIN-DEPENDENT JRNL TITL 3 N-HYDROXYLATING MONOOXYGENASES. JRNL REF BIOCHEMISTRY V. 51 7043 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22928747 JRNL DOI 10.1021/BI301072W REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1074 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.447 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3843 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5235 ; 1.109 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 5.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;35.878 ;23.295 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;15.342 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2891 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 213 REMARK 3 RESIDUE RANGE : A 408 A 455 REMARK 3 RESIDUE RANGE : A 464 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2550 -30.3390 30.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.0142 T22: 0.0571 REMARK 3 T33: 0.2924 T12: -0.0084 REMARK 3 T13: 0.0180 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.7734 L22: 1.0015 REMARK 3 L33: 1.0570 L12: 0.0764 REMARK 3 L13: 1.4025 L23: 0.1026 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: -0.0493 S13: 0.0619 REMARK 3 S21: 0.0975 S22: 0.0140 S23: -0.0483 REMARK 3 S31: -0.0386 S32: 0.0925 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 284 REMARK 3 RESIDUE RANGE : A 324 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7250 -19.1510 -2.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0176 REMARK 3 T33: 0.3370 T12: -0.0152 REMARK 3 T13: 0.0330 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.3083 L22: 1.1736 REMARK 3 L33: 2.4312 L12: 0.5324 REMARK 3 L13: 0.7945 L23: 0.4019 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: 0.0641 S13: 0.1775 REMARK 3 S21: 0.0539 S22: 0.0122 S23: -0.0235 REMARK 3 S31: -0.3645 S32: 0.1204 S33: 0.0470 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 323 REMARK 3 RESIDUE RANGE : A 457 A 463 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7870 -44.5540 14.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.1320 REMARK 3 T33: 0.4125 T12: 0.0646 REMARK 3 T13: 0.0040 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4415 L22: 0.4082 REMARK 3 L33: 5.7626 L12: 0.4199 REMARK 3 L13: 1.5584 L23: 1.4345 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.1290 S13: -0.0005 REMARK 3 S21: 0.0064 S22: 0.0805 S23: 0.0043 REMARK 3 S31: 0.2287 S32: 0.5942 S33: -0.0959 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. REMARK 4 REMARK 4 4B65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B63 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION METHOD, REMARK 280 WITH A RESERVOIR SOLUTION CONTAINING; 1.6 M AMMONIUM SULFATE, REMARK 280 0.1 M HEPES, 2% DIOXANE, PH 6.6., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.99500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.81000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.99500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.81000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.99500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.23000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.81000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.99500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.23000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -218.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -84.46000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -77.99000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -84.46000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -77.99000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2045 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 TYR A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 MET A 15 REMARK 465 ARG A 16 REMARK 465 ASN A 17 REMARK 465 MET A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 GLN A 22 REMARK 465 ARG A 23 REMARK 465 LEU A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 ASP A 27 REMARK 465 PRO A 28 REMARK 465 SER A 385 REMARK 465 GLU A 386 REMARK 465 GLY A 387 REMARK 465 ALA A 388 REMARK 465 ALA A 389 REMARK 465 ASN A 390 REMARK 465 ASP A 391 REMARK 465 VAL A 492 REMARK 465 GLN A 493 REMARK 465 GLY A 494 REMARK 465 HIS A 495 REMARK 465 GLN A 496 REMARK 465 LEU A 497 REMARK 465 ARG A 498 REMARK 465 ALA A 499 REMARK 465 MET A 500 REMARK 465 LEU A 501 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 32 NE CZ NH1 NH2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 100 CE NZ REMARK 470 ARG A 191 NE CZ NH1 NH2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 245 CE NZ REMARK 470 LYS A 267 CD CE NZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 ARG A 314 NE CZ NH1 NH2 REMARK 470 LYS A 379 CD CE NZ REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 LYS A 393 CD CE NZ REMARK 470 ARG A 414 CD NE CZ NH1 NH2 REMARK 470 GLU A 448 CG CD OE1 OE2 REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 GLN A 486 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 195 OE2 GLU A 197 1.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 368 CG HIS A 368 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 108 -158.63 -82.53 REMARK 500 SER A 254 22.63 -147.23 REMARK 500 ASN A 323 -37.84 -140.42 REMARK 500 HIS A 367 25.03 -140.02 REMARK 500 LYS A 393 -165.56 -127.63 REMARK 500 TYR A 436 -5.56 83.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 43 10.81 REMARK 500 LEU A 43 11.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2049 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1496 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1497 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1498 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B63 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND REMARK 900 ORNITHINE REMARK 900 RELATED ID: 4B64 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND LYSINE REMARK 900 RELATED ID: 4B66 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), REDUCED STATE BOUND TO REMARK 900 NADP AND ARG REMARK 900 RELATED ID: 4B67 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND REMARK 900 TO NADP AND ORNITHINE REMARK 900 RELATED ID: 4B68 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND REMARK 900 TO NADP AND ARG REMARK 900 RELATED ID: 4B69 RELATED DB: PDB REMARK 900 A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO ORNITHINE DBREF 4B65 A 1 501 UNP Q5SE95 Q5SE95_ASPFM 1 501 SEQRES 1 A 501 MET GLU SER VAL GLU ARG LYS SER GLU SER SER TYR LEU SEQRES 2 A 501 GLY MET ARG ASN MET GLN PRO GLU GLN ARG LEU SER LEU SEQRES 3 A 501 ASP PRO PRO ARG LEU ARG SER THR PRO GLN ASP GLU LEU SEQRES 4 A 501 HIS ASP LEU LEU CYS VAL GLY PHE GLY PRO ALA SER LEU SEQRES 5 A 501 ALA ILE ALA ILE ALA LEU HIS ASP ALA LEU ASP PRO ARG SEQRES 6 A 501 LEU ASN LYS SER ALA SER ASN ILE HIS ALA GLN PRO LYS SEQRES 7 A 501 ILE CYS PHE LEU GLU ARG GLN LYS GLN PHE ALA TRP HIS SEQRES 8 A 501 SER GLY MET LEU VAL PRO GLY SER LYS MET GLN ILE SER SEQRES 9 A 501 PHE ILE LYS ASP LEU ALA THR LEU ARG ASP PRO ARG SER SEQRES 10 A 501 SER PHE THR PHE LEU ASN TYR LEU HIS GLN LYS GLY ARG SEQRES 11 A 501 LEU ILE HIS PHE THR ASN LEU SER THR PHE LEU PRO ALA SEQRES 12 A 501 ARG LEU GLU PHE GLU ASP TYR MET ARG TRP CYS ALA GLN SEQRES 13 A 501 GLN PHE SER ASP VAL VAL ALA TYR GLY GLU GLU VAL VAL SEQRES 14 A 501 GLU VAL ILE PRO GLY LYS SER ASP PRO SER SER SER VAL SEQRES 15 A 501 VAL ASP PHE PHE THR VAL ARG SER ARG ASN VAL GLU THR SEQRES 16 A 501 GLY GLU ILE SER ALA ARG ARG THR ARG LYS VAL VAL ILE SEQRES 17 A 501 ALA ILE GLY GLY THR ALA LYS MET PRO SER GLY LEU PRO SEQRES 18 A 501 GLN ASP PRO ARG ILE ILE HIS SER SER LYS TYR CYS THR SEQRES 19 A 501 THR LEU PRO ALA LEU LEU LYS ASP LYS SER LYS PRO TYR SEQRES 20 A 501 ASN ILE ALA VAL LEU GLY SER GLY GLN SER ALA ALA GLU SEQRES 21 A 501 ILE PHE HIS ASP LEU GLN LYS ARG TYR PRO ASN SER ARG SEQRES 22 A 501 THR THR LEU ILE MET ARG ASP SER ALA MET ARG PRO SER SEQRES 23 A 501 ASP ASP SER PRO PHE VAL ASN GLU ILE PHE ASN PRO GLU SEQRES 24 A 501 ARG VAL ASP LYS PHE TYR SER GLN SER ALA ALA GLU ARG SEQRES 25 A 501 GLN ARG SER LEU LEU ALA ASP LYS ALA THR ASN TYR SER SEQRES 26 A 501 VAL VAL ARG LEU GLU LEU ILE GLU GLU ILE TYR ASN ASP SEQRES 27 A 501 MET TYR LEU GLN ARG VAL LYS ASN PRO ASP GLU THR GLN SEQRES 28 A 501 TRP GLN HIS ARG ILE LEU PRO GLU ARG LYS ILE THR ARG SEQRES 29 A 501 VAL GLU HIS HIS GLY PRO GLN SER ARG MET ARG ILE HIS SEQRES 30 A 501 LEU LYS SER SER LYS PRO GLU SER GLU GLY ALA ALA ASN SEQRES 31 A 501 ASP VAL LYS GLU THR LEU GLU VAL ASP ALA LEU MET VAL SEQRES 32 A 501 ALA THR GLY TYR ASN ARG ASN ALA HIS GLU ARG LEU LEU SEQRES 33 A 501 SER LYS VAL GLN HIS LEU ARG PRO THR GLY GLN ASP GLN SEQRES 34 A 501 TRP LYS PRO HIS ARG ASP TYR ARG VAL GLU MET ASP PRO SEQRES 35 A 501 SER LYS VAL SER SER GLU ALA GLY ILE TRP LEU GLN GLY SEQRES 36 A 501 CYS ASN GLU ARG THR HIS GLY LEU SER ASP SER LEU LEU SEQRES 37 A 501 SER VAL LEU ALA VAL ARG GLY GLY GLU MET VAL GLN SER SEQRES 38 A 501 ILE PHE GLY GLU GLN LEU GLU ARG ALA ALA VAL GLN GLY SEQRES 39 A 501 HIS GLN LEU ARG ALA MET LEU HET FAD A1492 53 HET NDP A1493 48 HET SO4 A1494 5 HET GOL A1495 6 HET GOL A1496 6 HET GOL A1497 6 HET GOL A1498 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NDP C21 H30 N7 O17 P3 FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *194(H2 O) HELIX 1 1 GLY A 48 LEU A 62 1 15 HELIX 2 2 ASN A 67 ILE A 73 5 7 HELIX 3 3 HIS A 91 LEU A 95 5 5 HELIX 4 4 THR A 120 LYS A 128 1 9 HELIX 5 5 ARG A 130 ASN A 136 1 7 HELIX 6 6 ALA A 143 GLN A 157 1 15 HELIX 7 7 PHE A 158 ASP A 160 5 3 HELIX 8 8 LYS A 231 LEU A 240 1 10 HELIX 9 9 GLY A 255 TYR A 269 1 15 HELIX 10 10 PHE A 291 PRO A 298 5 8 HELIX 11 11 GLU A 299 GLN A 307 1 9 HELIX 12 12 SER A 308 ASP A 319 1 12 HELIX 13 13 LYS A 320 ASN A 323 5 4 HELIX 14 14 ARG A 328 ASN A 346 1 19 HELIX 15 15 ASP A 348 TRP A 352 5 5 HELIX 16 16 ALA A 411 LEU A 416 1 6 HELIX 17 17 SER A 417 ARG A 423 5 7 HELIX 18 18 ASN A 457 GLY A 462 1 6 HELIX 19 19 LEU A 463 LEU A 467 5 5 HELIX 20 20 VAL A 470 ALA A 491 1 22 SHEET 1 AA 5 VAL A 162 ALA A 163 0 SHEET 2 AA 5 ILE A 79 LEU A 82 1 O PHE A 81 N ALA A 163 SHEET 3 AA 5 HIS A 40 VAL A 45 1 O LEU A 42 N CYS A 80 SHEET 4 AA 5 ILE A 198 ILE A 208 1 O ARG A 202 N HIS A 40 SHEET 5 AA 5 GLY A 450 LEU A 453 -1 O GLY A 450 N VAL A 206 SHEET 1 AB 6 VAL A 162 ALA A 163 0 SHEET 2 AB 6 ILE A 79 LEU A 82 1 O PHE A 81 N ALA A 163 SHEET 3 AB 6 HIS A 40 VAL A 45 1 O LEU A 42 N CYS A 80 SHEET 4 AB 6 ILE A 198 ILE A 208 1 O ARG A 202 N HIS A 40 SHEET 5 AB 6 PHE A 185 ASN A 192 -1 O PHE A 186 N THR A 203 SHEET 6 AB 6 GLU A 166 GLY A 174 -1 O GLU A 167 N ARG A 191 SHEET 1 AC 2 GLY A 450 LEU A 453 0 SHEET 2 AC 2 ILE A 198 ILE A 208 -1 O ARG A 204 N GLY A 450 SHEET 1 AD 2 THR A 213 ALA A 214 0 SHEET 2 AD 2 TYR A 407 ASN A 408 -1 O ASN A 408 N THR A 213 SHEET 1 AE 5 ILE A 226 HIS A 228 0 SHEET 2 AE 5 ALA A 400 VAL A 403 1 O LEU A 401 N ILE A 227 SHEET 3 AE 5 ASN A 248 LEU A 252 1 O ALA A 250 N MET A 402 SHEET 4 AE 5 ARG A 273 ILE A 277 1 O ARG A 273 N ILE A 249 SHEET 5 AE 5 HIS A 354 LEU A 357 1 O ARG A 355 N LEU A 276 SHEET 1 AF 3 ARG A 360 GLU A 366 0 SHEET 2 AF 3 MET A 374 SER A 380 -1 O ARG A 375 N GLU A 366 SHEET 3 AF 3 THR A 395 VAL A 398 -1 O LEU A 396 N ILE A 376 SITE 1 AC1 32 GLY A 46 GLY A 48 PRO A 49 ALA A 50 SITE 2 AC1 32 LEU A 82 GLU A 83 ARG A 84 GLN A 85 SITE 3 AC1 32 TRP A 90 HIS A 91 MET A 94 MET A 101 SITE 4 AC1 32 GLN A 102 ILE A 103 ARG A 144 GLU A 166 SITE 5 AC1 32 GLU A 167 VAL A 168 ALA A 209 ILE A 210 SITE 6 AC1 32 GLY A 211 TYR A 407 SER A 466 LEU A 467 SITE 7 AC1 32 LEU A 468 NDP A1493 GOL A1496 HOH A2007 SITE 8 AC1 32 HOH A2021 HOH A2077 HOH A2182 HOH A2189 SITE 1 AC2 28 SER A 99 LYS A 100 GLN A 102 ARG A 144 SITE 2 AC2 28 LYS A 215 PRO A 217 SER A 254 GLY A 255 SITE 3 AC2 28 GLN A 256 SER A 257 GLU A 260 ARG A 279 SITE 4 AC2 28 ASN A 323 SER A 325 ALA A 404 THR A 405 SITE 5 AC2 28 GLY A 406 TYR A 407 FAD A1492 GOL A1495 SITE 6 AC2 28 HOH A2089 HOH A2100 HOH A2101 HOH A2102 SITE 7 AC2 28 HOH A2110 HOH A2135 HOH A2137 HOH A2161 SITE 1 AC3 6 LEU A 125 HIS A 126 GLY A 129 ARG A 130 SITE 2 AC3 6 LEU A 131 ILE A 132 SITE 1 AC4 4 SER A 218 ARG A 279 NDP A1493 HOH A2111 SITE 1 AC5 5 HIS A 91 GLY A 212 TYR A 407 ARG A 409 SITE 2 AC5 5 FAD A1492 SITE 1 AC6 7 PHE A 291 GLU A 294 TYR A 336 MET A 339 SITE 2 AC6 7 TYR A 340 ARG A 343 HOH A2141 SITE 1 AC7 5 VAL A 365 GLU A 366 HIS A 367 HIS A 368 SITE 2 AC7 5 GLY A 369 CRYST1 77.990 84.460 145.620 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012822 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006867 0.00000