HEADER RECEPTOR 24-AUG-12 4B7W TITLE LIGAND BINDING DOMAIN HUMAN HEPATOCYTE NUCLEAR FACTOR 4ALPHA: APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 4-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, RESIDUES 142-377; COMPND 5 SYNONYM: HNF-4-ALPHA, NUCLEAR RECEPTOR SUBFAMILY 2 GROUP A MEMBER 1, COMPND 6 TRANSCRIPTION FACTOR 14, TCF-14, TRANSCRIPTION FACTOR HNF-4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETM11 KEYWDS RECEPTOR, NUCLEAR RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR Z.DUDASOVA,M.OKVIST,M.KRETOVA,G.ONDROVICOVA,R.SKRABANA,R.LEGUEVEL, AUTHOR 2 G.SALBERT,G.LEONARD,S.MCSWEENEY,P.BARATH REVDAT 2 20-DEC-23 4B7W 1 REMARK REVDAT 1 11-SEP-13 4B7W 0 JRNL AUTH Z.DUDASOVA,M.OKVIST,M.KRETOVA,G.ONDROVICOVA,R.SKRABANA, JRNL AUTH 2 R.LEGUEVEL,G.SALBERT,G.LEONARD,S.MCSWEENEY,P.BARATH JRNL TITL FATTY ACIDS ARE NOT ESSENTIAL STRUCTURAL COMPONENTS OF JRNL TITL 2 HEPATOCYTE NUCLEAR FACTOR 4ALPHA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 7987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 374 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 620 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 35 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6476 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -40.40600 REMARK 3 B22 (A**2) : -10.37600 REMARK 3 B33 (A**2) : 50.78100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.002 REMARK 3 BOND ANGLES (DEGREES) : 0.655 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 111.4 REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE REFINEMENT WAS CARRIED OUT REMARK 3 USING THE CNS-DEN METHODOLOGY. SEE SCHRODER, G. F., LEVITT, M. & REMARK 3 BRUNGER, A. T. 2010. SUPER-RESOLUTION BIOMOLECULAR REMARK 3 CRYSTALLOGRAPHY WITH LOW-RESOLUTION DATA. NATURE 464, 1218-1222. REMARK 4 REMARK 4 4B7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8011 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LV2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE, 10 MM DTT, 16% MPD IN 0.1 M TRIS, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.52400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.64100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.52400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.64100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 139 REMARK 465 ALA A 140 REMARK 465 MET A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 TYR A 144 REMARK 465 GLU A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 SER A 148 REMARK 465 LEU A 149 REMARK 465 PRO A 150 REMARK 465 SER A 151 REMARK 465 ILE A 152 REMARK 465 ASN A 153 REMARK 465 ALA A 154 REMARK 465 LEU A 155 REMARK 465 LEU A 156 REMARK 465 GLN A 157 REMARK 465 ALA A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 LEU A 161 REMARK 465 SER A 162 REMARK 465 ARG A 163 REMARK 465 GLN A 164 REMARK 465 ILE A 165 REMARK 465 THR A 166 REMARK 465 SER A 167 REMARK 465 PRO A 168 REMARK 465 VAL A 169 REMARK 465 SER A 170 REMARK 465 GLY A 171 REMARK 465 ILE A 172 REMARK 465 ASN A 173 REMARK 465 GLY A 174 REMARK 465 GLY A 377 REMARK 465 GLY B 139 REMARK 465 ALA B 140 REMARK 465 MET B 141 REMARK 465 SER B 142 REMARK 465 SER B 143 REMARK 465 TYR B 144 REMARK 465 GLU B 145 REMARK 465 ASP B 146 REMARK 465 SER B 147 REMARK 465 SER B 148 REMARK 465 LEU B 149 REMARK 465 PRO B 150 REMARK 465 SER B 151 REMARK 465 ILE B 152 REMARK 465 ASN B 153 REMARK 465 ALA B 154 REMARK 465 LEU B 155 REMARK 465 LEU B 156 REMARK 465 GLN B 157 REMARK 465 ALA B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 LEU B 161 REMARK 465 SER B 162 REMARK 465 ARG B 163 REMARK 465 GLN B 164 REMARK 465 ILE B 165 REMARK 465 THR B 166 REMARK 465 SER B 167 REMARK 465 PRO B 168 REMARK 465 VAL B 169 REMARK 465 SER B 170 REMARK 465 GLY B 171 REMARK 465 ILE B 172 REMARK 465 ASN B 173 REMARK 465 GLY B 174 REMARK 465 ASP B 175 REMARK 465 ILE B 176 REMARK 465 GLY B 377 REMARK 465 GLY C 139 REMARK 465 ALA C 140 REMARK 465 MET C 141 REMARK 465 SER C 142 REMARK 465 SER C 143 REMARK 465 TYR C 144 REMARK 465 GLU C 145 REMARK 465 ASP C 146 REMARK 465 SER C 147 REMARK 465 SER C 148 REMARK 465 LEU C 149 REMARK 465 PRO C 150 REMARK 465 SER C 151 REMARK 465 ILE C 152 REMARK 465 ASN C 153 REMARK 465 ALA C 154 REMARK 465 LEU C 155 REMARK 465 LEU C 156 REMARK 465 GLN C 157 REMARK 465 ALA C 158 REMARK 465 GLU C 159 REMARK 465 VAL C 160 REMARK 465 LEU C 161 REMARK 465 SER C 162 REMARK 465 ARG C 163 REMARK 465 GLN C 164 REMARK 465 ILE C 165 REMARK 465 THR C 166 REMARK 465 SER C 167 REMARK 465 PRO C 168 REMARK 465 VAL C 169 REMARK 465 SER C 170 REMARK 465 GLY C 171 REMARK 465 ILE C 172 REMARK 465 ASN C 173 REMARK 465 GLY C 174 REMARK 465 GLY C 377 REMARK 465 GLY D 139 REMARK 465 ALA D 140 REMARK 465 MET D 141 REMARK 465 SER D 142 REMARK 465 SER D 143 REMARK 465 TYR D 144 REMARK 465 GLU D 145 REMARK 465 ASP D 146 REMARK 465 SER D 147 REMARK 465 SER D 148 REMARK 465 LEU D 149 REMARK 465 PRO D 150 REMARK 465 SER D 151 REMARK 465 ILE D 152 REMARK 465 ASN D 153 REMARK 465 ALA D 154 REMARK 465 LEU D 155 REMARK 465 LEU D 156 REMARK 465 GLN D 157 REMARK 465 ALA D 158 REMARK 465 GLU D 159 REMARK 465 VAL D 160 REMARK 465 LEU D 161 REMARK 465 SER D 162 REMARK 465 ARG D 163 REMARK 465 GLN D 164 REMARK 465 ILE D 165 REMARK 465 THR D 166 REMARK 465 SER D 167 REMARK 465 PRO D 168 REMARK 465 VAL D 169 REMARK 465 SER D 170 REMARK 465 GLY D 171 REMARK 465 ILE D 172 REMARK 465 ASN D 173 REMARK 465 GLY D 174 REMARK 465 ASP D 175 REMARK 465 ILE D 176 REMARK 465 GLY D 377 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 176 -10.38 -143.27 REMARK 500 ARG A 177 -72.68 -112.46 REMARK 500 LYS A 180 -178.78 59.80 REMARK 500 ALA A 222 -78.24 -95.98 REMARK 500 ASN A 247 59.76 -162.04 REMARK 500 ASP A 248 -148.92 60.43 REMARK 500 TYR A 249 86.86 56.41 REMARK 500 PRO A 252 164.38 -49.27 REMARK 500 GLU A 257 28.03 -79.21 REMARK 500 LEU A 258 55.97 -159.77 REMARK 500 GLU A 260 -13.70 67.26 REMARK 500 LEU A 272 -52.73 -136.05 REMARK 500 ARG A 326 53.91 -169.70 REMARK 500 GLN A 327 179.74 61.08 REMARK 500 TYR A 328 -177.37 59.56 REMARK 500 MET A 373 -44.77 -141.25 REMARK 500 LYS B 179 -14.07 65.06 REMARK 500 LYS B 180 142.83 65.26 REMARK 500 SER B 236 19.20 -150.78 REMARK 500 ASP B 248 -140.75 62.61 REMARK 500 TYR B 249 83.08 54.33 REMARK 500 PRO B 252 159.93 -45.26 REMARK 500 GLU B 257 22.36 -70.62 REMARK 500 LEU B 258 36.56 -150.78 REMARK 500 GLU B 260 18.00 56.05 REMARK 500 MET B 261 -11.90 -156.53 REMARK 500 LEU B 272 -59.89 -144.48 REMARK 500 GLN B 280 70.79 50.94 REMARK 500 ASP B 282 -160.01 -77.53 REMARK 500 ASP B 329 179.59 59.26 REMARK 500 SER B 330 7.74 -175.83 REMARK 500 MET B 363 -78.73 -48.45 REMARK 500 ILE C 176 -10.07 -143.61 REMARK 500 ARG C 177 -72.43 -112.74 REMARK 500 LYS C 180 -179.13 58.95 REMARK 500 ALA C 222 -78.53 -95.77 REMARK 500 ASN C 247 59.60 -162.44 REMARK 500 ASP C 248 -149.05 60.65 REMARK 500 TYR C 249 86.53 56.53 REMARK 500 PRO C 252 164.73 -49.24 REMARK 500 GLU C 257 28.19 -79.16 REMARK 500 LEU C 258 55.95 -159.82 REMARK 500 GLU C 260 -13.79 67.03 REMARK 500 LEU C 272 -52.84 -136.11 REMARK 500 ARG C 326 53.69 -169.64 REMARK 500 GLN C 327 179.59 61.16 REMARK 500 TYR C 328 -177.25 59.82 REMARK 500 MET C 373 -44.65 -141.28 REMARK 500 LYS D 179 -14.15 64.84 REMARK 500 LYS D 180 143.00 65.76 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HNF4A LBD IN COMPLEX WITH THE LIGANDAND THE REMARK 900 COACTIVATOR SRC-1 PEPTIDE DBREF 4B7W A 142 377 UNP P41235 HNF4A_HUMAN 142 377 DBREF 4B7W B 142 377 UNP P41235 HNF4A_HUMAN 142 377 DBREF 4B7W C 142 377 UNP P41235 HNF4A_HUMAN 142 377 DBREF 4B7W D 142 377 UNP P41235 HNF4A_HUMAN 142 377 SEQADV 4B7W GLY A 139 UNP P41235 EXPRESSION TAG SEQADV 4B7W ALA A 140 UNP P41235 EXPRESSION TAG SEQADV 4B7W MET A 141 UNP P41235 EXPRESSION TAG SEQADV 4B7W GLY B 139 UNP P41235 EXPRESSION TAG SEQADV 4B7W ALA B 140 UNP P41235 EXPRESSION TAG SEQADV 4B7W MET B 141 UNP P41235 EXPRESSION TAG SEQADV 4B7W GLY C 139 UNP P41235 EXPRESSION TAG SEQADV 4B7W ALA C 140 UNP P41235 EXPRESSION TAG SEQADV 4B7W MET C 141 UNP P41235 EXPRESSION TAG SEQADV 4B7W GLY D 139 UNP P41235 EXPRESSION TAG SEQADV 4B7W ALA D 140 UNP P41235 EXPRESSION TAG SEQADV 4B7W MET D 141 UNP P41235 EXPRESSION TAG SEQRES 1 A 239 GLY ALA MET SER SER TYR GLU ASP SER SER LEU PRO SER SEQRES 2 A 239 ILE ASN ALA LEU LEU GLN ALA GLU VAL LEU SER ARG GLN SEQRES 3 A 239 ILE THR SER PRO VAL SER GLY ILE ASN GLY ASP ILE ARG SEQRES 4 A 239 ALA LYS LYS ILE ALA SER ILE ALA ASP VAL CYS GLU SER SEQRES 5 A 239 MET LYS GLU GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS SEQRES 6 A 239 TYR ILE PRO ALA PHE CYS GLU LEU PRO LEU ASP ASP GLN SEQRES 7 A 239 VAL ALA LEU LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU SEQRES 8 A 239 LEU GLY ALA THR LYS ARG SER MET VAL PHE LYS ASP VAL SEQRES 9 A 239 LEU LEU LEU GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS SEQRES 10 A 239 PRO GLU LEU ALA GLU MET SER ARG VAL SER ILE ARG ILE SEQRES 11 A 239 LEU ASP GLU LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE SEQRES 12 A 239 ASP ASP ASN GLU TYR ALA TYR LEU LYS ALA ILE ILE PHE SEQRES 13 A 239 PHE ASP PRO ASP ALA LYS GLY LEU SER ASP PRO GLY LYS SEQRES 14 A 239 ILE LYS ARG LEU ARG SER GLN VAL GLN VAL SER LEU GLU SEQRES 15 A 239 ASP TYR ILE ASN ASP ARG GLN TYR ASP SER ARG GLY ARG SEQRES 16 A 239 PHE GLY GLU LEU LEU LEU LEU LEU PRO THR LEU GLN SER SEQRES 17 A 239 ILE THR TRP GLN MET ILE GLU GLN ILE GLN PHE ILE LYS SEQRES 18 A 239 LEU PHE GLY MET ALA LYS ILE ASP ASN LEU LEU GLN GLU SEQRES 19 A 239 MET LEU LEU GLY GLY SEQRES 1 B 239 GLY ALA MET SER SER TYR GLU ASP SER SER LEU PRO SER SEQRES 2 B 239 ILE ASN ALA LEU LEU GLN ALA GLU VAL LEU SER ARG GLN SEQRES 3 B 239 ILE THR SER PRO VAL SER GLY ILE ASN GLY ASP ILE ARG SEQRES 4 B 239 ALA LYS LYS ILE ALA SER ILE ALA ASP VAL CYS GLU SER SEQRES 5 B 239 MET LYS GLU GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS SEQRES 6 B 239 TYR ILE PRO ALA PHE CYS GLU LEU PRO LEU ASP ASP GLN SEQRES 7 B 239 VAL ALA LEU LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU SEQRES 8 B 239 LEU GLY ALA THR LYS ARG SER MET VAL PHE LYS ASP VAL SEQRES 9 B 239 LEU LEU LEU GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS SEQRES 10 B 239 PRO GLU LEU ALA GLU MET SER ARG VAL SER ILE ARG ILE SEQRES 11 B 239 LEU ASP GLU LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE SEQRES 12 B 239 ASP ASP ASN GLU TYR ALA TYR LEU LYS ALA ILE ILE PHE SEQRES 13 B 239 PHE ASP PRO ASP ALA LYS GLY LEU SER ASP PRO GLY LYS SEQRES 14 B 239 ILE LYS ARG LEU ARG SER GLN VAL GLN VAL SER LEU GLU SEQRES 15 B 239 ASP TYR ILE ASN ASP ARG GLN TYR ASP SER ARG GLY ARG SEQRES 16 B 239 PHE GLY GLU LEU LEU LEU LEU LEU PRO THR LEU GLN SER SEQRES 17 B 239 ILE THR TRP GLN MET ILE GLU GLN ILE GLN PHE ILE LYS SEQRES 18 B 239 LEU PHE GLY MET ALA LYS ILE ASP ASN LEU LEU GLN GLU SEQRES 19 B 239 MET LEU LEU GLY GLY SEQRES 1 C 239 GLY ALA MET SER SER TYR GLU ASP SER SER LEU PRO SER SEQRES 2 C 239 ILE ASN ALA LEU LEU GLN ALA GLU VAL LEU SER ARG GLN SEQRES 3 C 239 ILE THR SER PRO VAL SER GLY ILE ASN GLY ASP ILE ARG SEQRES 4 C 239 ALA LYS LYS ILE ALA SER ILE ALA ASP VAL CYS GLU SER SEQRES 5 C 239 MET LYS GLU GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS SEQRES 6 C 239 TYR ILE PRO ALA PHE CYS GLU LEU PRO LEU ASP ASP GLN SEQRES 7 C 239 VAL ALA LEU LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU SEQRES 8 C 239 LEU GLY ALA THR LYS ARG SER MET VAL PHE LYS ASP VAL SEQRES 9 C 239 LEU LEU LEU GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS SEQRES 10 C 239 PRO GLU LEU ALA GLU MET SER ARG VAL SER ILE ARG ILE SEQRES 11 C 239 LEU ASP GLU LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE SEQRES 12 C 239 ASP ASP ASN GLU TYR ALA TYR LEU LYS ALA ILE ILE PHE SEQRES 13 C 239 PHE ASP PRO ASP ALA LYS GLY LEU SER ASP PRO GLY LYS SEQRES 14 C 239 ILE LYS ARG LEU ARG SER GLN VAL GLN VAL SER LEU GLU SEQRES 15 C 239 ASP TYR ILE ASN ASP ARG GLN TYR ASP SER ARG GLY ARG SEQRES 16 C 239 PHE GLY GLU LEU LEU LEU LEU LEU PRO THR LEU GLN SER SEQRES 17 C 239 ILE THR TRP GLN MET ILE GLU GLN ILE GLN PHE ILE LYS SEQRES 18 C 239 LEU PHE GLY MET ALA LYS ILE ASP ASN LEU LEU GLN GLU SEQRES 19 C 239 MET LEU LEU GLY GLY SEQRES 1 D 239 GLY ALA MET SER SER TYR GLU ASP SER SER LEU PRO SER SEQRES 2 D 239 ILE ASN ALA LEU LEU GLN ALA GLU VAL LEU SER ARG GLN SEQRES 3 D 239 ILE THR SER PRO VAL SER GLY ILE ASN GLY ASP ILE ARG SEQRES 4 D 239 ALA LYS LYS ILE ALA SER ILE ALA ASP VAL CYS GLU SER SEQRES 5 D 239 MET LYS GLU GLN LEU LEU VAL LEU VAL GLU TRP ALA LYS SEQRES 6 D 239 TYR ILE PRO ALA PHE CYS GLU LEU PRO LEU ASP ASP GLN SEQRES 7 D 239 VAL ALA LEU LEU ARG ALA HIS ALA GLY GLU HIS LEU LEU SEQRES 8 D 239 LEU GLY ALA THR LYS ARG SER MET VAL PHE LYS ASP VAL SEQRES 9 D 239 LEU LEU LEU GLY ASN ASP TYR ILE VAL PRO ARG HIS CYS SEQRES 10 D 239 PRO GLU LEU ALA GLU MET SER ARG VAL SER ILE ARG ILE SEQRES 11 D 239 LEU ASP GLU LEU VAL LEU PRO PHE GLN GLU LEU GLN ILE SEQRES 12 D 239 ASP ASP ASN GLU TYR ALA TYR LEU LYS ALA ILE ILE PHE SEQRES 13 D 239 PHE ASP PRO ASP ALA LYS GLY LEU SER ASP PRO GLY LYS SEQRES 14 D 239 ILE LYS ARG LEU ARG SER GLN VAL GLN VAL SER LEU GLU SEQRES 15 D 239 ASP TYR ILE ASN ASP ARG GLN TYR ASP SER ARG GLY ARG SEQRES 16 D 239 PHE GLY GLU LEU LEU LEU LEU LEU PRO THR LEU GLN SER SEQRES 17 D 239 ILE THR TRP GLN MET ILE GLU GLN ILE GLN PHE ILE LYS SEQRES 18 D 239 LEU PHE GLY MET ALA LYS ILE ASP ASN LEU LEU GLN GLU SEQRES 19 D 239 MET LEU LEU GLY GLY HELIX 1 1 ALA A 185 LEU A 198 1 14 HELIX 2 2 LEU A 198 LYS A 203 1 6 HELIX 3 3 ILE A 205 GLU A 210 1 6 HELIX 4 4 PRO A 212 VAL A 217 1 6 HELIX 5 5 HIS A 223 ARG A 235 1 13 HELIX 6 6 CYS A 255 ALA A 259 5 5 HELIX 7 7 MET A 261 LEU A 272 1 12 HELIX 8 8 LEU A 272 LEU A 279 1 8 HELIX 9 9 ASP A 282 ILE A 293 1 12 HELIX 10 10 ASP A 304 ASP A 325 1 22 HELIX 11 11 GLY A 332 LEU A 339 1 8 HELIX 12 12 LEU A 340 PHE A 361 1 22 HELIX 13 13 ASP A 367 GLU A 372 1 6 HELIX 14 14 SER B 183 GLN B 194 1 12 HELIX 15 15 LEU B 195 TYR B 204 1 10 HELIX 16 16 ILE B 205 GLU B 210 1 6 HELIX 17 17 PRO B 212 ARG B 221 1 10 HELIX 18 18 HIS B 223 ARG B 235 1 13 HELIX 19 19 CYS B 255 ALA B 259 5 5 HELIX 20 20 MET B 261 LEU B 272 1 12 HELIX 21 21 LEU B 272 GLN B 280 1 9 HELIX 22 22 ASP B 283 PHE B 295 1 13 HELIX 23 23 ASP B 304 ASN B 324 1 21 HELIX 24 24 PHE B 334 LEU B 339 1 6 HELIX 25 25 LEU B 340 LEU B 375 1 36 HELIX 26 26 ALA C 185 LEU C 198 1 14 HELIX 27 27 LEU C 198 LYS C 203 1 6 HELIX 28 28 ILE C 205 GLU C 210 1 6 HELIX 29 29 PRO C 212 VAL C 217 1 6 HELIX 30 30 HIS C 223 ARG C 235 1 13 HELIX 31 31 CYS C 255 ALA C 259 5 5 HELIX 32 32 MET C 261 LEU C 272 1 12 HELIX 33 33 LEU C 272 LEU C 279 1 8 HELIX 34 34 ASP C 282 ILE C 293 1 12 HELIX 35 35 ASP C 304 ASP C 325 1 22 HELIX 36 36 GLY C 332 LEU C 339 1 8 HELIX 37 37 LEU C 340 PHE C 361 1 22 HELIX 38 38 ASP C 367 GLU C 372 1 6 HELIX 39 39 SER D 183 GLN D 194 1 12 HELIX 40 40 LEU D 195 TYR D 204 1 10 HELIX 41 41 ILE D 205 GLU D 210 1 6 HELIX 42 42 PRO D 212 ARG D 221 1 10 HELIX 43 43 HIS D 223 ARG D 235 1 13 HELIX 44 44 CYS D 255 ALA D 259 5 5 HELIX 45 45 MET D 261 LEU D 272 1 12 HELIX 46 46 LEU D 272 GLN D 280 1 9 HELIX 47 47 ASP D 283 PHE D 295 1 13 HELIX 48 48 ASP D 304 ASN D 324 1 21 HELIX 49 49 PHE D 334 LEU D 339 1 6 HELIX 50 50 LEU D 340 LEU D 375 1 36 SHEET 1 DA 2 LEU D 244 LEU D 245 0 SHEET 2 DA 2 ASP D 248 ILE D 250 -1 O ASP D 248 N LEU D 245 CRYST1 101.048 105.282 98.322 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010171 0.00000 MTRIX1 1 -0.265440 0.964130 -0.001020 0.16176 1 MTRIX2 1 0.964040 0.265430 0.012940 -0.84988 1 MTRIX3 1 0.012740 0.002450 -0.999920 52.36674 1 MTRIX1 2 -0.248810 0.968550 -0.002500 0.25932 1 MTRIX2 2 0.968200 0.248790 0.026350 -1.20403 1 MTRIX3 2 0.026140 0.004140 -0.999650 52.34188 1