HEADER TRANSCRIPTION/HYDROLASE 26-AUG-12 4B8A TITLE STRUCTURE OF YEAST NOT1 MIF4G DOMAIN CO-CRYSTALLIZED WITH CAF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MIF4G, RESIDUES 755-1000; COMPND 5 SYNONYM: CELL DIVISION CYCLE PROTEIN 39, NOT1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLY(A) RIBONUCLEASE POP2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: NUCLEASE DOMAIN, RESIDUES 151-433; COMPND 11 SYNONYM: CCR4-ASSOCIATED FACTOR 1; COMPND 12 EC: 3.1.13.4; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PEC_SUMO_HT_A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: PLYS STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PEC_SUMO_HT_A KEYWDS TRANSCRIPTION-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.BASQUIN,E.CONTI REVDAT 4 20-DEC-23 4B8A 1 ATOM REVDAT 3 20-APR-16 4B8A 1 ATOM TER HETATM MASTER REVDAT 2 13-AUG-14 4B8A 1 ATOM REVDAT 1 21-NOV-12 4B8A 0 JRNL AUTH J.BASQUIN,V.V.ROUDKO,M.RODE,C.BASQUIN,B.SERAPHIN,E.CONTI JRNL TITL ARCHITECTURE OF THE NUCLEASE MODULE OF THE YEAST CCR4-NOT JRNL TITL 2 COMPLEX: THE NOT1-CAF1-CCR4 INTERACTION. JRNL REF MOL.CELL V. 48 207 2012 JRNL REFN ISSN 1097-2765 JRNL PMID 22959269 JRNL DOI 10.1016/J.MOLCEL.2012.08.014 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.1584 - 5.1697 1.00 4337 230 0.2029 0.2324 REMARK 3 2 5.1697 - 4.1036 1.00 4355 224 0.1612 0.2080 REMARK 3 3 4.1036 - 3.5850 1.00 4332 231 0.1716 0.2183 REMARK 3 4 3.5850 - 3.2572 1.00 4334 237 0.1747 0.2205 REMARK 3 5 3.2572 - 3.0238 1.00 4382 230 0.1876 0.2215 REMARK 3 6 3.0238 - 2.8455 1.00 4321 226 0.1941 0.2374 REMARK 3 7 2.8455 - 2.7030 1.00 4380 230 0.2123 0.2736 REMARK 3 8 2.7030 - 2.5853 1.00 4300 226 0.2038 0.2954 REMARK 3 9 2.5853 - 2.4858 1.00 4347 228 0.2038 0.2532 REMARK 3 10 2.4858 - 2.4000 1.00 4347 230 0.2130 0.2902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 35.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.19430 REMARK 3 B22 (A**2) : -7.61850 REMARK 3 B33 (A**2) : 11.81280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3971 REMARK 3 ANGLE : 1.052 5388 REMARK 3 CHIRALITY : 0.072 610 REMARK 3 PLANARITY : 0.004 679 REMARK 3 DIHEDRAL : 13.899 1431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UOC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% (W/V) PEG 8000, 0.2 M NA MALONATE, REMARK 280 50 MM TRIS PH 8.0 AND 0.1% LOW MELTING AGAROSE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.95400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.95400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 762 REMARK 465 SER A 763 REMARK 465 MET A 764 REMARK 465 SER A 765 REMARK 465 ARG A 766 REMARK 465 PRO A 767 REMARK 465 VAL A 768 REMARK 465 THR A 1001 REMARK 465 PRO A 1002 REMARK 465 GLU A 1003 REMARK 465 VAL A 1004 REMARK 465 ILE A 1005 REMARK 465 GLU A 1006 REMARK 465 THR A 1007 REMARK 465 LEU A 1008 REMARK 465 SER A 1009 REMARK 465 GLY A 1010 REMARK 465 ARG B 4 REMARK 465 SER B 5 REMARK 465 PRO B 54 REMARK 465 ILE B 55 REMARK 465 GLY B 56 REMARK 465 THR B 57 REMARK 465 PHE B 58 REMARK 465 ARG B 59 REMARK 465 SER B 60 REMARK 465 GLU B 119 REMARK 465 LEU B 120 REMARK 465 LEU B 121 REMARK 465 ARG B 122 REMARK 465 LYS B 123 REMARK 465 SER B 124 REMARK 465 PRO B 213 REMARK 465 GLN B 214 REMARK 465 LEU B 215 REMARK 465 GLN B 216 REMARK 465 GLN B 217 REMARK 465 SER B 218 REMARK 465 SER B 219 REMARK 465 GLN B 220 REMARK 465 GLN B 221 REMARK 465 GLN B 222 REMARK 465 GLN B 223 REMARK 465 GLN B 224 REMARK 465 GLN B 225 REMARK 465 GLY B 284 REMARK 465 ILE B 285 REMARK 465 ASP B 286 REMARK 465 GLY B 287 REMARK 465 ASP B 288 REMARK 465 GLN B 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 769 CG CD OE1 NE2 REMARK 470 GLU A 770 CG CD OE1 OE2 REMARK 470 GLU A 781 CG CD OE1 OE2 REMARK 470 GLN A 785 CG CD OE1 NE2 REMARK 470 LYS A 793 CG CD CE NZ REMARK 470 LYS A 798 CG CD CE NZ REMARK 470 GLU A 967 CG CD OE1 OE2 REMARK 470 VAL B 48 CG1 CG2 REMARK 470 THR B 50 OG1 CG2 REMARK 470 LEU B 51 CG CD1 CD2 REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 HIS B 65 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 114 OG REMARK 470 THR B 115 OG1 CG2 REMARK 470 SER B 117 OG REMARK 470 LEU B 118 CG CD1 CD2 REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 TYR B 283 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG2 GLU A 882 HD12 ILE A 930 1.11 REMARK 500 HG1 THR A 976 O HOH A 2054 1.15 REMARK 500 HZ PHE B 75 HD12 ILE B 112 1.33 REMARK 500 HG1 THR A 823 OD1 ASN A 825 1.49 REMARK 500 OD2 ASP B 234 HH21 ARG B 240 1.50 REMARK 500 HE21 GLN B 143 O HOH A 2049 1.54 REMARK 500 HH22 ARG B 32 O HOH B 2012 1.55 REMARK 500 HH TYR B 25 OE1 GLU B 140 1.56 REMARK 500 OD1 ASN A 905 HG SER A 945 1.56 REMARK 500 O PHE B 244 HE21 GLN B 250 1.58 REMARK 500 HE22 GLN A 788 O PRO A 824 1.59 REMARK 500 O ILE B 173 O HOH B 2051 1.99 REMARK 500 O HOH B 2002 O HOH B 2005 1.99 REMARK 500 O GLN B 67 O HOH B 2033 2.06 REMARK 500 OG1 THR A 976 O HOH A 2054 2.09 REMARK 500 OH TYR B 161 O TYR B 227 2.13 REMARK 500 O HOH A 2055 O HOH A 2058 2.13 REMARK 500 O HOH B 2036 O HOH B 2058 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN A 787 HA2 GLY B 96 4545 1.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 780 -158.75 -102.37 REMARK 500 THR A 901 -85.12 -122.01 REMARK 500 VAL B 48 -71.43 -63.77 REMARK 500 PHE B 210 30.75 -87.28 REMARK 500 LYS B 211 45.06 -155.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UOC RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE YEAST POP2 PROTEIN REMARK 900 RELATED ID: 4B89 RELATED DB: PDB REMARK 900 MIF4G DOMAIN OF THE YEAST NOT1 REMARK 900 RELATED ID: 4B8B RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF THE YEAST NOT1 REMARK 900 RELATED ID: 4B8C RELATED DB: PDB REMARK 900 NUCLEASE MODULE OF THE YEAST CCR4-NOT COMPLEX DBREF 4B8A A 765 1010 UNP P25655 NOT1_YEAST 755 1000 DBREF 4B8A B 7 289 UNP P39008 POP2_YEAST 151 433 SEQADV 4B8A ARG A 762 UNP P25655 EXPRESSION TAG SEQADV 4B8A SER A 763 UNP P25655 EXPRESSION TAG SEQADV 4B8A MET A 764 UNP P25655 EXPRESSION TAG SEQADV 4B8A ARG B 4 UNP P39008 EXPRESSION TAG SEQADV 4B8A SER B 5 UNP P39008 EXPRESSION TAG SEQADV 4B8A MET B 6 UNP P39008 EXPRESSION TAG SEQRES 1 A 249 ARG SER MET SER ARG PRO VAL GLN GLU MET ILE PRO LEU SEQRES 2 A 249 LYS PHE PHE ALA VAL ASP GLU VAL SER CYS GLN ILE ASN SEQRES 3 A 249 GLN GLU GLY ALA PRO LYS ASP VAL VAL GLU LYS VAL LEU SEQRES 4 A 249 PHE VAL LEU ASN ASN VAL THR LEU ALA ASN LEU ASN ASN SEQRES 5 A 249 LYS VAL ASP GLU LEU LYS LYS SER LEU THR PRO ASN TYR SEQRES 6 A 249 PHE SER TRP PHE SER THR TYR LEU VAL THR GLN ARG ALA SEQRES 7 A 249 LYS THR GLU PRO ASN TYR HIS ASP LEU TYR SER LYS VAL SEQRES 8 A 249 ILE VAL ALA MET GLY SER GLY LEU LEU HIS GLN PHE MET SEQRES 9 A 249 VAL ASN VAL THR LEU ARG GLN LEU PHE VAL LEU LEU SER SEQRES 10 A 249 THR LYS ASP GLU GLN ALA ILE ASP LYS LYS HIS LEU LYS SEQRES 11 A 249 ASN LEU ALA SER TRP LEU GLY CYS ILE THR LEU ALA LEU SEQRES 12 A 249 ASN LYS PRO ILE LYS HIS LYS ASN ILE ALA PHE ARG GLU SEQRES 13 A 249 MET LEU ILE GLU ALA TYR LYS GLU ASN ARG LEU GLU ILE SEQRES 14 A 249 VAL VAL PRO PHE VAL THR LYS ILE LEU GLN ARG ALA SER SEQRES 15 A 249 GLU SER LYS ILE PHE LYS PRO PRO ASN PRO TRP THR VAL SEQRES 16 A 249 GLY ILE LEU LYS LEU LEU ILE GLU LEU ASN GLU LYS ALA SEQRES 17 A 249 ASN TRP LYS LEU SER LEU THR PHE GLU VAL GLU VAL LEU SEQRES 18 A 249 LEU LYS SER PHE ASN LEU THR THR LYS SER LEU LYS PRO SEQRES 19 A 249 SER ASN PHE ILE ASN THR PRO GLU VAL ILE GLU THR LEU SEQRES 20 A 249 SER GLY SEQRES 1 B 286 ARG SER MET PHE LEU PRO PRO PRO ASN TYR LEU PHE VAL SEQRES 2 B 286 ARG ASP VAL TRP LYS SER ASN LEU TYR SER GLU PHE ALA SEQRES 3 B 286 VAL ILE ARG GLN LEU VAL SER GLN TYR ASN HIS VAL SER SEQRES 4 B 286 ILE SER THR GLU PHE VAL GLY THR LEU ALA ARG PRO ILE SEQRES 5 B 286 GLY THR PHE ARG SER LYS VAL ASP TYR HIS TYR GLN THR SEQRES 6 B 286 MET ARG ALA ASN VAL ASP PHE LEU ASN PRO ILE GLN LEU SEQRES 7 B 286 GLY LEU SER LEU SER ASP ALA ASN GLY ASN LYS PRO ASP SEQRES 8 B 286 ASN GLY PRO SER THR TRP GLN PHE ASN PHE GLU PHE ASP SEQRES 9 B 286 PRO LYS LYS GLU ILE MET SER THR GLU SER LEU GLU LEU SEQRES 10 B 286 LEU ARG LYS SER GLY ILE ASN PHE GLU LYS HIS GLU ASN SEQRES 11 B 286 LEU GLY ILE ASP VAL PHE GLU PHE SER GLN LEU LEU MET SEQRES 12 B 286 ASP SER GLY LEU MET MET ASP ASP SER VAL THR TRP ILE SEQRES 13 B 286 THR TYR HIS ALA ALA TYR ASP LEU GLY PHE LEU ILE ASN SEQRES 14 B 286 ILE LEU MET ASN ASP SER MET PRO ASN ASN LYS GLU ASP SEQRES 15 B 286 PHE GLU TRP TRP VAL HIS GLN TYR MET PRO ASN PHE TYR SEQRES 16 B 286 ASP LEU ASN LEU VAL TYR LYS ILE ILE GLN GLU PHE LYS SEQRES 17 B 286 ASN PRO GLN LEU GLN GLN SER SER GLN GLN GLN GLN GLN SEQRES 18 B 286 GLN GLN TYR SER LEU THR THR LEU ALA ASP GLU LEU GLY SEQRES 19 B 286 LEU PRO ARG PHE SER ILE PHE THR THR THR GLY GLY GLN SEQRES 20 B 286 SER LEU LEU MET LEU LEU SER PHE CYS GLN LEU SER LYS SEQRES 21 B 286 LEU SER MET HIS LYS PHE PRO ASN GLY THR ASP PHE ALA SEQRES 22 B 286 LYS TYR GLN GLY VAL ILE TYR GLY ILE ASP GLY ASP GLN FORMUL 3 HOH *149(H2 O) HELIX 1 1 PRO A 792 VAL A 806 1 15 HELIX 2 2 ASN A 810 LYS A 820 1 11 HELIX 3 3 THR A 823 ASN A 825 5 3 HELIX 4 4 TYR A 826 ARG A 838 1 13 HELIX 5 5 GLU A 842 ASN A 844 5 3 HELIX 6 6 TYR A 845 MET A 856 1 12 HELIX 7 7 SER A 858 THR A 879 1 22 HELIX 8 8 ASP A 881 ILE A 885 5 5 HELIX 9 9 ASP A 886 THR A 901 1 16 HELIX 10 10 LEU A 902 ASN A 905 5 4 HELIX 11 11 ALA A 914 GLU A 925 1 12 HELIX 12 12 ARG A 927 ARG A 941 1 15 HELIX 13 13 ALA A 942 SER A 945 5 4 HELIX 14 14 ASN A 952 ALA A 969 1 18 HELIX 15 15 LYS A 972 PHE A 986 1 15 HELIX 16 16 PRO B 10 LEU B 14 5 5 HELIX 17 17 TRP B 20 SER B 22 5 3 HELIX 18 18 ASN B 23 VAL B 35 1 13 HELIX 19 19 VAL B 62 LEU B 76 1 15 HELIX 20 20 ASN B 127 GLY B 135 1 9 HELIX 21 21 ASP B 137 ASP B 147 1 11 HELIX 22 22 ALA B 163 ASN B 176 1 14 HELIX 23 23 ASN B 182 MET B 194 1 13 HELIX 24 24 LEU B 200 GLU B 209 1 10 HELIX 25 25 PHE B 210 ASN B 212 5 3 HELIX 26 26 SER B 228 LEU B 236 1 9 HELIX 27 27 PHE B 241 THR B 245 5 5 HELIX 28 28 THR B 246 MET B 266 1 21 HELIX 29 29 PHE B 275 GLN B 279 5 5 SHEET 1 BA 6 ARG B 17 VAL B 19 0 SHEET 2 BA 6 THR B 99 ASN B 103 1 O THR B 99 N ARG B 17 SHEET 3 BA 6 PRO B 78 SER B 86 -1 O LEU B 81 N PHE B 102 SHEET 4 BA 6 HIS B 40 PHE B 47 -1 O HIS B 40 N SER B 86 SHEET 5 BA 6 THR B 157 THR B 160 1 O THR B 157 N VAL B 41 SHEET 6 BA 6 PHE B 197 ASP B 199 1 O TYR B 198 N THR B 160 CISPEP 1 PRO A 950 PRO A 951 0 14.02 CRYST1 71.850 76.560 109.908 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009099 0.00000