HEADER TRANSCRIPTION/RNA 30-AUG-12 4B8T TITLE RNA BINDING PROTEIN SOLUTION STRUCTURE OF THE THIRD KH TITLE 2 DOMAIN OF KSRP IN COMPLEX WITH THE G-RICH TARGET SEQUENCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: KH-TYPE SPLICING REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD KH DOMAIN, RESIDUES 317-418; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(*AP*GP*GP*GP*UP)-3'; COMPND 8 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION-RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.NICASTRO,M.F.GARCIA-MAYORAL,D.HOLLINGWORTH,G.KELLY,S.R.MARTIN, AUTHOR 2 P.BRIATA,R.GHERZI,A.RAMOS REVDAT 5 16-JAN-13 4B8T 1 JRNL REVDAT 4 05-DEC-12 4B8T 1 ATOM REVDAT 3 28-NOV-12 4B8T 1 HEADER KEYWDS REVDAT 2 21-NOV-12 4B8T 1 JRNL REVDAT 1 07-NOV-12 4B8T 0 JRNL AUTH G.NICASTRO,M.F.GARCIA-MAYORAL,D.HOLLINGWORTH,G.KELLY, JRNL AUTH 2 S.R.MARTIN,P.BRIATA,R.GHERZI,A.RAMOS JRNL TITL NONCANONICAL G RECOGNITION MEDIATES KSRP REGULATION OF JRNL TITL 2 LET-7 BIOGENESIS JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1282 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23142982 JRNL DOI 10.1038/NSMB.2427 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.F.GARCIA-MAYORAL,D.HOLLINGWORTH,L.MASINO,I.DIAZ-MORENO, REMARK 1 AUTH 2 G.KELLY,R.GHERZI,C.CHOU,C.CHEN,A.RAMOS REMARK 1 TITL THE STRUCTURE OF THE C-TERMINAL KH DOMAINS OF KSRP REVEALS REMARK 1 TITL 2 A NONCANONICAL MOTIF IMPORTANT FOR MRNA DEGRADATION. REMARK 1 REF STRUCTURE V. 15 485 2007 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 17437720 REMARK 1 DOI 10.1016/J.STR.2007.03.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, REMARK 3 : RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-12. REMARK 100 THE PDBE ID CODE IS EBI-53919. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR 3.5, VNMR, NMRPIPE, REMARK 210 SPARKY, ARIA 1.2 REMARK 210 METHOD USED : ARIA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 49 100.28 175.24 REMARK 500 1 THR A 52 59.81 -91.04 REMARK 500 2 ARG A 8 113.48 -172.78 REMARK 500 2 PRO A 89 99.35 -62.69 REMARK 500 2 PRO A 92 99.72 -67.59 REMARK 500 2 PRO A 96 45.13 -78.08 REMARK 500 3 ARG A 8 -72.22 -83.64 REMARK 500 3 SER A 21 14.86 -143.55 REMARK 500 3 GLN A 48 -82.21 60.33 REMARK 500 3 PRO A 92 47.12 -79.43 REMARK 500 3 MET A 94 129.31 70.83 REMARK 500 3 PRO A 96 32.49 -95.15 REMARK 500 4 ARG A 8 72.45 -100.50 REMARK 500 4 SER A 29 14.10 -140.92 REMARK 500 4 PRO A 92 43.61 -74.00 REMARK 500 4 ARG A 103 75.78 63.64 REMARK 500 5 SER A 29 11.98 -142.08 REMARK 500 5 ARG A 101 174.49 70.75 REMARK 500 6 ALA A 2 -73.56 -102.60 REMARK 500 6 SER A 21 16.25 -142.47 REMARK 500 6 GLN A 48 125.00 53.10 REMARK 500 6 SER A 83 -77.03 -104.77 REMARK 500 6 PRO A 89 43.87 -84.20 REMARK 500 6 GLN A 105 132.24 74.51 REMARK 500 7 ALA A 4 96.21 67.12 REMARK 500 7 ASP A 50 -76.25 -49.33 REMARK 500 7 PRO A 96 72.75 -68.38 REMARK 500 7 GLN A 105 79.80 62.84 REMARK 500 8 SER A 21 16.42 -145.32 REMARK 500 8 GLN A 48 76.61 -110.10 REMARK 500 8 ASP A 50 -29.95 -165.75 REMARK 500 8 THR A 52 32.38 -153.01 REMARK 500 8 ARG A 82 44.40 -86.61 REMARK 500 9 ALA A 2 44.58 -84.24 REMARK 500 9 MET A 3 82.57 -156.02 REMARK 500 9 ALA A 4 175.42 67.85 REMARK 500 9 SER A 29 20.05 -156.80 REMARK 500 9 GLN A 48 179.63 66.24 REMARK 500 9 ARG A 82 75.07 61.07 REMARK 500 9 PRO A 86 85.34 -68.41 REMARK 500 10 ARG A 99 51.08 -93.27 REMARK 500 11 ARG A 8 82.37 -152.49 REMARK 500 11 SER A 29 13.63 -147.79 REMARK 500 12 ALA A 2 40.27 -143.71 REMARK 500 12 MET A 3 47.65 -85.29 REMARK 500 12 GLN A 48 -153.47 43.95 REMARK 500 12 PRO A 86 49.96 -76.73 REMARK 500 12 ARG A 103 -71.55 68.41 REMARK 500 13 ALA A 4 77.07 -163.24 REMARK 500 13 TYR A 5 57.02 -109.01 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 4B8T A 5 106 UNP Q92945 FUBP2_HUMAN 317 418 DBREF 4B8T B 1 5 PDB 4B8T 4B8T 1 5 SEQADV 4B8T GLY A 1 UNP Q92945 EXPRESSION TAG SEQADV 4B8T ALA A 2 UNP Q92945 EXPRESSION TAG SEQADV 4B8T MET A 3 UNP Q92945 EXPRESSION TAG SEQADV 4B8T ALA A 4 UNP Q92945 EXPRESSION TAG SEQRES 1 A 106 GLY ALA MET ALA TYR GLY SER ARG ILE GLY GLY GLY ILE SEQRES 2 A 106 ASP VAL PRO VAL PRO ARG HIS SER VAL GLY VAL VAL ILE SEQRES 3 A 106 GLY ARG SER GLY GLU MET ILE LYS LYS ILE GLN ASN ASP SEQRES 4 A 106 ALA GLY VAL ARG ILE GLN PHE LYS GLN ASP ASP GLY THR SEQRES 5 A 106 GLY PRO GLU LYS ILE ALA HIS ILE MET GLY PRO PRO ASP SEQRES 6 A 106 ARG CYS GLU HIS ALA ALA ARG ILE ILE ASN ASP LEU LEU SEQRES 7 A 106 GLN SER LEU ARG SER GLY PRO PRO GLY PRO PRO GLY GLY SEQRES 8 A 106 PRO GLY MET PRO PRO GLY GLY ARG GLY ARG GLY ARG GLY SEQRES 9 A 106 GLN GLY SEQRES 1 B 5 A G G G U HELIX 1 1 SER A 21 GLY A 27 1 7 HELIX 2 2 GLY A 30 GLY A 41 1 12 HELIX 3 3 PRO A 63 SER A 80 1 18 SHEET 1 AA 3 ILE A 13 PRO A 18 0 SHEET 2 AA 3 GLU A 55 MET A 61 -1 O LYS A 56 N VAL A 17 SHEET 3 AA 3 ARG A 43 PHE A 46 -1 O ARG A 43 N MET A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1