HEADER TRANSPORT PROTEIN/SIDEROPHORE 31-AUG-12 4B8Y TITLE FERRICHROME-BOUND FHUD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FHUD2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VIRULENCE FACTOR; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-24B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS TRANSPORT PROTEIN-SIDEROPHORE COMPLEX, TRANSPORT PROTEIN, VACCINE, KEYWDS 2 SIDEROPHORE, CLASS III SOLUTE BINDING, INHIBITOR PROTEIN (SBP) EXPDTA X-RAY DIFFRACTION AUTHOR E.MALITO,M.J.BOTTOMLEY,G.SPRAGGON REVDAT 5 20-DEC-23 4B8Y 1 REMARK REVDAT 4 15-NOV-23 4B8Y 1 REMARK LINK ATOM REVDAT 3 23-JAN-13 4B8Y 1 JRNL REVDAT 2 05-DEC-12 4B8Y 1 JRNL REVDAT 1 21-NOV-12 4B8Y 0 JRNL AUTH P.MARIOTTI,E.MALITO,M.BIANCUCCI,P.LO SURDO,R.P.MISHRA, JRNL AUTH 2 V.NARDI-DEI,S.SAVINO,M.NISSUM,G.SPRAGGON,G.GRANDI,F.BAGNOLI, JRNL AUTH 3 M.J.BOTTOMLEY JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 STAPHYLOCOCCUS AUREUS VIRULENCE FACTOR AND VACCINE CANDIDATE JRNL TITL 3 FHUD2. JRNL REF BIOCHEM.J. V. 449 683 2013 JRNL REFN ISSN 0264-6021 JRNL PMID 23113737 JRNL DOI 10.1042/BJ20121426 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1432 - 3.7989 1.00 2700 136 0.1799 0.2129 REMARK 3 2 3.7989 - 3.0158 1.00 2647 134 0.1613 0.2208 REMARK 3 3 3.0158 - 2.6347 1.00 2619 140 0.1671 0.1990 REMARK 3 4 2.6347 - 2.3938 1.00 2601 138 0.1589 0.2278 REMARK 3 5 2.3938 - 2.2223 1.00 2621 138 0.1533 0.2156 REMARK 3 6 2.2223 - 2.0913 1.00 2611 116 0.1728 0.2284 REMARK 3 7 2.0913 - 1.9866 1.00 2604 148 0.2005 0.2759 REMARK 3 8 1.9866 - 1.9001 1.00 2589 144 0.2431 0.2986 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 47.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.93650 REMARK 3 B22 (A**2) : -2.43630 REMARK 3 B33 (A**2) : -1.50020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.45560 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2333 REMARK 3 ANGLE : 1.317 3086 REMARK 3 CHIRALITY : 0.083 327 REMARK 3 PLANARITY : 0.006 382 REMARK 3 DIHEDRAL : 14.164 888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:42) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8641 16.3433 -5.0696 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0648 REMARK 3 T33: 0.0280 T12: 0.0716 REMARK 3 T13: -0.1258 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.2567 L22: 0.0016 REMARK 3 L33: 0.2317 L12: -0.0090 REMARK 3 L13: 0.1518 L23: 0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: -0.0196 S13: 0.0781 REMARK 3 S21: 0.0170 S22: 0.0723 S23: 0.0037 REMARK 3 S31: -0.0312 S32: -0.0835 S33: 0.2339 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 43:97) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1514 -0.0781 1.1351 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1497 REMARK 3 T33: 0.1900 T12: -0.0502 REMARK 3 T13: -0.0235 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 4.0290 L22: 2.7425 REMARK 3 L33: 2.6518 L12: -1.0611 REMARK 3 L13: 0.1949 L23: -0.0103 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.0416 S13: -0.1291 REMARK 3 S21: -0.0934 S22: -0.0988 S23: 0.2466 REMARK 3 S31: 0.2685 S32: -0.3584 S33: -0.0171 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 98:150) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0251 10.2236 -0.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.1628 T22: 0.1243 REMARK 3 T33: 0.1755 T12: 0.0184 REMARK 3 T13: -0.0409 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.6043 L22: 2.4775 REMARK 3 L33: 2.5021 L12: -0.5087 REMARK 3 L13: -0.2280 L23: 0.8181 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: -0.0117 S13: 0.0783 REMARK 3 S21: -0.3855 S22: -0.1136 S23: 0.1505 REMARK 3 S31: -0.2539 S32: -0.3341 S33: 0.0074 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 151:196) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4991 9.0772 22.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.1711 REMARK 3 T33: 0.1670 T12: -0.0084 REMARK 3 T13: 0.0229 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 3.4610 L22: 1.7667 REMARK 3 L33: 2.5354 L12: 0.3862 REMARK 3 L13: 0.5371 L23: -0.6325 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.3177 S13: 0.0280 REMARK 3 S21: 0.3163 S22: -0.1174 S23: 0.0340 REMARK 3 S31: 0.0991 S32: -0.2393 S33: 0.1585 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 197:211) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0231 10.8941 20.6746 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.1283 REMARK 3 T33: 0.1189 T12: -0.0272 REMARK 3 T13: -0.0059 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.9236 L22: 3.1856 REMARK 3 L33: 5.5491 L12: -0.6746 REMARK 3 L13: -1.8614 L23: -0.0720 REMARK 3 S TENSOR REMARK 3 S11: -0.1881 S12: -0.2295 S13: 0.1446 REMARK 3 S21: 0.4477 S22: -0.0376 S23: 0.0850 REMARK 3 S31: -0.0377 S32: -0.1745 S33: 0.2330 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 212:231) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4428 17.5938 16.9327 REMARK 3 T TENSOR REMARK 3 T11: 0.2110 T22: 0.1424 REMARK 3 T33: 0.2624 T12: -0.0515 REMARK 3 T13: -0.0239 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 8.1406 L22: 3.0758 REMARK 3 L33: 7.1435 L12: 1.2871 REMARK 3 L13: 0.6441 L23: 0.0761 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.2528 S13: 0.0703 REMARK 3 S21: 0.1601 S22: -0.0673 S23: -0.6819 REMARK 3 S31: -0.1791 S32: 0.4340 S33: 0.0861 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 232:277) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0514 4.6904 22.9739 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.2810 REMARK 3 T33: 0.2324 T12: 0.0650 REMARK 3 T13: -0.0843 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.8882 L22: 1.7797 REMARK 3 L33: 2.1670 L12: 0.3081 REMARK 3 L13: 0.6701 L23: -0.6432 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.2795 S13: -0.1095 REMARK 3 S21: 0.3089 S22: -0.0397 S23: -0.4679 REMARK 3 S31: 0.2521 S32: 0.4954 S33: -0.0211 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97650 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22105 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3G9Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-2000, 0.01M NICL2, 0.1M TRIS REMARK 280 -HCL PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.07000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 26 CB MET A 26 CG -0.225 REMARK 500 GLY B 804 C AHO B 803 N 0.198 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 806 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 GLY B 806 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 AHO B 803 C - N - CA ANGL. DEV. = -16.2 DEGREES REMARK 500 AHO B 803 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 89.08 158.56 REMARK 500 ASN A 196 42.83 -150.27 REMARK 500 GLN A 206 -63.63 -107.12 REMARK 500 THR A 244 35.65 -84.08 REMARK 500 ASN A 281 23.09 -144.54 REMARK 500 AHO B 803 -148.36 -147.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 805 15.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 800 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AHO B 801 O3 REMARK 620 2 AHO B 801 O2 82.3 REMARK 620 3 AHO B 801 N2 55.8 27.1 REMARK 620 4 AHO B 802 N2 147.5 93.2 118.2 REMARK 620 5 AHO B 802 O2 173.8 97.3 124.4 26.3 REMARK 620 6 AHO B 802 O3 95.0 100.6 106.0 54.0 78.9 REMARK 620 7 AHO B 803 O3 83.4 160.5 135.3 106.0 98.3 93.8 REMARK 620 8 AHO B 803 O2 98.4 93.6 91.9 114.1 87.8 161.7 75.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF VIRULENCE FACTOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 CLONED WITHOUT THE SIGNAL PEPTIDE AND LIPOBOX MOTIF DBREF 4B8Y A 27 302 UNP Q2FVW9 Q2FVW9_STAA8 27 302 DBREF 4B8Y B 806 801 PDB 4B8Y 4B8Y 806 801 SEQADV 4B8Y MET A 26 UNP Q2FVW9 EXPRESSION TAG SEQRES 1 A 277 MET LYS ALA GLU THR LYS SER TYR LYS MET ASP ASP GLY SEQRES 2 A 277 LYS THR VAL ASP ILE PRO LYS ASP PRO LYS ARG ILE ALA SEQRES 3 A 277 VAL VAL ALA PRO THR TYR ALA GLY GLY LEU LYS LYS LEU SEQRES 4 A 277 GLY ALA ASN ILE VAL ALA VAL ASN GLN GLN VAL ASP GLN SEQRES 5 A 277 SER LYS VAL LEU LYS ASP LYS PHE LYS GLY VAL THR LYS SEQRES 6 A 277 ILE GLY ASP GLY ASP VAL GLU LYS VAL ALA LYS GLU LYS SEQRES 7 A 277 PRO ASP LEU ILE ILE VAL TYR SER THR ASP LYS ASP ILE SEQRES 8 A 277 LYS LYS TYR GLN LYS VAL ALA PRO THR VAL VAL VAL ASP SEQRES 9 A 277 TYR ASN LYS HIS LYS TYR LEU GLU GLN GLN GLU MET LEU SEQRES 10 A 277 GLY LYS ILE VAL GLY LYS GLU ASP LYS VAL LYS ALA TRP SEQRES 11 A 277 LYS LYS ASP TRP GLU GLU THR THR ALA LYS ASP GLY LYS SEQRES 12 A 277 GLU ILE LYS LYS ALA ILE GLY GLN ASP ALA THR VAL SER SEQRES 13 A 277 LEU PHE ASP GLU PHE ASP LYS LYS LEU TYR THR TYR GLY SEQRES 14 A 277 ASP ASN TRP GLY ARG GLY GLY GLU VAL LEU TYR GLN ALA SEQRES 15 A 277 PHE GLY LEU LYS MET GLN PRO GLU GLN GLN LYS LEU THR SEQRES 16 A 277 ALA LYS ALA GLY TRP ALA GLU VAL LYS GLN GLU GLU ILE SEQRES 17 A 277 GLU LYS TYR ALA GLY ASP TYR ILE VAL SER THR SER GLU SEQRES 18 A 277 GLY LYS PRO THR PRO GLY TYR GLU SER THR ASN MET TRP SEQRES 19 A 277 LYS ASN LEU LYS ALA THR LYS GLU GLY HIS ILE VAL LYS SEQRES 20 A 277 VAL ASP ALA GLY THR TYR TRP TYR ASN ASP PRO TYR THR SEQRES 21 A 277 LEU ASP PHE MET ARG LYS ASP LEU LYS GLU LYS LEU ILE SEQRES 22 A 277 LYS ALA ALA LYS SEQRES 1 B 6 GLY GLY GLY AHO AHO AHO MODRES 4B8Y AHO B 803 ALA N-ACETYL-N-HYDROXY-L-ORNITHINE MODRES 4B8Y AHO B 802 ALA N-ACETYL-N-HYDROXY-L-ORNITHINE MODRES 4B8Y AHO B 801 ALA N-ACETYL-N-HYDROXY-L-ORNITHINE HET AHO B 803 12 HET AHO B 802 12 HET AHO B 801 12 HET EDO A1303 4 HET EDO A1304 4 HET EDO A1305 4 HET EDO A1306 4 HET EDO A1307 4 HET EDO A1308 4 HET EDO A1309 4 HET EDO A1310 4 HET EDO A1311 4 HET EDO A1312 4 HET CL A1313 1 HET FE B 800 1 HETNAM AHO N-ACETYL-N-HYDROXY-L-ORNITHINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM FE FE (III) ION HETSYN AHO 5-(ACETYL-HYDROXY-AMINO)-2-AMINO-PENTANOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 AHO 3(C7 H14 N2 O4) FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 CL CL 1- FORMUL 14 FE FE 3+ FORMUL 15 HOH *126(H2 O) HELIX 1 1 ALA A 54 THR A 56 5 3 HELIX 2 2 TYR A 57 LEU A 64 1 8 HELIX 3 3 GLN A 74 SER A 78 5 5 HELIX 4 4 VAL A 80 PHE A 85 1 6 HELIX 5 5 ASP A 95 GLU A 102 1 8 HELIX 6 6 ASP A 115 ALA A 123 1 9 HELIX 7 7 ASP A 129 HIS A 133 5 5 HELIX 8 8 LYS A 134 GLY A 147 1 14 HELIX 9 9 LYS A 148 GLY A 175 1 28 HELIX 10 10 GLY A 200 GLN A 206 1 7 HELIX 11 11 GLN A 213 ALA A 221 1 9 HELIX 12 12 LYS A 229 ALA A 237 5 9 HELIX 13 13 PRO A 251 SER A 255 5 5 HELIX 14 14 THR A 256 ASN A 261 1 6 HELIX 15 15 LEU A 262 GLU A 267 1 6 HELIX 16 16 ASP A 274 TRP A 279 1 6 HELIX 17 17 ASP A 282 ALA A 301 1 20 SHEET 1 AA 2 THR A 30 LYS A 34 0 SHEET 2 AA 2 THR A 40 PRO A 44 -1 O VAL A 41 N TYR A 33 SHEET 1 AB 5 THR A 89 ILE A 91 0 SHEET 2 AB 5 ILE A 68 ASN A 72 1 O VAL A 69 N THR A 89 SHEET 3 AB 5 ILE A 50 VAL A 52 1 O ILE A 50 N VAL A 69 SHEET 4 AB 5 LEU A 106 TYR A 110 1 O LEU A 106 N ALA A 51 SHEET 5 AB 5 THR A 125 VAL A 128 1 O VAL A 126 N VAL A 109 SHEET 1 AC 2 LYS A 211 MET A 212 0 SHEET 2 AC 2 THR A 179 PHE A 186 1 N VAL A 180 O LYS A 211 SHEET 1 AD 5 TRP A 225 GLU A 227 0 SHEET 2 AD 5 LYS A 189 TYR A 193 -1 O THR A 192 N ALA A 226 SHEET 3 AD 5 THR A 179 PHE A 186 -1 O LEU A 182 N TYR A 193 SHEET 4 AD 5 TYR A 240 SER A 243 1 O TYR A 240 N SER A 181 SHEET 5 AD 5 ILE A 270 LYS A 272 1 O VAL A 271 N SER A 243 SHEET 1 AE 4 TRP A 225 GLU A 227 0 SHEET 2 AE 4 LYS A 189 TYR A 193 -1 O THR A 192 N ALA A 226 SHEET 3 AE 4 THR A 179 PHE A 186 -1 O LEU A 182 N TYR A 193 SHEET 4 AE 4 LYS A 211 MET A 212 1 O LYS A 211 N VAL A 180 LINK N AHO B 801 C AHO B 802 1555 1555 1.46 LINK C AHO B 801 N GLY B 806 1555 1555 1.44 LINK N AHO B 802 C AHO B 803 1555 1555 1.45 LINK N AHO B 803 C GLY B 804 1555 1555 1.53 LINK FE FE B 800 O3 AHO B 801 1555 1555 2.08 LINK FE FE B 800 O2 AHO B 801 1555 1555 1.95 LINK FE FE B 800 N2 AHO B 801 1555 1555 2.68 LINK FE FE B 800 N2 AHO B 802 1555 1555 2.79 LINK FE FE B 800 O2 AHO B 802 1555 1555 2.10 LINK FE FE B 800 O3 AHO B 802 1555 1555 2.11 LINK FE FE B 800 O3 AHO B 803 1555 1555 2.16 LINK FE FE B 800 O2 AHO B 803 1555 1555 2.13 SITE 1 AC1 3 ASP A 76 LYS A 90 HOH A2022 SITE 1 AC2 9 THR A 56 TYR A 130 TRP A 197 GLY A 198 SITE 2 AC2 9 GLU A 202 TRP A 279 TYR A 280 ASN A 281 SITE 3 AC2 9 AHO B 801 SITE 1 AC3 4 GLY A 94 ASP A 95 VAL A 96 GLU A 97 SITE 1 AC4 5 VAL A 41 GLN A 120 PRO A 124 THR A 125 SITE 2 AC4 5 HOH A2051 SITE 1 AC5 5 ASP A 184 PHE A 186 ARG A 199 ALA A 275 SITE 2 AC5 5 HOH A2116 SITE 1 AC6 4 GLN A 73 GLY A 92 ASP A 95 HOH A2032 SITE 1 AC7 5 ASN A 131 LYS A 134 ASN A 196 TRP A 197 SITE 2 AC7 5 HOH A2082 SITE 1 AC8 5 PRO A 55 ASN A 72 GLN A 74 HOH A2010 SITE 2 AC8 5 AHO B 802 SITE 1 AC9 4 ALA A 223 TRP A 225 HOH A2097 GLY B 805 SITE 1 BC1 7 TYR A 33 MET A 35 ASP A 36 VAL A 126 SITE 2 BC1 7 VAL A 127 HIS A 133 MET A 141 SITE 1 BC2 4 GLN A 138 GLN A 139 HOH A2012 HOH A2059 SITE 1 BC3 3 AHO B 801 AHO B 802 AHO B 803 SITE 1 BC4 15 THR A 112 TYR A 130 PHE A 186 TRP A 197 SITE 2 BC4 15 ARG A 199 TRP A 225 TRP A 279 EDO A1304 SITE 3 BC4 15 EDO A1310 EDO A1311 HOH A2046 HOH A2053 SITE 4 BC4 15 FE B 800 HOH B2001 HOH B2002 CRYST1 53.890 50.140 54.350 90.00 106.44 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018556 0.000000 0.005476 0.00000 SCALE2 0.000000 0.019944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019184 0.00000