HEADER TRANSFERASE/DNA 05-SEP-12 4B9M TITLE STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE TITLE 2 FORMAMIDOPYRIMIDINE-DA DNA LESION -THYMINE BASEPAIR IN THE POST- TITLE 3 INSERTION SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*TP*TP)-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(*DC*DA*DA*FAX*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3'; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PDEST007; SOURCE 8 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS DSM NO. 22; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 12 ORGANISM_TAXID: 1422; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 16 ORGANISM_TAXID: 1422 KEYWDS TRANSFERASE-DNA COMPLEX, OXIDATIVE DNA LESION, DNA DAMAGE, KEYWDS 2 TRANSLESION DNA SYNTHESIS, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR T.H.GEHRKE,U.LISCHKE,S.ARNOLD,S.SCHNEIDER,T.CARELL REVDAT 5 20-DEC-23 4B9M 1 REMARK LINK REVDAT 4 03-JUL-13 4B9M 1 JRNL REVDAT 3 29-MAY-13 4B9M 1 JRNL REVDAT 2 22-MAY-13 4B9M 1 AUTHOR JRNL REVDAT 1 17-APR-13 4B9M 0 JRNL AUTH T.H.GEHRKE,U.LISCHKE,K.L.GASTEIGER,S.SCHNEIDER,S.ARNOLD, JRNL AUTH 2 H.C.MULLER,D.S.STEPHENSON,H.ZIPSE,T.CARELL JRNL TITL UNEXPECTED NON-HOOGSTEEN-BASED MUTAGENICITY MECHANISM OF JRNL TITL 2 FAPY-DNA LESIONS. JRNL REF NAT.CHEM.BIOL. V. 9 455 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23685671 JRNL DOI 10.1038/NCHEMBIO.1254 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 472 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.20000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5317 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3527 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7290 ; 1.566 ; 2.091 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8609 ; 0.942 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 5.562 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;32.062 ;24.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 883 ;14.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.954 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5525 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1008 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2911 ; 0.819 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1164 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4699 ; 1.519 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2406 ; 2.620 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2587 ; 4.036 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 498 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5971 -18.3526 -45.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0150 REMARK 3 T33: 0.0088 T12: -0.0033 REMARK 3 T13: 0.0061 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.2532 L22: 1.5357 REMARK 3 L33: 0.9825 L12: 0.7128 REMARK 3 L13: 0.1161 L23: 0.2907 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: 0.1296 S13: -0.0701 REMARK 3 S21: -0.1806 S22: 0.0634 S23: -0.0297 REMARK 3 S31: 0.0304 S32: 0.0203 S33: 0.0039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 499 A 587 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3723 -8.4010 -9.7647 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.1548 REMARK 3 T33: 0.1191 T12: 0.0150 REMARK 3 T13: -0.0317 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.1133 L22: 1.3377 REMARK 3 L33: 6.2227 L12: -0.4757 REMARK 3 L13: 1.1790 L23: -1.4398 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.1422 S13: 0.0347 REMARK 3 S21: 0.1105 S22: -0.0790 S23: -0.0531 REMARK 3 S31: 0.0046 S32: 0.2020 S33: 0.0746 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 588 A 654 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9513 0.0348 -28.8554 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0650 REMARK 3 T33: 0.0556 T12: -0.0012 REMARK 3 T13: 0.0022 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.5403 L22: 1.2900 REMARK 3 L33: 0.5247 L12: -0.0028 REMARK 3 L13: -0.4270 L23: -0.0661 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.1580 S13: 0.0420 REMARK 3 S21: 0.1204 S22: -0.0514 S23: -0.2308 REMARK 3 S31: 0.0160 S32: 0.1815 S33: 0.0176 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 655 A 747 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9804 -1.6076 -2.7008 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.0581 REMARK 3 T33: 0.0313 T12: -0.0014 REMARK 3 T13: -0.0205 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.2911 L22: 1.7314 REMARK 3 L33: 1.9784 L12: 0.3165 REMARK 3 L13: 1.2800 L23: 0.1245 REMARK 3 S TENSOR REMARK 3 S11: 0.1111 S12: -0.2826 S13: -0.1351 REMARK 3 S21: 0.3055 S22: -0.0356 S23: -0.1500 REMARK 3 S31: 0.1471 S32: 0.0127 S33: -0.0755 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 748 A 876 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7371 -2.8404 -22.9828 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0064 REMARK 3 T33: 0.0082 T12: -0.0023 REMARK 3 T13: -0.0023 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.9239 L22: 1.8987 REMARK 3 L33: 0.8678 L12: 0.5913 REMARK 3 L13: -0.4614 L23: -0.5918 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: -0.0407 S13: -0.0033 REMARK 3 S21: 0.1202 S22: -0.0219 S23: -0.0601 REMARK 3 S31: -0.0431 S32: 0.0145 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 22 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2920 -26.7414 -26.6689 REMARK 3 T TENSOR REMARK 3 T11: 0.5482 T22: 0.5036 REMARK 3 T33: 0.4004 T12: 0.0208 REMARK 3 T13: -0.0465 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 5.4438 L22: 8.6182 REMARK 3 L33: 11.2744 L12: 1.7213 REMARK 3 L13: 7.8196 L23: 2.5664 REMARK 3 S TENSOR REMARK 3 S11: 0.3296 S12: 0.0882 S13: -0.0150 REMARK 3 S21: 0.8046 S22: -0.2837 S23: -0.5339 REMARK 3 S31: 0.4222 S32: -0.0017 S33: -0.0458 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7469 -11.3210 -15.3968 REMARK 3 T TENSOR REMARK 3 T11: 0.1924 T22: 0.2554 REMARK 3 T33: 0.2390 T12: -0.0678 REMARK 3 T13: -0.0099 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.0431 L22: 0.1218 REMARK 3 L33: 4.1548 L12: 0.3142 REMARK 3 L13: 0.1027 L23: 0.3373 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.0612 S13: -0.0881 REMARK 3 S21: 0.0450 S22: -0.0336 S23: -0.0009 REMARK 3 S31: 0.1978 S32: -0.1732 S33: -0.0063 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2102 -13.8101 -20.0723 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.2569 REMARK 3 T33: 0.1993 T12: 0.0130 REMARK 3 T13: -0.0549 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.0623 L22: 2.2863 REMARK 3 L33: 0.5489 L12: -0.8746 REMARK 3 L13: 0.6943 L23: -0.2269 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: -0.0848 S13: 0.0488 REMARK 3 S21: 0.2812 S22: -0.0188 S23: 0.1016 REMARK 3 S31: 0.1881 S32: -0.0396 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 15 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2882 -29.6020 -21.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.6427 T22: 0.4504 REMARK 3 T33: 0.5335 T12: 0.0354 REMARK 3 T13: -0.0926 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 7.0602 L22: 10.8119 REMARK 3 L33: 2.6888 L12: 6.2116 REMARK 3 L13: -0.7214 L23: 0.7147 REMARK 3 S TENSOR REMARK 3 S11: -0.1598 S12: 0.3804 S13: -0.9447 REMARK 3 S21: 0.1560 S22: 0.5321 S23: -0.5463 REMARK 3 S31: 1.0923 S32: -0.2384 S33: -0.3724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. RESIDUES 1-3 CAA IN CHAIN C ARE DISORDERED REMARK 4 REMARK 4 4B9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290053983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U45 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.20950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.52650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.82800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.52650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.20950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.82800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 258 REMARK 465 ALA A 259 REMARK 465 SER A 260 REMARK 465 TRP A 261 REMARK 465 SER A 262 REMARK 465 HIS A 263 REMARK 465 PRO A 264 REMARK 465 GLN A 265 REMARK 465 PHE A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 SER A 271 REMARK 465 THR A 272 REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 465 TYR A 275 REMARK 465 LYS A 276 REMARK 465 LYS A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 SER A 280 REMARK 465 ALA A 281 REMARK 465 ALA A 282 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 LEU A 285 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 ASN A 288 REMARK 465 LEU A 289 REMARK 465 TYR A 290 REMARK 465 PHE A 291 REMARK 465 GLN A 292 REMARK 465 GLY A 293 REMARK 465 SER A 294 REMARK 465 PHE A 295 REMARK 465 THR A 296 REMARK 465 DC C 1 REMARK 465 DA C 2 REMARK 465 DA C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 748 O4 SO4 A 1882 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 25 O3' DC B 25 C3' -0.040 REMARK 500 DT B 26 O3' DT B 26 C3' -0.059 REMARK 500 DT C 9 O3' DT C 9 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 343 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 859 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 859 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG B 19 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA B 24 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC B 25 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT B 26 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT B 28 C4 - C5 - C7 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT B 28 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT B 29 C5 - C4 - O4 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 6 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT C 9 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DA C 11 O5' - P - OP1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 402 97.60 -165.58 REMARK 500 ALA A 421 38.88 -85.69 REMARK 500 LEU A 477 -66.90 -123.74 REMARK 500 ILE A 588 -65.05 -90.21 REMARK 500 LEU A 610 -55.45 -121.78 REMARK 500 ILE A 628 -31.60 -130.85 REMARK 500 HIS A 768 15.30 82.75 REMARK 500 HIS A 829 -60.26 69.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1877 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 653 OD2 REMARK 620 2 TYR A 654 O 74.6 REMARK 620 3 ASP A 830 OD2 125.8 77.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1877 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1878 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1879 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1880 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1881 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1882 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1883 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XO7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DA:O-ALLYLHYDROXYLAMINE-DC BASEPAIR IN REMARK 900 COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ARTIFICIAL SALEN-COPPER BASEPAIR IN COMPLEX REMARK 900 WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASEPAIR IN COMPLEX WITH REMARK 900 FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASE IN THE PRE-INSERTION REMARK 900 SITE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A S-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A R-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 4B9L RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH THE OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DA DNA LESION IN THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9N RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I CORRECTLY BYPASSING REMARK 900 THE OXIDATIVE FORMAMIDOPYRIMIDINE-DA DNA LESION. REMARK 900 RELATED ID: 4B9S RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DG DNA LESION OUTSIDE OF THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9T RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DG DNA LESION -DC BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9U RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DG DNA LESION -DA BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9V RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH EXTENDING FROM REMARK 900 AN OXIDATIVE FORMAMIDOPYRIMIDINE-DG DNA LESION -DA BASEPAIR. DBREF 4B9M A 297 876 UNP E1C9K5 E1C9K5_GEOSE 1 580 DBREF 4B9M B 19 29 PDB 4B9M 4B9M 19 29 DBREF 4B9M C 1 15 PDB 4B9M 4B9M 1 15 SEQADV 4B9M MET A 258 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M ALA A 259 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M SER A 260 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M TRP A 261 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M SER A 262 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M HIS A 263 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M PRO A 264 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLN A 265 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M PHE A 266 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLU A 267 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M LYS A 268 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLY A 269 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M ALA A 270 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M SER A 271 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M THR A 272 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M SER A 273 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M LEU A 274 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M TYR A 275 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M LYS A 276 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M LYS A 277 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M ALA A 278 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLY A 279 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M SER A 280 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M ALA A 281 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M ALA A 282 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M ALA A 283 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M VAL A 284 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M LEU A 285 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLU A 286 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLU A 287 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M ASN A 288 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M LEU A 289 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M TYR A 290 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M PHE A 291 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLN A 292 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M GLY A 293 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M SER A 294 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M PHE A 295 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9M THR A 296 UNP E1C9K5 EXPRESSION TAG SEQRES 1 A 619 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 619 SER THR SER LEU TYR LYS LYS ALA GLY SER ALA ALA ALA SEQRES 3 A 619 VAL LEU GLU GLU ASN LEU TYR PHE GLN GLY SER PHE THR SEQRES 4 A 619 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 5 A 619 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 6 A 619 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 7 A 619 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 8 A 619 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 9 A 619 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 10 A 619 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 11 A 619 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 12 A 619 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 13 A 619 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 14 A 619 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 15 A 619 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 16 A 619 ALA ILE TRP ALA LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 17 A 619 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 18 A 619 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 19 A 619 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 20 A 619 GLU GLU LEU ALA GLU GLN LEU ARG THR VAL GLU GLN ARG SEQRES 21 A 619 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 22 A 619 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 23 A 619 LEU PRO VAL LEU LYS LYS SER LYS THR GLY TYR SER THR SEQRES 24 A 619 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 25 A 619 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 26 A 619 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 27 A 619 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 28 A 619 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 29 A 619 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 30 A 619 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 31 A 619 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 32 A 619 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 33 A 619 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 34 A 619 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 35 A 619 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 36 A 619 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 37 A 619 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 38 A 619 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 39 A 619 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 40 A 619 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 41 A 619 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 42 A 619 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 43 A 619 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 44 A 619 GLU GLU ARG LEU GLN ALA ARG LEU LEU LEU GLN VAL HIS SEQRES 45 A 619 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 46 A 619 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 47 A 619 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 48 A 619 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 B 11 DG DC DC DT DG DA DC DT DC DT DT SEQRES 1 C 15 DC DA DA FAX DA DG DA DG DT DC DA DG DG SEQRES 2 C 15 DC DT HET FAX C 4 22 HET MG A1877 1 HET SO4 A1880 5 HET SO4 A1881 5 HET SO4 A1882 5 HET SO4 A1883 5 HET SO4 A1878 5 HET SO4 A1879 5 HETNAM FAX [(1R,2S,4R)-4-{[6-AMINO-5-(FORMYLAMINO)PYRIMIDIN-4- HETNAM 2 FAX YL]AMINO}-2-HYDROXYCYCLOPENTYL]METHYL DIHYDROGEN HETNAM 3 FAX PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 FAX C11 H18 N5 O6 P FORMUL 4 MG MG 2+ FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *200(H2 O) HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 TRP A 382 1 11 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 PRO A 566 HIS A 568 5 3 HELIX 17 17 GLU A 569 TYR A 587 1 19 HELIX 18 18 ILE A 588 LYS A 593 1 6 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 GLN A 691 1 12 HELIX 24 24 SER A 693 VAL A 697 5 5 HELIX 25 25 THR A 698 TYR A 714 1 17 HELIX 26 26 SER A 717 ASN A 726 1 10 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 SER A 778 5 5 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 GLN A 854 1 15 SHEET 1 AA 6 THR A 302 ALA A 304 0 SHEET 2 AA 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA 6 GLY A 334 ASN A 339 -1 O ILE A 335 N LEU A 346 SHEET 4 AA 6 LYS A 315 GLU A 321 -1 O ALA A 317 N VAL A 338 SHEET 5 AA 6 LYS A 367 MET A 370 1 O LYS A 367 N ALA A 316 SHEET 6 AA 6 VAL A 390 ASP A 393 1 N SER A 391 O LYS A 368 SHEET 1 AB 3 LYS A 601 VAL A 602 0 SHEET 2 AB 3 VAL A 493 VAL A 495 -1 O VAL A 493 N VAL A 602 SHEET 3 AB 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AC 2 ILE A 605 ASN A 607 0 SHEET 2 AC 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 AD 4 ARG A 823 GLN A 827 0 SHEET 2 AD 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 AD 4 TRP A 647 TYR A 654 -1 O LEU A 648 N ALA A 836 SHEET 4 AD 4 VAL A 864 GLY A 869 -1 O ASP A 865 N ASP A 653 SHEET 1 AE 2 TYR A 762 THR A 764 0 SHEET 2 AE 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 LINK O3' FAX C 4 P DA C 5 1555 1555 1.62 LINK OD2 ASP A 653 MG MG A1877 1555 1555 2.88 LINK O TYR A 654 MG MG A1877 1555 1555 2.80 LINK OD2 ASP A 830 MG MG A1877 1555 1555 2.77 CISPEP 1 GLU A 620 PRO A 621 0 4.27 SITE 1 AC1 4 ASP A 653 TYR A 654 ASP A 830 SO4 A1878 SITE 1 AC2 3 SER A 655 GLN A 656 MG A1877 SITE 1 AC3 4 GLU A 321 VAL A 322 ASP A 425 TYR A 429 SITE 1 AC4 4 MET A 299 ALA A 300 ARG A 343 ARG A 677 SITE 1 AC5 4 HIS A 682 ARG A 702 LYS A 706 HOH A2140 SITE 1 AC6 6 GLU A 667 ASP A 668 ASP A 669 GLY A 745 SITE 2 AC6 6 ARG A 748 HOH A2144 SITE 1 AC7 2 ARG A 779 ARG A 819 CRYST1 88.419 93.656 105.053 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009519 0.00000