HEADER    REPLICATION                             08-SEP-12   4B9W              
TITLE     STRUCTURE OF EXTENDED TUDOR DOMAIN TD3 FROM MOUSE TDRD1 IN COMPLEX    
TITLE    2 WITH MILI PEPTIDE CONTAINING DIMETHYLARGININE 45.                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TUDOR DOMAIN-CONTAINING PROTEIN 1;                         
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: EXTENDED TUDOR DOMAIN TD3, RESIDUES 692-892;               
COMPND   5 SYNONYM: TDRD1;                                                      
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: PIWI-LIKE PROTEIN 2;                                       
COMPND   9 CHAIN: P, S;                                                         
COMPND  10 FRAGMENT: N-TERMINAL PEPTIDE CONTAINING METHYLATED ARG45, RESIDUES   
COMPND  11 38-50;                                                               
COMPND  12 SYNONYM: MILI;                                                       
COMPND  13 ENGINEERED: YES;                                                     
COMPND  14 OTHER_DETAILS: ARG45 IS SYMMETRICALLY DIMETHYLATED                   
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PETM11;                                    
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE  13 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE  14 ORGANISM_TAXID: 10090                                                
KEYWDS    REPLICATION                                                           
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    N.MATHIOUDAKIS,A.PALENCIA,J.KADLEC,A.ROUND,K.TRIPSIANES,M.SATTLER,    
AUTHOR   2 R.S.PILLAI,S.CUSACK                                                  
REVDAT   4   13-NOV-24 4B9W    1       REMARK SHEET  LINK                       
REVDAT   3   10-APR-19 4B9W    1       JRNL   REMARK DBREF  LINK                
REVDAT   2   31-OCT-12 4B9W    1       JRNL                                     
REVDAT   1   17-OCT-12 4B9W    0                                                
JRNL        AUTH   N.MATHIOUDAKIS,A.PALENCIA,J.KADLEC,A.ROUND,K.TRIPSIANES,     
JRNL        AUTH 2 M.SATTLER,R.S.PILLAI,S.CUSACK                                
JRNL        TITL   THE MULTIPLE TUDOR DOMAIN-CONTAINING PROTEIN TDRD1 IS A      
JRNL        TITL 2 MOLECULAR SCAFFOLD FOR MOUSE PIWI PROTEINS AND PIRNA         
JRNL        TITL 3 BIOGENESIS FACTORS.                                          
JRNL        REF    RNA                           V.  18  2056 2012              
JRNL        REFN                   ESSN 1469-9001                               
JRNL        PMID   22996915                                                     
JRNL        DOI    10.1261/RNA.034181.112                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.10 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.6.0116                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 36.94                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 95.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 24480                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.223                           
REMARK   3   R VALUE            (WORKING SET) : 0.219                           
REMARK   3   FREE R VALUE                     : 0.284                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1275                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.10                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.15                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1790                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 94.52                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2840                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 73                           
REMARK   3   BIN FREE R VALUE                    : 0.4150                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3207                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 12                                      
REMARK   3   SOLVENT ATOMS            : 186                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 15.79                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.00000                                              
REMARK   3    B22 (A**2) : 0.01000                                              
REMARK   3    B33 (A**2) : 0.08000                                              
REMARK   3    B12 (A**2) : 0.08000                                              
REMARK   3    B13 (A**2) : 0.07000                                              
REMARK   3    B23 (A**2) : 0.10000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.268         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.230         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.166         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.314         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.916                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.859                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3304 ; 0.010 ; 0.020       
REMARK   3   BOND LENGTHS OTHERS               (A):  2193 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4492 ; 1.377 ; 1.964       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  5360 ; 0.861 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   400 ; 6.684 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   152 ;34.436 ;24.803       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   534 ;14.557 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    14 ;15.833 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   503 ; 0.068 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3660 ; 0.005 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):   672 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS. U VALUES REFINED INDIVIDUALLY                            
REMARK   4                                                                      
REMARK   4 4B9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-12.                  
REMARK 100 THE DEPOSITION ID IS D_1290054012.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 18-FEB-11                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID14-4                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.939                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315R                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE                             
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 25755                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.100                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.5                               
REMARK 200  DATA REDUNDANCY                : 2.400                              
REMARK 200  R MERGE                    (I) : 0.11000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 7.2800                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.20                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 95.8                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.40                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.39000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.550                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: SHARP, RESOLVE                                        
REMARK 200 STARTING MODEL: NONE                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NONE                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 53.60                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN:PEPTIDE 1:5 RATIO, 0.2 M         
REMARK 280  AMMONIUM ACETATE, 0.05 M SODIUM CACODYLATE PH 6.5, 30 % PEG8000,    
REMARK 280  0.01 M MAGNESIUM ACETATE TETRAHYDRATE, VAPOR DIFFUSION, SITTING     
REMARK 280  DROP, TEMPERATURE 293K                                              
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1                              
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.1 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, S                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   692                                                      
REMARK 465     PRO A   693                                                      
REMARK 465     ALA A   694                                                      
REMARK 465     GLU A   695                                                      
REMARK 465     ALA A   696                                                      
REMARK 465     GLY B   692                                                      
REMARK 465     PRO B   693                                                      
REMARK 465     ALA B   694                                                      
REMARK 465     GLU B   695                                                      
REMARK 465     ALA B   696                                                      
REMARK 465     LYS B   750                                                      
REMARK 465     PRO B   751                                                      
REMARK 465     PRO B   752                                                      
REMARK 465     ASN B   753                                                      
REMARK 465     GLY B   754                                                      
REMARK 465     GLY P    38                                                      
REMARK 465     ARG P    39                                                      
REMARK 465     ALA P    40                                                      
REMARK 465     GLY P    41                                                      
REMARK 465     PRO P    42                                                      
REMARK 465     GLY S    38                                                      
REMARK 465     ARG S    39                                                      
REMARK 465     ALA S    40                                                      
REMARK 465     GLY S    41                                                      
REMARK 465     PRO S    42                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OE2  GLU A   722     O    HOH A  2021              2.08            
REMARK 500   O    HOH A  2009     O    HOH A  2035              2.12            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A 841   NE  -  CZ  -  NH1 ANGL. DEV. =   3.4 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A 722       93.23   -160.58                                   
REMARK 500    TYR A 794      -37.93   -137.90                                   
REMARK 500    ASN A 831     -124.91   -102.04                                   
REMARK 500    GLU B 722       97.85   -163.49                                   
REMARK 500    TYR B 794      -37.06   -134.32                                   
REMARK 500    ASN B 831     -109.36   -103.75                                   
REMARK 500    ARG B 890      151.79    -48.05                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 600                                                                      
REMARK 600 HETEROGEN                                                            
REMARK 600                                                                      
REMARK 600 GLYCEROL (GOL): FROM CRYOPROTECTANT                                  
REMARK 700                                                                      
REMARK 700 SHEET                                                                
REMARK 700 DETERMINATION METHOD: DSSP                                           
REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS          
REMARK 700 BELOW IS ACTUALLY AN  5-STRANDED BARREL THIS IS REPRESENTED BY       
REMARK 700 A  6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS              
REMARK 700 ARE IDENTICAL.                                                       
REMARK 700 SHEET                                                                
REMARK 700 DETERMINATION METHOD: DSSP                                           
REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS          
REMARK 700 BELOW IS ACTUALLY AN  5-STRANDED BARREL THIS IS REPRESENTED BY       
REMARK 700 A  6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS              
REMARK 700 ARE IDENTICAL.                                                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1893                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1893                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4B9X   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF EXTENDED TUDOR DOMAIN TD3 FROM MOUSE TDRD1              
DBREF  4B9W A  692   892  UNP    Q99MV1   TDRD1_MOUSE    692    892             
DBREF  4B9W B  692   892  UNP    Q99MV1   TDRD1_MOUSE    692    892             
DBREF  4B9W P   38    50  UNP    Q8CDG1   PIWL2_MOUSE     38     50             
DBREF  4B9W S   38    50  UNP    Q8CDG1   PIWL2_MOUSE     38     50             
SEQRES   1 A  201  GLY PRO ALA GLU ALA LEU GLU TRP THR TRP VAL GLU PHE          
SEQRES   2 A  201  THR VAL ASP GLU THR VAL ASP VAL VAL VAL CYS MET MET          
SEQRES   3 A  201  TYR SER PRO GLY GLU PHE TYR CYS HIS PHE LEU LYS ASP          
SEQRES   4 A  201  ASP ALA LEU GLU LYS LEU ASP ASP LEU ASN GLN SER LEU          
SEQRES   5 A  201  ALA ASP TYR CYS ALA GLN LYS PRO PRO ASN GLY PHE LYS          
SEQRES   6 A  201  ALA GLU ILE GLY ARG PRO CYS CYS ALA PHE PHE SER GLY          
SEQRES   7 A  201  ASP GLY ASN TRP TYR ARG ALA LEU VAL LYS GLU ILE LEU          
SEQRES   8 A  201  PRO SER GLY ASN VAL LYS VAL HIS PHE VAL ASP TYR GLY          
SEQRES   9 A  201  ASN VAL GLU GLU VAL THR THR ASP GLN LEU GLN ALA ILE          
SEQRES  10 A  201  LEU PRO GLN PHE LEU LEU LEU PRO PHE GLN GLY MET GLN          
SEQRES  11 A  201  CYS TRP LEU VAL ASP ILE GLN PRO PRO ASN LYS HIS TRP          
SEQRES  12 A  201  THR LYS GLU ALA THR ALA ARG PHE GLN ALA CYS VAL VAL          
SEQRES  13 A  201  GLY LEU LYS LEU GLN ALA ARG VAL VAL GLU ILE THR ALA          
SEQRES  14 A  201  ASN GLY VAL GLY VAL GLU LEU THR ASP LEU SER THR PRO          
SEQRES  15 A  201  TYR PRO LYS ILE ILE SER ASP VAL LEU ILE ARG GLU GLN          
SEQRES  16 A  201  LEU VAL LEU ARG CYS GLY                                      
SEQRES   1 B  201  GLY PRO ALA GLU ALA LEU GLU TRP THR TRP VAL GLU PHE          
SEQRES   2 B  201  THR VAL ASP GLU THR VAL ASP VAL VAL VAL CYS MET MET          
SEQRES   3 B  201  TYR SER PRO GLY GLU PHE TYR CYS HIS PHE LEU LYS ASP          
SEQRES   4 B  201  ASP ALA LEU GLU LYS LEU ASP ASP LEU ASN GLN SER LEU          
SEQRES   5 B  201  ALA ASP TYR CYS ALA GLN LYS PRO PRO ASN GLY PHE LYS          
SEQRES   6 B  201  ALA GLU ILE GLY ARG PRO CYS CYS ALA PHE PHE SER GLY          
SEQRES   7 B  201  ASP GLY ASN TRP TYR ARG ALA LEU VAL LYS GLU ILE LEU          
SEQRES   8 B  201  PRO SER GLY ASN VAL LYS VAL HIS PHE VAL ASP TYR GLY          
SEQRES   9 B  201  ASN VAL GLU GLU VAL THR THR ASP GLN LEU GLN ALA ILE          
SEQRES  10 B  201  LEU PRO GLN PHE LEU LEU LEU PRO PHE GLN GLY MET GLN          
SEQRES  11 B  201  CYS TRP LEU VAL ASP ILE GLN PRO PRO ASN LYS HIS TRP          
SEQRES  12 B  201  THR LYS GLU ALA THR ALA ARG PHE GLN ALA CYS VAL VAL          
SEQRES  13 B  201  GLY LEU LYS LEU GLN ALA ARG VAL VAL GLU ILE THR ALA          
SEQRES  14 B  201  ASN GLY VAL GLY VAL GLU LEU THR ASP LEU SER THR PRO          
SEQRES  15 B  201  TYR PRO LYS ILE ILE SER ASP VAL LEU ILE ARG GLU GLN          
SEQRES  16 B  201  LEU VAL LEU ARG CYS GLY                                      
SEQRES   1 P   13  GLY ARG ALA GLY PRO ALA GLY 2MR GLY LEU VAL PHE ARG          
SEQRES   1 S   13  GLY ARG ALA GLY PRO ALA GLY 2MR GLY LEU VAL PHE ARG          
MODRES 4B9W 2MR P   45  ARG  N3, N4-DIMETHYLARGININE                            
MODRES 4B9W 2MR S   45  ARG  N3, N4-DIMETHYLARGININE                            
HET    2MR  P  45      13                                                       
HET    2MR  S  45      13                                                       
HET    GOL  A1893       6                                                       
HET    GOL  B1893       6                                                       
HETNAM     2MR N3, N4-DIMETHYLARGININE                                          
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   3  2MR    2(C8 H18 N4 O2)                                              
FORMUL   5  GOL    2(C3 H8 O3)                                                  
FORMUL   7  HOH   *186(H2 O)                                                    
HELIX    1   1 ASP A  731  GLN A  749  1                                  19    
HELIX    2   2 THR A  801  ASP A  803  5                                   3    
HELIX    3   3 LEU A  809  LEU A  814  5                                   6    
HELIX    4   4 THR A  835  VAL A  847  1                                  13    
HELIX    5   5 ILE A  878  GLU A  885  1                                   8    
HELIX    6   6 ASP B  731  ALA B  748  1                                  18    
HELIX    7   7 THR B  801  ASP B  803  5                                   3    
HELIX    8   8 LEU B  809  LEU B  814  5                                   6    
HELIX    9   9 THR B  835  VAL B  847  1                                  13    
HELIX   10  10 ILE B  878  GLU B  885  1                                   8    
SHEET    1  AA 6 THR A 709  SER A 719  0                                        
SHEET    2  AA 6 LEU A 851  THR A 859 -1  O  LEU A 851   N  VAL A 712           
SHEET    3  AA 6 GLY A 862  ASP A 869  1  O  GLY A 862   N  THR A 859           
SHEET    4  AA 6 MET A 820  LEU A 824  1  O  GLN A 821   N  VAL A 863           
SHEET    5  AA 6 GLU A 722  PHE A 727 -1  O  PHE A 723   N  CYS A 822           
SHEET    6  AA 6 THR A 709  SER A 719  0                                        
SHEET    1  AB 5 VAL A 797  VAL A 800  0                                        
SHEET    2  AB 5 VAL A 787  PHE A 791 -1  O  VAL A 787   N  VAL A 800           
SHEET    3  AB 5 TRP A 773  ILE A 781 -1  O  LEU A 777   N  HIS A 790           
SHEET    4  AB 5 PRO A 762  PHE A 766 -1  O  CYS A 763   N  ALA A 776           
SHEET    5  AB 5 LEU A 805  ALA A 807 -1  O  GLN A 806   N  CYS A 764           
SHEET    1  AC 2 ILE A 827  GLN A 828  0                                        
SHEET    2  AC 2 LEU A 889  ARG A 890 -1  O  LEU A 889   N  GLN A 828           
SHEET    1  BA 6 THR B 709  SER B 719  0                                        
SHEET    2  BA 6 LEU B 851  ILE B 858 -1  O  LEU B 851   N  VAL B 712           
SHEET    3  BA 6 VAL B 863  ASP B 869  1  O  GLY B 864   N  VAL B 856           
SHEET    4  BA 6 MET B 820  LEU B 824  1  O  GLN B 821   N  VAL B 863           
SHEET    5  BA 6 GLU B 722  PHE B 727 -1  O  PHE B 723   N  CYS B 822           
SHEET    6  BA 6 THR B 709  SER B 719  0                                        
SHEET    1  BB 5 VAL B 797  VAL B 800  0                                        
SHEET    2  BB 5 VAL B 787  PHE B 791 -1  O  VAL B 787   N  VAL B 800           
SHEET    3  BB 5 TRP B 773  ILE B 781 -1  O  LEU B 777   N  HIS B 790           
SHEET    4  BB 5 PRO B 762  PHE B 766 -1  O  CYS B 763   N  ALA B 776           
SHEET    5  BB 5 LEU B 805  GLN B 806 -1  O  GLN B 806   N  CYS B 764           
SHEET    1  BC 2 ILE B 827  GLN B 828  0                                        
SHEET    2  BC 2 LEU B 889  ARG B 890 -1  O  LEU B 889   N  GLN B 828           
LINK         C   GLY P  44                 N   2MR P  45     1555   1555  1.34  
LINK         C   2MR P  45                 N   GLY P  46     1555   1555  1.32  
LINK         C   GLY S  44                 N   2MR S  45     1555   1555  1.33  
LINK         C   2MR S  45                 N   GLY S  46     1555   1555  1.32  
CISPEP   1 LYS A  750    PRO A  751          0         0.54                     
SITE     1 AC1  7 VAL B 714  CYS B 715  MET B 716  MET B 717                    
SITE     2 AC1  7 GLN B 843  2MR S  45  LEU S  47                               
SITE     1 AC2  5 CYS A 715  MET A 717  GLN A 843  2MR P  45                    
SITE     2 AC2  5 LEU P  47                                                     
CRYST1   39.940   53.960   60.790  93.69  98.56 111.68 P 1           2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.025038  0.009954  0.005105        0.00000                         
SCALE2      0.000000  0.019943  0.002612        0.00000                         
SCALE3      0.000000  0.000000  0.016777        0.00000                         
MTRIX1   1  1.000000  0.000000  0.000000        0.00000    1                    
MTRIX2   1  0.000000  1.000000  0.000000        0.00000    1                    
MTRIX3   1  0.000000  0.000000  1.000000        0.00000    1                    
MTRIX1   2  0.999988 -0.000511  0.004916       -0.21223    1                    
MTRIX2   2 -0.000503 -0.999998 -0.001670       70.61587    1                    
MTRIX3   2  0.004917  0.001667 -0.999987       95.13131    1