HEADER IMMUNE SYSTEM 12-SEP-12 4BA8 TITLE HIGH RESOLUTION NMR STRUCTURE OF THE C MU3 DOMAIN FROM IGM COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG MU CHAIN C REGION SECRETED FORM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C MU3, RESIDUES 222-321; COMPND 5 SYNONYM: IMMUNOGLOBULIN M; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE SYSTEM, IMMUNOGLOBULIN CONSTANT REGION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.MUELLER,T.KERN,M.A.GRAEWERT,T.MADL,J.PESCHEK,M.GROLL,M.SATTLER, AUTHOR 2 J.BUCHNER REVDAT 3 14-JUN-23 4BA8 1 REMARK ATOM REVDAT 2 03-JUL-13 4BA8 1 JRNL REVDAT 1 12-JUN-13 4BA8 0 JRNL AUTH R.MUELLER,M.A.GRAEWERT,T.KERN,T.MADL,J.PESCHEK,M.SATTLER, JRNL AUTH 2 M.GROLL,J.BUCHNER JRNL TITL HIGH RESOLUTION STRUCTURES OF THE IGM FC DOMAINS REVEAL JRNL TITL 2 PRINCIPLES OF ITS HEXAMER FORMATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 10183 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23733956 JRNL DOI 10.1073/PNAS.1300547110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS-ARIA REMARK 3 AUTHORS : BRUNGER, ADAMS,CLORE,GROS,NILGES,READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE RESTRAINTS DERIVED FROM FROM REMARK 3 TALOS BASED ON SECONDARY CHEMICAL SHIFTS, AND RDC RESTRAINTS REMARK 3 WERE APPLIED FOR A WATER REFINEMENT CALCULATION USING A REMARK 3 SIMULATED ANNEALING PROTOCOL IN CNS. REMARK 4 REMARK 4 4BA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290054057. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 90% H20/10% D20, 20MM PHOSHATE REMARK 210 BUFFER, 50MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 13C HSQC; 15N NOESY; REMARK 210 13C NOESY ALIPHATICS; 13C NOESY REMARK 210 AROMATICS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS-ARIA, CYANA, NMRPIPE, REMARK 210 SPARKY, CCPNMR ANALYSIS 2. REMARK 210 METHOD USED : ARIA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 35 -80.92 -99.76 REMARK 500 1 VAL A 55 123.60 80.16 REMARK 500 1 ARG A 90 -11.79 65.08 REMARK 500 2 GLU A 35 -151.92 -140.48 REMARK 500 2 ARG A 90 -20.50 128.55 REMARK 500 3 THR A 33 -102.89 -92.42 REMARK 500 3 PRO A 60 42.11 -94.76 REMARK 500 4 ASP A 3 86.24 63.17 REMARK 500 4 GLU A 50 107.52 -56.78 REMARK 500 4 VAL A 55 112.25 68.56 REMARK 500 4 ASN A 61 80.76 56.87 REMARK 500 4 ARG A 90 -27.60 79.70 REMARK 500 5 VAL A 55 116.93 78.01 REMARK 500 5 ARG A 90 -3.84 74.15 REMARK 500 6 LYS A 20 -48.90 69.51 REMARK 500 6 TYR A 34 44.91 -95.26 REMARK 500 6 ARG A 90 -34.40 151.69 REMARK 500 7 GLU A 35 164.99 66.75 REMARK 500 7 THR A 36 60.74 64.50 REMARK 500 7 VAL A 55 105.88 70.89 REMARK 500 7 ASN A 61 42.64 152.02 REMARK 500 7 PHE A 64 -31.91 -134.86 REMARK 500 7 ARG A 90 -6.76 69.89 REMARK 500 8 LYS A 20 -10.65 70.79 REMARK 500 8 THR A 36 109.38 74.88 REMARK 500 8 VAL A 55 114.11 73.50 REMARK 500 8 MET A 56 8.77 -67.46 REMARK 500 8 ASN A 61 -79.78 -97.97 REMARK 500 8 ARG A 90 -33.94 144.89 REMARK 500 9 THR A 33 101.35 72.14 REMARK 500 9 TYR A 34 -21.07 173.36 REMARK 500 9 GLU A 35 38.26 -144.02 REMARK 500 9 THR A 36 155.34 48.40 REMARK 500 9 ASN A 38 175.55 163.45 REMARK 500 9 GLU A 50 107.22 -59.35 REMARK 500 9 VAL A 55 120.55 72.35 REMARK 500 9 ASN A 61 -84.68 -93.25 REMARK 500 10 TYR A 34 -73.81 -46.78 REMARK 500 10 THR A 36 36.99 -145.26 REMARK 500 10 VAL A 55 103.06 65.37 REMARK 500 10 ARG A 90 -20.75 71.14 REMARK 500 11 ASP A 3 127.71 69.31 REMARK 500 11 THR A 36 102.10 59.68 REMARK 500 11 VAL A 55 47.30 -76.56 REMARK 500 11 PRO A 60 138.24 -13.18 REMARK 500 11 ASN A 61 -160.80 70.26 REMARK 500 11 PHE A 64 -30.30 -133.02 REMARK 500 12 ASP A 3 117.35 63.52 REMARK 500 12 LYS A 20 -8.47 70.88 REMARK 500 12 PRO A 60 -134.01 -87.35 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18711 RELATED DB: BMRB DBREF 4BA8 A 3 102 UNP P01872 IGHM_MOUSE 222 321 SEQADV 4BA8 MET A 1 UNP P01872 EXPRESSION TAG SEQADV 4BA8 GLY A 2 UNP P01872 EXPRESSION TAG SEQADV 4BA8 VAL A 55 UNP P01872 ILE 274 CONFLICT SEQADV 4BA8 SER A 73 UNP P01872 CYS 292 ENGINEERED MUTATION SEQRES 1 A 102 MET GLY ASP ILE LEU THR PHE THR ILE PRO PRO SER PHE SEQRES 2 A 102 ALA ASP ILE PHE LEU SER LYS SER ALA ASN LEU THR CYS SEQRES 3 A 102 LEU VAL SER ASN LEU ALA THR TYR GLU THR LEU ASN ILE SEQRES 4 A 102 SER TRP ALA SER GLN SER GLY GLU PRO LEU GLU THR LYS SEQRES 5 A 102 ILE LYS VAL MET GLU SER HIS PRO ASN GLY THR PHE SER SEQRES 6 A 102 ALA LYS GLY VAL ALA SER VAL SER VAL GLU ASP TRP ASN SEQRES 7 A 102 ASN ARG LYS GLU PHE VAL CYS THR VAL THR HIS ARG ASP SEQRES 8 A 102 LEU PRO SER PRO GLN LYS LYS PHE ILE SER LYS HELIX 1 1 SER A 12 LYS A 20 1 9 HELIX 2 2 SER A 73 ASN A 79 1 7 SHEET 1 AA 4 LEU A 5 ILE A 9 0 SHEET 2 AA 4 ALA A 22 SER A 29 -1 O THR A 25 N ILE A 9 SHEET 3 AA 4 ALA A 66 VAL A 72 -1 O ALA A 66 N VAL A 28 SHEET 4 AA 4 THR A 51 LYS A 52 -1 O LYS A 52 N VAL A 69 SHEET 1 AB 3 ASN A 38 SER A 43 0 SHEET 2 AB 3 PHE A 83 THR A 88 -1 O VAL A 84 N ALA A 42 SHEET 3 AB 3 GLN A 96 ILE A 100 -1 O GLN A 96 N VAL A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1