HEADER LIPID BINDING PROTEIN 09-MAR-13 4BEG TITLE STRUCTURE OF RV2140C, A PHOSPHATIDYL-ETHANOLAMINE BINDING PROTEIN FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH SULPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UPF0098 PROTEIN RV2140C/MT2198; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETM-11 KEYWDS LIPID-BINDING PROTEIN, PEBP, RKIP, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HOLTON,M.WILLIAMS REVDAT 5 20-DEC-23 4BEG 1 REMARK REVDAT 4 17-JUL-19 4BEG 1 REMARK REVDAT 3 22-MAY-19 4BEG 1 REMARK REVDAT 2 25-SEP-13 4BEG 1 JRNL REVDAT 1 14-AUG-13 4BEG 0 JRNL AUTH G.EULENBURG,V.A.HIGMAN,A.DIEHL,M.WILMANNS,S.J.HOLTON JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RV2140C, A JRNL TITL 2 PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF FEBS LETT. V. 587 2936 2013 JRNL REFN ISSN 0014-5793 JRNL PMID 23907008 JRNL DOI 10.1016/J.FEBSLET.2013.07.038 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 67658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 3427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45700 REMARK 3 B22 (A**2) : 0.45700 REMARK 3 B33 (A**2) : -0.91300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.691 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2830 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3890 ; 2.017 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 6.562 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;30.356 ;23.153 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;11.078 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2242 ; 0.014 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2830 ; 7.082 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 119 ;23.027 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2972 ; 9.082 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 28.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.320 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.23 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BEF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 2.4 M AMMONIUM REMARK 280 SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.90000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.05900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.05900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.45000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.05900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.05900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.35000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.05900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.05900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.45000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.05900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.05900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 136.35000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -90.90000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 2 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB THR B 2 O HOH A 2059 8554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 149 CB ASP B 149 CG 0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 6 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 51 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 51 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 131 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 74 -33.80 99.14 REMARK 500 ALA A 122 64.15 -159.35 REMARK 500 LEU B 74 -33.52 96.53 REMARK 500 ALA B 122 66.84 -157.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1179 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BEF RELATED DB: PDB REMARK 900 STRUCTURE OF RV2140C, A PHOSPHATIDYL-ETHANOLAMINE BINDING PROTEIN REMARK 900 FROM MYCOBACTERIUM TUBERCULOSIS DBREF 4BEG A 1 176 UNP P67226 Y2140_MYCTU 1 176 DBREF 4BEG B 1 176 UNP P67226 Y2140_MYCTU 1 176 SEQADV 4BEG GLY A -1 UNP P67226 EXPRESSION TAG SEQADV 4BEG ALA A 0 UNP P67226 EXPRESSION TAG SEQADV 4BEG GLY B -1 UNP P67226 EXPRESSION TAG SEQADV 4BEG ALA B 0 UNP P67226 EXPRESSION TAG SEQRES 1 A 178 GLY ALA MET THR THR SER PRO ASP PRO TYR ALA ALA LEU SEQRES 2 A 178 PRO LYS LEU PRO SER PHE SER LEU THR SER THR SER ILE SEQRES 3 A 178 THR ASP GLY GLN PRO LEU ALA THR PRO GLN VAL SER GLY SEQRES 4 A 178 ILE MET GLY ALA GLY GLY ALA ASP ALA SER PRO GLN LEU SEQRES 5 A 178 ARG TRP SER GLY PHE PRO SER GLU THR ARG SER PHE ALA SEQRES 6 A 178 VAL THR VAL TYR ASP PRO ASP ALA PRO THR LEU SER GLY SEQRES 7 A 178 PHE TRP HIS TRP ALA VAL ALA ASN LEU PRO ALA ASN VAL SEQRES 8 A 178 THR GLU LEU PRO GLU GLY VAL GLY ASP GLY ARG GLU LEU SEQRES 9 A 178 PRO GLY GLY ALA LEU THR LEU VAL ASN ASP ALA GLY MET SEQRES 10 A 178 ARG ARG TYR VAL GLY ALA ALA PRO PRO PRO GLY HIS GLY SEQRES 11 A 178 VAL HIS ARG TYR TYR VAL ALA VAL HIS ALA VAL LYS VAL SEQRES 12 A 178 GLU LYS LEU ASP LEU PRO GLU ASP ALA SER PRO ALA TYR SEQRES 13 A 178 LEU GLY PHE ASN LEU PHE GLN HIS ALA ILE ALA ARG ALA SEQRES 14 A 178 VAL ILE PHE GLY THR TYR GLU GLN ARG SEQRES 1 B 178 GLY ALA MET THR THR SER PRO ASP PRO TYR ALA ALA LEU SEQRES 2 B 178 PRO LYS LEU PRO SER PHE SER LEU THR SER THR SER ILE SEQRES 3 B 178 THR ASP GLY GLN PRO LEU ALA THR PRO GLN VAL SER GLY SEQRES 4 B 178 ILE MET GLY ALA GLY GLY ALA ASP ALA SER PRO GLN LEU SEQRES 5 B 178 ARG TRP SER GLY PHE PRO SER GLU THR ARG SER PHE ALA SEQRES 6 B 178 VAL THR VAL TYR ASP PRO ASP ALA PRO THR LEU SER GLY SEQRES 7 B 178 PHE TRP HIS TRP ALA VAL ALA ASN LEU PRO ALA ASN VAL SEQRES 8 B 178 THR GLU LEU PRO GLU GLY VAL GLY ASP GLY ARG GLU LEU SEQRES 9 B 178 PRO GLY GLY ALA LEU THR LEU VAL ASN ASP ALA GLY MET SEQRES 10 B 178 ARG ARG TYR VAL GLY ALA ALA PRO PRO PRO GLY HIS GLY SEQRES 11 B 178 VAL HIS ARG TYR TYR VAL ALA VAL HIS ALA VAL LYS VAL SEQRES 12 B 178 GLU LYS LEU ASP LEU PRO GLU ASP ALA SER PRO ALA TYR SEQRES 13 B 178 LEU GLY PHE ASN LEU PHE GLN HIS ALA ILE ALA ARG ALA SEQRES 14 B 178 VAL ILE PHE GLY THR TYR GLU GLN ARG HET SO4 A1000 5 HET GOL A1177 6 HET GOL A1178 6 HET GOL A1179 6 HET SO4 B1000 5 HET GOL B1177 6 HET GOL B1178 6 HET GOL B1179 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 11 HOH *345(H2 O) HELIX 1 1 ALA A 31 GLN A 34 5 4 HELIX 2 2 SER A 151 HIS A 162 1 12 HELIX 3 3 ALA B 31 GLN B 34 5 4 HELIX 4 4 SER B 151 HIS B 162 1 12 SHEET 1 AA 3 SER A 18 THR A 20 0 SHEET 2 AA 3 LEU A 50 SER A 53 -1 O ARG A 51 N THR A 20 SHEET 3 AA 3 GLU A 91 LEU A 92 -1 O LEU A 92 N LEU A 50 SHEET 1 AB 5 LEU A 107 THR A 108 0 SHEET 2 AB 5 PHE A 77 PRO A 86 -1 O ALA A 83 N LEU A 107 SHEET 3 AB 5 SER A 61 ASP A 68 -1 O PHE A 62 N LEU A 85 SHEET 4 AB 5 VAL A 129 VAL A 139 -1 O TYR A 133 N TYR A 67 SHEET 5 AB 5 ALA A 163 GLU A 174 -1 N ILE A 164 O ALA A 138 SHEET 1 BA 3 SER B 18 THR B 20 0 SHEET 2 BA 3 LEU B 50 SER B 53 -1 O ARG B 51 N THR B 20 SHEET 3 BA 3 GLU B 91 LEU B 92 -1 O LEU B 92 N LEU B 50 SHEET 1 BB 6 GLN B 28 PRO B 29 0 SHEET 2 BB 6 ALA B 163 TYR B 173 1 N THR B 172 O GLN B 28 SHEET 3 BB 6 HIS B 130 VAL B 139 -1 O HIS B 130 N TYR B 173 SHEET 4 BB 6 SER B 61 ASP B 68 -1 O SER B 61 N VAL B 139 SHEET 5 BB 6 PHE B 77 PRO B 86 -1 O PHE B 77 N ASP B 68 SHEET 6 BB 6 LEU B 107 THR B 108 -1 O LEU B 107 N ALA B 83 SITE 1 AC1 10 HOH A2178 MET B 39 ASP B 68 PHE B 77 SITE 2 AC1 10 HIS B 79 ALA B 121 ALA B 122 PRO B 123 SITE 3 AC1 10 HIS B 130 TYR B 132 SITE 1 AC2 8 ASP A 68 PHE A 77 HIS A 79 ALA A 122 SITE 2 AC2 8 PRO A 123 HIS A 130 TYR A 132 HOH B2164 SITE 1 AC3 6 THR A 20 SER A 21 HOH A2045 GLY B 54 SITE 2 AC3 6 PHE B 55 HOH B2065 SITE 1 AC4 8 HOH A2080 ARG B 51 TRP B 52 SER B 53 SITE 2 AC4 8 THR B 90 HOH B2026 HOH B2030 HOH B2165 SITE 1 AC5 8 ALA A 10 LEU A 11 PRO A 12 LYS A 13 SITE 2 AC5 8 HOH A2031 HOH A2032 HOH A2179 HIS B 127 SITE 1 AC6 10 PRO A 12 LEU A 14 HIS A 137 LEU A 159 SITE 2 AC6 10 PHE A 160 ALA A 163 ARG A 166 HOH A2148 SITE 3 AC6 10 HOH A2165 HOH A2180 SITE 1 AC7 7 GLN A 49 GLU A 91 PRO A 93 GLU A 94 SITE 2 AC7 7 HOH A2049 ARG B 51 HOH B2092 SITE 1 AC8 8 TYR A 67 LEU A 74 SER A 75 GLY A 76 SITE 2 AC8 8 HOH A2093 TYR B 67 PRO B 69 HOH B2166 CRYST1 62.118 62.118 181.800 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005501 0.00000