HEADER TRANSFERASE 12-MAR-13 4BER TITLE CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA FIC DOMAIN-CONTAINING TITLE 2 EFFECTOR ANKX PROTEIN IN COMPLEX WITH CYTIDINE MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOCHOLINE TRANSFERASE ANKX; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIC AND ANKYRIN REPEATS DOMAINS, RESIDUES 2-484; COMPND 5 SYNONYM: PC TRANSFERASE, ANKYRIN REPEAT-CONTAINING PROTEIN X; COMPND 6 EC: 2.7.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 STRAIN: PHILADELPHIA 1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PDEST17 KEYWDS TRANSFERASE, TYPE IV SECRETION SYSTEM EFFECTOR EXPDTA X-RAY DIFFRACTION AUTHOR V.CAMPANACCI,S.MUKHERJEE,C.R.ROY,J.CHERFILS REVDAT 3 20-DEC-23 4BER 1 REMARK REVDAT 2 29-MAY-13 4BER 1 JRNL REVDAT 1 24-APR-13 4BER 0 JRNL AUTH V.CAMPANACCI,S.MUKHERJEE,C.R.ROY,J.CHERFILS JRNL TITL STRUCTURE OF THE LEGIONELLA EFFECTOR ANKX REVEALS THE JRNL TITL 2 MECHANISM OF PHOSPHOCHOLINE TRANSFER BY THE FIC DOMAIN. JRNL REF EMBO J. V. 32 1469 2013 JRNL REFN ISSN 0261-4189 JRNL PMID 23572077 JRNL DOI 10.1038/EMBOJ.2013.82 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2135 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3096 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2413 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2941 REMARK 3 BIN R VALUE (WORKING SET) : 0.2397 REMARK 3 BIN FREE R VALUE : 0.2704 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7578 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.65770 REMARK 3 B22 (A**2) : 15.29100 REMARK 3 B33 (A**2) : 1.36670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.405 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.424 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.259 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.434 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.264 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7850 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10633 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2772 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 216 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1120 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7850 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 992 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8968 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - 220 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.0464 50.1849 35.3732 REMARK 3 T TENSOR REMARK 3 T11: -0.2390 T22: -0.1365 REMARK 3 T33: 0.0047 T12: 0.0352 REMARK 3 T13: -0.0635 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.0649 L22: 3.1336 REMARK 3 L33: 2.1735 L12: -0.4997 REMARK 3 L13: -0.0012 L23: 0.5503 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.3395 S13: -0.0275 REMARK 3 S21: 0.3142 S22: 0.1311 S23: -0.7338 REMARK 3 S31: 0.0094 S32: 0.4401 S33: -0.0599 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|221 - 351 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.8916 47.4148 35.8588 REMARK 3 T TENSOR REMARK 3 T11: -0.1103 T22: -0.0621 REMARK 3 T33: -0.0448 T12: 0.0143 REMARK 3 T13: 0.0229 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.7586 L22: 3.5811 REMARK 3 L33: 2.3441 L12: -0.8168 REMARK 3 L13: 0.1983 L23: 1.0420 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.2379 S13: -0.2903 REMARK 3 S21: 0.2892 S22: -0.0488 S23: 0.0541 REMARK 3 S31: 0.0815 S32: -0.1453 S33: 0.0890 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|352 - 477 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.5912 33.1967 12.6934 REMARK 3 T TENSOR REMARK 3 T11: -0.0517 T22: -0.1268 REMARK 3 T33: -0.1129 T12: 0.0460 REMARK 3 T13: -0.0287 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.2802 L22: 6.2180 REMARK 3 L33: 2.0687 L12: 0.4988 REMARK 3 L13: -0.7498 L23: 2.4634 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: 0.2648 S13: 0.0917 REMARK 3 S21: -0.5883 S22: -0.1413 S23: 0.0796 REMARK 3 S31: -0.1350 S32: -0.2139 S33: 0.0519 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|1 - 220 } REMARK 3 ORIGIN FOR THE GROUP (A): -10.8662 89.0060 25.0206 REMARK 3 T TENSOR REMARK 3 T11: -0.0138 T22: -0.1515 REMARK 3 T33: -0.1632 T12: 0.0848 REMARK 3 T13: 0.0892 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.5216 L22: 3.2972 REMARK 3 L33: 1.4132 L12: -0.7047 REMARK 3 L13: 0.0456 L23: -0.3294 REMARK 3 S TENSOR REMARK 3 S11: -0.1091 S12: -0.1485 S13: -0.1682 REMARK 3 S21: 0.3923 S22: 0.1253 S23: 0.6607 REMARK 3 S31: -0.1714 S32: -0.3420 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|221 - 351 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.7911 92.2213 33.7162 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: -0.0955 REMARK 3 T33: -0.2577 T12: 0.0758 REMARK 3 T13: 0.0235 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.8648 L22: 3.3761 REMARK 3 L33: 1.8133 L12: -0.4028 REMARK 3 L13: -0.2520 L23: -0.5210 REMARK 3 S TENSOR REMARK 3 S11: -0.0863 S12: -0.3601 S13: 0.0635 REMARK 3 S21: 0.8910 S22: 0.0127 S23: -0.1077 REMARK 3 S31: -0.3416 S32: 0.1106 S33: 0.0736 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|352 - 479 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.2172 107.3920 13.6250 REMARK 3 T TENSOR REMARK 3 T11: -0.0254 T22: -0.1229 REMARK 3 T33: -0.1641 T12: 0.0317 REMARK 3 T13: 0.0071 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.7637 L22: 5.7027 REMARK 3 L33: 1.2768 L12: 1.3554 REMARK 3 L13: 0.7170 L23: -0.2323 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: -0.0622 S13: -0.0723 REMARK 3 S21: 0.0970 S22: -0.0145 S23: -0.3609 REMARK 3 S31: 0.1759 S32: 0.1173 S33: -0.0259 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4BER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BEP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 20000, 0.1 M TRIS PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 329 REMARK 465 ASP A 330 REMARK 465 PRO A 478 REMARK 465 GLU A 479 REMARK 465 LEU A 480 REMARK 465 ILE A 481 REMARK 465 SER A 482 REMARK 465 ALA A 483 REMARK 465 LEU A 484 REMARK 465 LYS B 86 REMARK 465 LYS B 87 REMARK 465 VAL B 88 REMARK 465 GLU B 89 REMARK 465 LEU B 480 REMARK 465 ILE B 481 REMARK 465 SER B 482 REMARK 465 ALA B 483 REMARK 465 LEU B 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 461 CG CD CE NZ REMARK 470 GLU B 479 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 95 86.18 41.49 REMARK 500 THR A 101 -71.21 -107.48 REMARK 500 ASN A 242 -73.66 -115.05 REMARK 500 ASN A 262 45.36 -90.90 REMARK 500 TYR A 351 59.73 39.68 REMARK 500 SER A 361 -14.24 -141.23 REMARK 500 GLN A 384 132.55 -38.15 REMARK 500 ASN B 95 87.24 41.28 REMARK 500 THR B 101 -85.80 -100.01 REMARK 500 ARG B 146 79.73 -118.53 REMARK 500 ASN B 242 -73.93 -114.43 REMARK 500 ASN B 262 49.08 -75.81 REMARK 500 ASP B 265 -55.55 -123.90 REMARK 500 ASP B 327 -126.55 -55.85 REMARK 500 TYR B 351 73.11 -150.35 REMARK 500 SER B 361 -14.41 -140.90 REMARK 500 GLN B 384 132.36 -38.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BEP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA FIC DOMAIN- REMARK 900 CONTAINING EFFECTOR ANKX PROTEIN (APO-FORM) REMARK 900 RELATED ID: 4BES RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA FIC DOMAIN- REMARK 900 CONTAINING EFFECTOR ANKX PROTEIN IN COMPLEX WITH CYTIDINE REMARK 900 MONOPHOSPHATE AND PHOSPHOCHOLINE REMARK 900 RELATED ID: 4BET RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA FIC DOMAIN- REMARK 900 CONTAINING EFFECTOR ANKX PROTEIN (INACTIVE H229A MUTANT) IN COMPLEX REMARK 900 WITH CYTIDINE-DIPHOSPHATE-CHOLINE DBREF 4BER A 2 484 UNP Q5ZXN6 ANKX_LEGPH 2 484 DBREF 4BER B 2 484 UNP Q5ZXN6 ANKX_LEGPH 2 484 SEQADV 4BER GLY A 1 UNP Q5ZXN6 EXPRESSION TAG SEQADV 4BER PRO A 247 UNP Q5ZXN6 LEU 247 ENGINEERED MUTATION SEQADV 4BER GLY B 1 UNP Q5ZXN6 EXPRESSION TAG SEQADV 4BER PRO B 247 UNP Q5ZXN6 LEU 247 ENGINEERED MUTATION SEQRES 1 A 484 GLY VAL LYS ILE MET PRO ASN LEU PRO GLY LEU TYR PHE SEQRES 2 A 484 LEU GLN ALA TYR PRO SER GLU GLU ILE TRP ARG LEU PHE SEQRES 3 A 484 VAL ASP GLY ARG PHE TRP SER LYS GLU ASN GLY TRP ARG SEQRES 4 A 484 GLY TYR GLU SER ARG GLU PRO GLY CYS LEU ASN ALA ALA SEQRES 5 A 484 LEU GLU SER LEU CYS SER ILE ALA LEU GLN VAL GLU LYS SEQRES 6 A 484 SER GLY GLU GLU PHE GLU LEU SER VAL ASP LEU ILE LYS SEQRES 7 A 484 ARG ILE HIS LYS LYS CYS GLY LYS LYS VAL GLU GLU LEU SEQRES 8 A 484 GLN GLU LYS ASN PRO GLY GLU LEU ARG THR ASP GLU PRO SEQRES 9 A 484 VAL SER PHE GLY ILE PRO ALA GLY ARG ALA SER ILE LYS SEQRES 10 A 484 GLY ILE GLU GLU PHE LEU SER LEU VAL PHE LEU THR GLU SEQRES 11 A 484 GLY GLY ALA GLU PHE GLY PRO GLY LYS ALA GLY PRO PHE SEQRES 12 A 484 GLY PRO ARG PHE ASP LYS ASN TYR PHE LYS ASN LEU ASN SEQRES 13 A 484 PRO GLU GLN ILE PRO ASP LEU ALA LYS GLN ILE TYR PHE SEQRES 14 A 484 ASP MET CYS LYS TYR GLY HIS SER ASN THR ASN HIS PHE SEQRES 15 A 484 TYR LEU ALA VAL MET LYS ASN VAL ASP VAL TYR LEU GLU SEQRES 16 A 484 LYS ILE THR GLN SER TYR ASN LYS GLU ILE LYS THR ALA SEQRES 17 A 484 GLU THR LEU ASP GLU LYS LEU LYS ILE ILE VAL LYS HIS SEQRES 18 A 484 ILE ARG MET TYR GLU VAL LEU HIS PRO PHE ARG ASP ALA SEQRES 19 A 484 ASN GLY ARG THR PHE VAL ASN ASN LEU LEU ASN ILE PRO SEQRES 20 A 484 LEU MET GLN GLN GLY LEU PRO PRO ALA THR PHE TYR GLU SEQRES 21 A 484 PRO ASN VAL PHE ASP LEU TYR SER ALA GLU GLU LEU VAL SEQRES 22 A 484 VAL VAL VAL LYS GLU ALA ILE PHE ASN THR VAL GLU ILE SEQRES 23 A 484 ILE GLU GLN SER LYS ARG LYS THR PRO ILE THR LEU TYR SEQRES 24 A 484 GLY TYR HIS SER SER LEU GLU GLU GLN THR LYS PHE ARG SEQRES 25 A 484 ASP MET LEU ASP SER PRO SER TYR GLU LYS ILE LYS HIS SEQRES 26 A 484 MET ASP PHE SER ASP LEU ASN PRO GLU LYS LEU HIS LEU SEQRES 27 A 484 LYS THR GLN LYS CYS LEU SER SER LEU ASN GLU GLN TYR SEQRES 28 A 484 PRO LEU HIS ARG GLY ALA ILE TYR LEU SER ASP PRO GLY SEQRES 29 A 484 GLU ILE LYS LEU LEU LEU SER ASN ARG ASN GLU SER GLN SEQRES 30 A 484 ILE ASN GLN GLN ILE GLU GLN GLY ALA PRO PRO ILE TYR SEQRES 31 A 484 VAL GLY LYS THR PRO ALA HIS LEU ALA VAL ILE SER GLY SEQRES 32 A 484 ASN MET ALA MET LEU ASP GLU LEU ILE ALA LYS LYS ALA SEQRES 33 A 484 ASP LEU SER LEU GLN ASP TYR ASP GLY LYS THR ALA LEU SEQRES 34 A 484 HIS TYR ALA ALA GLU CYS GLY ASN MET GLN ILE MET GLY SEQRES 35 A 484 LYS ILE LEU LYS VAL VAL LEU SER GLN GLU ASP ALA ILE SEQRES 36 A 484 LYS VAL LEU ASN ILE LYS ASP ASN HIS GLY LYS THR ALA SEQRES 37 A 484 PHE HIS TYR ALA ALA GLU PHE GLY THR PRO GLU LEU ILE SEQRES 38 A 484 SER ALA LEU SEQRES 1 B 484 GLY VAL LYS ILE MET PRO ASN LEU PRO GLY LEU TYR PHE SEQRES 2 B 484 LEU GLN ALA TYR PRO SER GLU GLU ILE TRP ARG LEU PHE SEQRES 3 B 484 VAL ASP GLY ARG PHE TRP SER LYS GLU ASN GLY TRP ARG SEQRES 4 B 484 GLY TYR GLU SER ARG GLU PRO GLY CYS LEU ASN ALA ALA SEQRES 5 B 484 LEU GLU SER LEU CYS SER ILE ALA LEU GLN VAL GLU LYS SEQRES 6 B 484 SER GLY GLU GLU PHE GLU LEU SER VAL ASP LEU ILE LYS SEQRES 7 B 484 ARG ILE HIS LYS LYS CYS GLY LYS LYS VAL GLU GLU LEU SEQRES 8 B 484 GLN GLU LYS ASN PRO GLY GLU LEU ARG THR ASP GLU PRO SEQRES 9 B 484 VAL SER PHE GLY ILE PRO ALA GLY ARG ALA SER ILE LYS SEQRES 10 B 484 GLY ILE GLU GLU PHE LEU SER LEU VAL PHE LEU THR GLU SEQRES 11 B 484 GLY GLY ALA GLU PHE GLY PRO GLY LYS ALA GLY PRO PHE SEQRES 12 B 484 GLY PRO ARG PHE ASP LYS ASN TYR PHE LYS ASN LEU ASN SEQRES 13 B 484 PRO GLU GLN ILE PRO ASP LEU ALA LYS GLN ILE TYR PHE SEQRES 14 B 484 ASP MET CYS LYS TYR GLY HIS SER ASN THR ASN HIS PHE SEQRES 15 B 484 TYR LEU ALA VAL MET LYS ASN VAL ASP VAL TYR LEU GLU SEQRES 16 B 484 LYS ILE THR GLN SER TYR ASN LYS GLU ILE LYS THR ALA SEQRES 17 B 484 GLU THR LEU ASP GLU LYS LEU LYS ILE ILE VAL LYS HIS SEQRES 18 B 484 ILE ARG MET TYR GLU VAL LEU HIS PRO PHE ARG ASP ALA SEQRES 19 B 484 ASN GLY ARG THR PHE VAL ASN ASN LEU LEU ASN ILE PRO SEQRES 20 B 484 LEU MET GLN GLN GLY LEU PRO PRO ALA THR PHE TYR GLU SEQRES 21 B 484 PRO ASN VAL PHE ASP LEU TYR SER ALA GLU GLU LEU VAL SEQRES 22 B 484 VAL VAL VAL LYS GLU ALA ILE PHE ASN THR VAL GLU ILE SEQRES 23 B 484 ILE GLU GLN SER LYS ARG LYS THR PRO ILE THR LEU TYR SEQRES 24 B 484 GLY TYR HIS SER SER LEU GLU GLU GLN THR LYS PHE ARG SEQRES 25 B 484 ASP MET LEU ASP SER PRO SER TYR GLU LYS ILE LYS HIS SEQRES 26 B 484 MET ASP PHE SER ASP LEU ASN PRO GLU LYS LEU HIS LEU SEQRES 27 B 484 LYS THR GLN LYS CYS LEU SER SER LEU ASN GLU GLN TYR SEQRES 28 B 484 PRO LEU HIS ARG GLY ALA ILE TYR LEU SER ASP PRO GLY SEQRES 29 B 484 GLU ILE LYS LEU LEU LEU SER ASN ARG ASN GLU SER GLN SEQRES 30 B 484 ILE ASN GLN GLN ILE GLU GLN GLY ALA PRO PRO ILE TYR SEQRES 31 B 484 VAL GLY LYS THR PRO ALA HIS LEU ALA VAL ILE SER GLY SEQRES 32 B 484 ASN MET ALA MET LEU ASP GLU LEU ILE ALA LYS LYS ALA SEQRES 33 B 484 ASP LEU SER LEU GLN ASP TYR ASP GLY LYS THR ALA LEU SEQRES 34 B 484 HIS TYR ALA ALA GLU CYS GLY ASN MET GLN ILE MET GLY SEQRES 35 B 484 LYS ILE LEU LYS VAL VAL LEU SER GLN GLU ASP ALA ILE SEQRES 36 B 484 LYS VAL LEU ASN ILE LYS ASP ASN HIS GLY LYS THR ALA SEQRES 37 B 484 PHE HIS TYR ALA ALA GLU PHE GLY THR PRO GLU LEU ILE SEQRES 38 B 484 SER ALA LEU HET C5P A1000 35 HET PO4 A2000 5 HET PO4 A2001 5 HET GOL A3000 14 HET C5P B1000 35 HET PO4 B2000 5 HET PO4 B2001 5 HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 C5P 2(C9 H14 N3 O8 P) FORMUL 4 PO4 4(O4 P 3-) FORMUL 6 GOL C3 H8 O3 FORMUL 10 HOH *73(H2 O) HELIX 1 1 GLY A 10 TYR A 17 1 8 HELIX 2 2 PRO A 18 PHE A 26 5 9 HELIX 3 3 ASP A 28 ARG A 30 5 3 HELIX 4 4 PHE A 31 ASN A 36 1 6 HELIX 5 5 TRP A 38 GLU A 45 1 8 HELIX 6 6 GLY A 47 SER A 66 1 20 HELIX 7 7 SER A 73 CYS A 84 1 12 HELIX 8 8 VAL A 88 GLU A 93 1 6 HELIX 9 9 PRO A 110 ARG A 113 5 4 HELIX 10 10 SER A 115 LEU A 125 1 11 HELIX 11 11 LEU A 125 GLY A 131 1 7 HELIX 12 12 ASN A 156 GLU A 158 5 3 HELIX 13 13 GLN A 159 GLY A 175 1 17 HELIX 14 14 ASN A 189 THR A 207 1 19 HELIX 15 15 THR A 210 LEU A 228 1 19 HELIX 16 16 ALA A 234 VAL A 240 1 7 HELIX 17 17 LEU A 244 GLN A 251 1 8 HELIX 18 18 SER A 268 ARG A 292 1 25 HELIX 19 19 THR A 297 TYR A 301 5 5 HELIX 20 20 SER A 304 LEU A 315 1 12 HELIX 21 21 SER A 317 HIS A 325 1 9 HELIX 22 22 PRO A 333 SER A 345 1 13 HELIX 23 23 SER A 346 ASN A 348 5 3 HELIX 24 24 TYR A 351 LEU A 360 1 10 HELIX 25 25 ASP A 362 SER A 371 1 10 HELIX 26 26 ASN A 374 ASN A 379 1 6 HELIX 27 27 THR A 394 GLY A 403 1 10 HELIX 28 28 ASN A 404 LYS A 414 1 11 HELIX 29 29 THR A 427 CYS A 435 1 9 HELIX 30 30 ASN A 437 LEU A 449 1 13 HELIX 31 31 ASP A 453 ASN A 459 1 7 HELIX 32 32 THR A 467 GLU A 474 1 8 HELIX 33 33 GLY B 10 TYR B 17 1 8 HELIX 34 34 PRO B 18 PHE B 26 5 9 HELIX 35 35 ASP B 28 ARG B 30 5 3 HELIX 36 36 PHE B 31 ASN B 36 1 6 HELIX 37 37 TRP B 38 GLU B 45 1 8 HELIX 38 38 GLY B 47 SER B 66 1 20 HELIX 39 39 SER B 73 CYS B 84 1 12 HELIX 40 40 LEU B 91 ASN B 95 5 5 HELIX 41 41 PRO B 110 ARG B 113 5 4 HELIX 42 42 SER B 115 LEU B 125 1 11 HELIX 43 43 LEU B 125 GLY B 131 1 7 HELIX 44 44 ASN B 156 GLU B 158 5 3 HELIX 45 45 GLN B 159 GLY B 175 1 17 HELIX 46 46 ASN B 189 THR B 207 1 19 HELIX 47 47 THR B 210 LEU B 228 1 19 HELIX 48 48 ALA B 234 VAL B 240 1 7 HELIX 49 49 LEU B 244 GLN B 251 1 8 HELIX 50 50 SER B 268 ARG B 292 1 25 HELIX 51 51 THR B 297 TYR B 301 5 5 HELIX 52 52 SER B 304 LEU B 315 1 12 HELIX 53 53 SER B 317 HIS B 325 1 9 HELIX 54 54 PRO B 333 SER B 345 1 13 HELIX 55 55 TYR B 351 LEU B 360 1 10 HELIX 56 56 ASP B 362 SER B 371 1 10 HELIX 57 57 ASN B 374 ASN B 379 1 6 HELIX 58 58 THR B 394 GLY B 403 1 10 HELIX 59 59 ASN B 404 LYS B 414 1 11 HELIX 60 60 THR B 427 CYS B 435 1 9 HELIX 61 61 ASN B 437 LEU B 449 1 13 HELIX 62 62 ASP B 453 ASN B 459 1 7 HELIX 63 63 THR B 467 ALA B 473 1 7 SHEET 1 AA 2 VAL A 2 ILE A 4 0 SHEET 2 AA 2 VAL B 2 ILE B 4 -1 O LYS B 3 N LYS A 3 SHEET 1 AB 4 SER A 106 ILE A 109 0 SHEET 2 AB 4 HIS A 181 LEU A 184 -1 O HIS A 181 N ILE A 109 SHEET 3 AB 4 GLU A 134 LYS A 139 -1 O GLU A 134 N LEU A 184 SHEET 4 AB 4 ARG A 146 PHE A 147 -1 O ARG A 146 N LYS A 139 SHEET 1 BA 4 SER B 106 ILE B 109 0 SHEET 2 BA 4 HIS B 181 LEU B 184 -1 O HIS B 181 N ILE B 109 SHEET 3 BA 4 GLU B 134 LYS B 139 -1 O GLU B 134 N LEU B 184 SHEET 4 BA 4 ARG B 146 PHE B 147 -1 O ARG B 146 N LYS B 139 SITE 1 AC1 14 ASP A 28 ARG A 30 PHE A 31 TYR A 41 SITE 2 AC1 14 ARG A 44 CYS A 48 ASP A 233 ALA A 234 SITE 3 AC1 14 ASN A 235 GLY A 236 ARG A 237 PRO A 261 SITE 4 AC1 14 ASN A 262 PO4 A2000 SITE 1 AC2 5 PHE A 107 GLU A 226 ASN A 262 ASP A 265 SITE 2 AC2 5 C5P A1000 SITE 1 AC3 5 THR A 297 ILE A 358 LEU A 360 SER A 402 SITE 2 AC3 5 ASN A 404 SITE 1 AC4 6 TYR A 259 GLU A 260 VAL A 275 GLU A 278 SITE 2 AC4 6 ALA A 279 PRO A 388 SITE 1 AC5 14 ASP B 28 ARG B 30 PHE B 31 TYR B 41 SITE 2 AC5 14 ARG B 44 CYS B 48 ASP B 233 ALA B 234 SITE 3 AC5 14 ASN B 235 GLY B 236 ARG B 237 PRO B 261 SITE 4 AC5 14 ASN B 262 PO4 B2000 SITE 1 AC6 3 GLU B 226 ASN B 262 C5P B1000 SITE 1 AC7 4 SER B 106 GLY B 141 PRO B 145 PHE B 182 CRYST1 58.330 103.560 224.100 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004462 0.00000