HEADER TRANSFERASE 12-MAR-13 4BEU TITLE STRUCTURE OF VIBRIO CHOLERAE BROAD SPECTRUM RACEMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BROAD SPECTRUM RACEMASE BSRV; COMPND 5 EC: 5.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 ATCC: 39315; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CARRASCO-LOPEZ,J.A.HERMOSO REVDAT 5 20-DEC-23 4BEU 1 REMARK REVDAT 4 15-JAN-20 4BEU 1 LINK ATOM REVDAT 3 09-JUL-14 4BEU 1 JRNL REVDAT 2 22-JAN-14 4BEU 1 JRNL REVDAT 1 15-JAN-14 4BEU 0 JRNL AUTH A.ESPAILLAT,C.CARRASCO-LOPEZ,N.BERNARDO-GARCIA, JRNL AUTH 2 N.PIETROSEMOLI,L.H.OTERO,L.ALVAREZ,M.A.DE PEDRO,F.PAZOS, JRNL AUTH 3 B.M.DAVIS,M.K.WALDOR,J.A.HERMOSO,F.CAVA JRNL TITL STRUCTURAL BASIS FOR THE BROAD SPECIFICITY OF A NEW FAMILY JRNL TITL 2 OF AMINO-ACID RACEMASES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 79 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24419381 JRNL DOI 10.1107/S1399004713024838 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 128114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 9209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4389 - 3.5728 1.00 4182 306 0.1692 0.1681 REMARK 3 2 3.5728 - 2.8360 1.00 4072 305 0.1599 0.1678 REMARK 3 3 2.8360 - 2.4775 1.00 4077 303 0.1634 0.1778 REMARK 3 4 2.4775 - 2.2510 1.00 4060 306 0.1500 0.1527 REMARK 3 5 2.2510 - 2.0897 1.00 4019 332 0.1501 0.1576 REMARK 3 6 2.0897 - 1.9664 1.00 4029 299 0.1498 0.1665 REMARK 3 7 1.9664 - 1.8680 1.00 4067 307 0.1538 0.1646 REMARK 3 8 1.8680 - 1.7866 0.99 3967 330 0.1557 0.1679 REMARK 3 9 1.7866 - 1.7179 1.00 4014 320 0.1541 0.1670 REMARK 3 10 1.7179 - 1.6586 1.00 3954 345 0.1551 0.1705 REMARK 3 11 1.6586 - 1.6067 1.00 4004 340 0.1577 0.1673 REMARK 3 12 1.6067 - 1.5608 1.00 3999 292 0.1556 0.1771 REMARK 3 13 1.5608 - 1.5197 1.00 4043 315 0.1583 0.1726 REMARK 3 14 1.5197 - 1.4826 0.98 3930 319 0.1584 0.1643 REMARK 3 15 1.4826 - 1.4489 0.99 3977 319 0.1579 0.1760 REMARK 3 16 1.4489 - 1.4181 1.00 4024 269 0.1596 0.1643 REMARK 3 17 1.4181 - 1.3897 1.00 4007 306 0.1637 0.1887 REMARK 3 18 1.3897 - 1.3635 1.00 4014 306 0.1733 0.1777 REMARK 3 19 1.3635 - 1.3391 1.00 3981 301 0.1705 0.1724 REMARK 3 20 1.3391 - 1.3164 1.00 4017 323 0.1700 0.1885 REMARK 3 21 1.3164 - 1.2952 0.98 3942 292 0.1806 0.2039 REMARK 3 22 1.2952 - 1.2753 0.98 3884 293 0.1893 0.2009 REMARK 3 23 1.2753 - 1.2565 0.99 4008 296 0.1872 0.1882 REMARK 3 24 1.2565 - 1.2388 0.99 3945 305 0.1842 0.2034 REMARK 3 25 1.2388 - 1.2221 0.99 3965 331 0.1951 0.2165 REMARK 3 26 1.2221 - 1.2062 1.00 4032 287 0.1972 0.2100 REMARK 3 27 1.2062 - 1.1911 1.00 3987 297 0.1955 0.2159 REMARK 3 28 1.1911 - 1.1768 0.99 4004 317 0.2021 0.2321 REMARK 3 29 1.1768 - 1.1631 0.89 3482 282 0.2098 0.2197 REMARK 3 30 1.1631 - 1.1500 0.80 3219 266 0.2157 0.2171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.47 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 63.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25580 REMARK 3 B22 (A**2) : 1.21610 REMARK 3 B33 (A**2) : -0.96030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.69530 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3140 REMARK 3 ANGLE : 1.325 4270 REMARK 3 CHIRALITY : 0.075 487 REMARK 3 PLANARITY : 0.008 559 REMARK 3 DIHEDRAL : 13.202 1167 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290055393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95994 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2RJG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE PH 7.5, 0.2 M REMARK 280 SODIUM IODIDE, 20% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.31050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.54650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.31050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.54650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2251 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2434 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2509 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 409 H GLY A 410 1.46 REMARK 500 NZ LYS A 74 H4A PLP A 1416 1.51 REMARK 500 HZ3 LYS A 185 O HOH A 2280 1.56 REMARK 500 OE1 GLN A 155 O HOH A 2249 1.81 REMARK 500 O HOH A 2056 O HOH A 2146 1.97 REMARK 500 O HOH A 2485 O HOH A 2486 2.00 REMARK 500 NE2 GLN A 53 O HOH A 2067 2.01 REMARK 500 O HOH A 2213 O HOH A 2432 2.04 REMARK 500 OE2 GLU A 116 O HOH A 2101 2.05 REMARK 500 O HOH A 2241 O HOH A 2490 2.05 REMARK 500 NZ LYS A 185 O HOH A 2280 2.06 REMARK 500 O HOH A 2048 O HOH A 2049 2.08 REMARK 500 O HOH A 2016 O HOH A 2018 2.09 REMARK 500 O HOH A 2096 O HOH A 2205 2.10 REMARK 500 OE1 GLN A 371 O HOH A 2477 2.12 REMARK 500 O HOH A 2229 O HOH A 2230 2.12 REMARK 500 O HOH A 2114 O HOH A 2254 2.12 REMARK 500 O HOH A 2131 O HOH A 2274 2.13 REMARK 500 O HOH A 2480 O HOH A 2485 2.14 REMARK 500 O HOH A 2074 O HOH A 2143 2.15 REMARK 500 O HOH A 2347 O HOH A 2351 2.16 REMARK 500 NE2 GLN A 39 O HOH A 2030 2.16 REMARK 500 O HOH A 2100 O HOH A 2211 2.17 REMARK 500 O HOH A 2036 O HOH A 2037 2.18 REMARK 500 O HOH A 2025 O HOH A 2513 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2074 O HOH A 2239 4545 2.01 REMARK 500 O HOH A 2359 O HOH A 2514 4555 2.07 REMARK 500 O HOH A 2151 O HOH A 2406 2555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 173 -88.19 -126.50 REMARK 500 SER A 195 4.49 80.69 REMARK 500 LEU A 256 -136.41 50.20 REMARK 500 LYS A 329 -54.52 -128.01 REMARK 500 GLN A 373 -122.54 49.52 REMARK 500 SER A 409 -126.42 -171.81 REMARK 500 HIS A 412 59.69 36.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2098 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BE4 RELATED DB: PDB REMARK 900 CLOSED CONFORMATION OF O. PICEAE STEROL ESTERASE REMARK 900 RELATED ID: 4BE9 RELATED DB: PDB REMARK 900 OPEN CONFORMATION OF O. PICEAE STEROL ESTERASE REMARK 900 RELATED ID: 4BEQ RELATED DB: PDB REMARK 900 STRUCTURE OF VIBRIO CHOLERAE BROAD SPECTRUM RACEMASE DOUBLE MUTANT REMARK 900 R173A, N174A DBREF 4BEU A 24 407 UNP D0H7Y0 D0H7Y0_VIBCL 24 407 SEQADV 4BEU SER A 408 UNP D0H7Y0 EXPRESSION TAG SEQADV 4BEU SER A 409 UNP D0H7Y0 EXPRESSION TAG SEQADV 4BEU GLY A 410 UNP D0H7Y0 EXPRESSION TAG SEQADV 4BEU HIS A 411 UNP D0H7Y0 EXPRESSION TAG SEQADV 4BEU HIS A 412 UNP D0H7Y0 EXPRESSION TAG SEQADV 4BEU HIS A 413 UNP D0H7Y0 EXPRESSION TAG SEQADV 4BEU HIS A 414 UNP D0H7Y0 EXPRESSION TAG SEQADV 4BEU HIS A 415 UNP D0H7Y0 EXPRESSION TAG SEQRES 1 A 392 ALA PRO LEU HIS ILE ASP THR ALA LEU PRO ASP ALA ALA SEQRES 2 A 392 GLN ILE GLN GLN SER ASN SER TRP LEU GLU ILE SER LEU SEQRES 3 A 392 GLY GLN PHE GLN SER ASN ILE GLU GLN PHE LYS SER HIS SEQRES 4 A 392 MET ASN ALA ASN THR LYS ILE CYS ALA ILE MET LYS ALA SEQRES 5 A 392 ASP ALA TYR GLY ASN GLY ILE ARG GLY LEU MET PRO THR SEQRES 6 A 392 ILE ILE ALA GLN GLY ILE PRO CYS VAL GLY VAL ALA SER SEQRES 7 A 392 ASN ALA GLU ALA ARG ALA VAL ARG GLU SER GLY PHE LYS SEQRES 8 A 392 GLY GLU LEU ILE ARG VAL ARG SER ALA SER LEU SER GLU SEQRES 9 A 392 MET SER SER ALA LEU ASP LEU ASN ILE GLU GLU LEU ILE SEQRES 10 A 392 GLY THR HIS GLN GLN ALA LEU ASP LEU ALA GLU LEU ALA SEQRES 11 A 392 LYS GLN SER GLY LYS THR LEU LYS VAL HIS ILE ALA LEU SEQRES 12 A 392 ASN ASP GLY GLY MET GLY ARG ASN GLY ILE ASP MET THR SEQRES 13 A 392 THR GLU ALA GLY LYS LYS GLU ALA VAL SER ILE ALA THR SEQRES 14 A 392 GLN PRO SER LEU SER VAL VAL GLY ILE MET THR HIS PHE SEQRES 15 A 392 PRO ASN TYR ASN ALA ASP GLU VAL ARG ALA LYS LEU ALA SEQRES 16 A 392 GLN PHE LYS GLU SER SER THR TRP LEU MET GLN GLN ALA SEQRES 17 A 392 ASN LEU LYS ARG GLU GLU ILE THR LEU HIS VAL ALA ASN SEQRES 18 A 392 SER TYR THR ALA LEU ASN VAL PRO GLU ALA GLN LEU ASP SEQRES 19 A 392 MET VAL ARG PRO GLY GLY VAL LEU PHE GLY ASP LEU PRO SEQRES 20 A 392 THR ASN PRO GLU TYR PRO SER ILE VAL SER PHE LYS THR SEQRES 21 A 392 ARG VAL SER SER LEU HIS HIS LEU PRO LYS ASP SER THR SEQRES 22 A 392 VAL GLY TYR ASP SER THR PHE THR THR SER ARG ASP SER SEQRES 23 A 392 VAL LEU ALA ASN LEU PRO VAL GLY TYR SER ASP GLY TYR SEQRES 24 A 392 PRO ARG LYS MET GLY ASN LYS ALA GLU VAL LEU ILE ASN SEQRES 25 A 392 GLY GLN ARG ALA LYS VAL VAL GLY VAL THR SER MET ASN SEQRES 26 A 392 THR THR VAL VAL ASP VAL THR GLU ILE LYS GLY VAL LEU SEQRES 27 A 392 PRO GLY GLN GLU VAL VAL LEU PHE GLY GLN GLN GLN LYS SEQRES 28 A 392 GLN SER ILE ALA VAL SER GLU MET GLU ASN ASN ALA GLU SEQRES 29 A 392 LEU ILE PHE PRO GLU LEU TYR THR LEU TRP GLY THR SER SEQRES 30 A 392 ASN PRO ARG PHE TYR VAL LYS SER SER GLY HIS HIS HIS SEQRES 31 A 392 HIS HIS HET CL A1001 1 HET PLP A1416 23 HETNAM CL CHLORIDE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 CL CL 1- FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 HOH *518(H2 O) HELIX 1 1 ASP A 34 GLN A 40 1 7 HELIX 2 2 LEU A 49 SER A 61 1 13 HELIX 3 3 MET A 73 GLY A 79 1 7 HELIX 4 4 GLY A 81 GLN A 92 1 12 HELIX 5 5 SER A 101 SER A 111 1 11 HELIX 6 6 SER A 124 ALA A 131 1 8 HELIX 7 7 LEU A 132 ASN A 135 5 4 HELIX 8 8 THR A 142 GLY A 157 1 16 HELIX 9 9 THR A 180 THR A 192 1 13 HELIX 10 10 ASN A 209 ALA A 231 1 23 HELIX 11 11 LYS A 234 ILE A 238 5 5 HELIX 12 12 ASN A 244 VAL A 251 1 8 HELIX 13 13 PRO A 252 GLN A 255 5 4 HELIX 14 14 GLY A 298 THR A 302 5 5 HELIX 15 15 GLY A 317 GLY A 321 5 5 HELIX 16 16 PRO A 323 GLY A 327 5 5 HELIX 17 17 ALA A 378 GLU A 387 1 10 HELIX 18 18 ILE A 389 ASN A 401 1 13 SHEET 1 AA 6 GLN A 337 LYS A 340 0 SHEET 2 AA 6 GLU A 331 ILE A 334 -1 O VAL A 332 N ALA A 339 SHEET 3 AA 6 GLU A 365 PHE A 369 -1 O VAL A 367 N LEU A 333 SHEET 4 AA 6 VAL A 279 ARG A 284 -1 O PHE A 281 N LEU A 368 SHEET 5 AA 6 SER A 43 SER A 48 -1 O TRP A 44 N LYS A 282 SHEET 6 AA 6 ARG A 403 VAL A 406 1 O PHE A 404 N ILE A 47 SHEET 1 AB 3 CYS A 70 ILE A 72 0 SHEET 2 AB 3 CYS A 96 VAL A 99 1 O CYS A 96 N ALA A 71 SHEET 3 AB 3 GLU A 116 ARG A 119 1 O GLU A 116 N VAL A 97 SHEET 1 AC 5 GLU A 138 ILE A 140 0 SHEET 2 AC 5 LEU A 160 ALA A 165 1 O LYS A 161 N GLU A 138 SHEET 3 AC 5 LEU A 196 MET A 202 1 O SER A 197 N VAL A 162 SHEET 4 AC 5 THR A 239 ALA A 243 1 O THR A 239 N ILE A 201 SHEET 5 AC 5 MET A 258 VAL A 259 1 O MET A 258 N ALA A 243 SHEET 1 AD 3 SER A 287 LEU A 291 0 SHEET 2 AD 3 SER A 309 LEU A 314 -1 O SER A 309 N LEU A 291 SHEET 3 AD 3 THR A 350 ASP A 353 -1 O THR A 350 N LEU A 314 SHEET 1 AE 2 THR A 296 VAL A 297 0 SHEET 2 AE 2 PHE A 303 THR A 304 -1 O PHE A 303 N VAL A 297 SHEET 1 AF 2 GLN A 371 GLN A 372 0 SHEET 2 AF 2 GLN A 375 SER A 376 -1 O GLN A 375 N GLN A 372 SSBOND 1 CYS A 70 CYS A 96 1555 1555 2.14 LINK NZ LYS A 74 C4A PLP A1416 1555 1555 1.29 SITE 1 AC1 2 ARG A 173 ASN A 174 SITE 1 AC2 15 LYS A 74 TYR A 78 ARG A 173 HIS A 204 SITE 2 AC2 15 ASN A 244 SER A 245 ARG A 260 GLY A 262 SITE 3 AC2 15 GLY A 263 HOH A2188 HOH A2300 HOH A2304 SITE 4 AC2 15 HOH A2305 HOH A2354 HOH A2397 CRYST1 96.621 51.093 76.731 90.00 101.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010350 0.000000 0.002040 0.00000 SCALE2 0.000000 0.019572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013283 0.00000