HEADER TRANSFERASE 18-MAR-13 4BFC TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL CMP-KDO BINDING DOMAIN OF WAAA TITLE 2 FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CMP-KDO BINDING DOMAIN, RESIDUES 220-430; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSSETTA2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET19B KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.R.KIMBUNG,M.HAKANSSON,D.LOGAN,P.F.WANG,M.SCHULZ,U.MAMAT,R.W.WOODARD REVDAT 4 20-DEC-23 4BFC 1 REMARK REVDAT 3 17-JAN-18 4BFC 1 REMARK REVDAT 2 08-APR-15 4BFC 1 TITLE REVDAT 1 02-APR-14 4BFC 0 JRNL AUTH Y.R.KIMBUNG,M.HAKANSSON,D.LOGAN,P.F.WANG,M.SCHULZ,U.MAMAT, JRNL AUTH 2 R.W.WOODARD JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL CMP-KDO BINDING DOMAIN JRNL TITL 2 OF WAAA FROM ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.83000 REMARK 3 B22 (A**2) : -9.83000 REMARK 3 B33 (A**2) : 19.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.013 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.014 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.229 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1624 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1624 ; 0.019 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2223 ; 1.885 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2223 ; 1.885 ; 1.937 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 6.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;41.174 ;25.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 264 ;13.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.105 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1264 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.585 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.415 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. HYDROGENS HAVE BEEN REMARK 3 USED IF PRESENT IN THE INPUT SIDE CHAINS WITH POOR ELECTRON REMARK 3 DENSITY WERE MODELED WITH LOWER OCCUPANCY. MULTIPLE CONFORMERS REMARK 3 WERE MODELED WITH LOWER OCCUPANCY ADDING UP TO 1. REMARK 4 REMARK 4 4BFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.041 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MAR165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35057 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.770 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XCI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE BUFFER PH 6.0, 0.2 MM REMARK 280 LITHIUM SULPHATE AND 17 TO 23 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.18500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.86107 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.44667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 55.18500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 31.86107 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.44667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 55.18500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 31.86107 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.44667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.72215 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.89333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 63.72215 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.89333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 63.72215 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.89333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 196 REMARK 465 GLY A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 GLY A 210 REMARK 465 HIS A 211 REMARK 465 ILE A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 ASP A 216 REMARK 465 LYS A 217 REMARK 465 ASN A 411 REMARK 465 GLN A 412 REMARK 465 GLY A 413 REMARK 465 SER A 414 REMARK 465 LEU A 415 REMARK 465 GLN A 416 REMARK 465 LYS A 417 REMARK 465 HIS A 418 REMARK 465 ILE A 419 REMARK 465 GLY A 420 REMARK 465 VAL A 421 REMARK 465 ILE A 422 REMARK 465 ASN A 423 REMARK 465 ARG A 424 REMARK 465 TYR A 425 REMARK 465 LEU A 426 REMARK 465 ALA A 427 REMARK 465 GLU A 428 REMARK 465 LYS A 429 REMARK 465 SER A 430 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 218 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 219 CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 223 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 277 O HOH A 2060 1.59 REMARK 500 O HOH A 2071 O HOH A 2075 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 223 CB - CG - CD ANGL. DEV. = -24.6 DEGREES REMARK 500 ASP A 385 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2135 DISTANCE = 6.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 602 DBREF 4BFC A 220 430 UNP K5F2Z1 K5F2Z1_ACIBA 220 430 SEQADV 4BFC MET A 196 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC GLY A 197 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 198 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 199 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 200 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 201 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 202 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 203 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 204 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 205 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 206 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 207 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC SER A 208 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC SER A 209 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC GLY A 210 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 211 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC ILE A 212 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC ASP A 213 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC ASP A 214 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC ASP A 215 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC ASP A 216 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC LYS A 217 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC HIS A 218 UNP K5F2Z1 EXPRESSION TAG SEQADV 4BFC MET A 219 UNP K5F2Z1 EXPRESSION TAG SEQRES 1 A 235 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 235 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET ALA PHE SEQRES 3 A 235 ILE LYS GLN ALA ALA GLN LEU HIS GLN GLN TRP TYR LEU SEQRES 4 A 235 GLU ASN ARG GLN VAL VAL THR ILE ALA SER THR HIS ALA SEQRES 5 A 235 PRO GLU GLU GLN GLN ILE LEU GLU ALA LEU ALA PRO TYR SEQRES 6 A 235 LEU ASN SER ASP ARG LYS LEU VAL CYS ILE VAL VAL PRO SEQRES 7 A 235 ARG HIS PRO GLU ARG PHE ASP GLU VAL PHE GLU ILE CYS SEQRES 8 A 235 GLN ASN LEU ASN LEU ILE THR HIS ARG ARG SER MET GLY SEQRES 9 A 235 GLN SER ILE HIS ALA SER THR GLN VAL TYR LEU ALA ASP SEQRES 10 A 235 SER MET GLY GLU LEU TRP LEU TRP TYR ALA LEU SER GLN SEQRES 11 A 235 VAL CYS PHE VAL GLY GLY SER LEU ASN GLU PRO GLY GLY SEQRES 12 A 235 GLY HIS ASN ILE LEU GLU PRO MET VAL LEU ASN VAL PRO SEQRES 13 A 235 THR VAL VAL GLY PRO ARG TYR PHE ASN PHE GLN THR ILE SEQRES 14 A 235 VAL ASP GLU PHE ILE ASP GLU ASN ALA VAL LEU ILE ALA SEQRES 15 A 235 GLN ASP ALA GLN GLN VAL VAL ASP ILE TRP LEU ALA CYS SEQRES 16 A 235 LEU ALA GLU PRO GLU ALA THR GLU GLN LEU VAL ALA GLN SEQRES 17 A 235 ALA HIS LYS VAL LEU GLN ARG ASN GLN GLY SER LEU GLN SEQRES 18 A 235 LYS HIS ILE GLY VAL ILE ASN ARG TYR LEU ALA GLU LYS SEQRES 19 A 235 SER HET SO4 A 500 5 HET BME A 601 4 HET BME A 602 4 HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 SO4 O4 S 2- FORMUL 3 BME 2(C2 H6 O S) FORMUL 5 HOH *186(H2 O) HELIX 1 1 HIS A 218 TRP A 232 1 15 HELIX 2 2 TYR A 233 ARG A 237 5 5 HELIX 3 3 PRO A 248 ASP A 264 1 17 HELIX 4 4 HIS A 275 GLU A 277 5 3 HELIX 5 5 ARG A 278 LEU A 289 1 12 HELIX 6 6 SER A 297 GLY A 299 5 3 HELIX 7 7 GLU A 316 SER A 324 1 9 HELIX 8 8 ILE A 342 LEU A 348 1 7 HELIX 9 9 TYR A 358 ASN A 360 5 3 HELIX 10 10 PHE A 361 GLU A 371 1 11 HELIX 11 11 ASP A 379 GLU A 393 1 15 HELIX 12 12 GLU A 393 ARG A 410 1 18 SHEET 1 AA 7 THR A 293 ARG A 295 0 SHEET 2 AA 7 VAL A 308 LEU A 310 1 O VAL A 308 N HIS A 294 SHEET 3 AA 7 LEU A 267 PRO A 273 1 O CYS A 269 N TYR A 309 SHEET 4 AA 7 GLN A 238 THR A 245 1 O GLN A 238 N VAL A 268 SHEET 5 AA 7 VAL A 326 VAL A 329 1 O VAL A 326 N THR A 241 SHEET 6 AA 7 THR A 352 VAL A 354 1 O VAL A 353 N VAL A 329 SHEET 7 AA 7 LEU A 375 ILE A 376 1 O LEU A 375 N VAL A 354 CISPEP 1 ALA A 247 PRO A 248 0 6.32 CISPEP 2 GLU A 335 PRO A 336 0 2.01 SITE 1 AC1 8 HIS A 246 ARG A 274 HIS A 275 HIS A 340 SITE 2 AC1 8 HOH A2054 HOH A2055 HOH A2187 HOH A2188 SITE 1 AC2 2 CYS A 390 GLU A 393 SITE 1 AC3 3 ARG A 274 PRO A 276 GLU A 277 CRYST1 110.370 110.370 70.340 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009060 0.005231 0.000000 0.00000 SCALE2 0.000000 0.010462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014217 0.00000