HEADER TRANSFERASE 22-MAR-13 4BG4 TITLE CRYSTAL STRUCTURE OF LITOPENAEUS VANNAMEI ARGININE KINASE IN A TERNARY TITLE 2 ANALOG COMPLEX WITH ARGININE, ADP-MG AND NO3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.3.3; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ARGININE KINASE; COMPND 7 CHAIN: B; COMPND 8 EC: 2.7.3.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 3 ORGANISM_COMMON: PACIFIC WHITE SHRIMP; SOURCE 4 ORGANISM_TAXID: 6689; SOURCE 5 TISSUE: TAIL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 8 ORGANISM_COMMON: PACIFIC WHITE SHRIMP; SOURCE 9 ORGANISM_TAXID: 6689; SOURCE 10 TISSUE: TAIL MUSCLE KEYWDS TRANSFERASE, BINARY COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.LOPEZ-ZAVALA,K.D.GARCIA-OROZCO,J.S.CARRASCO-MIRANDA,R.SUGICH- AUTHOR 2 MIRANDA,E.F.VELAZQUEZ-CONTRERAS,M.F.CRISCITIELLO,L.GBRIEBA,E.RUDINO- AUTHOR 3 PINERA,R.R.SOTELO-MUNDO REVDAT 4 20-DEC-23 4BG4 1 REMARK LINK REVDAT 3 08-MAY-19 4BG4 1 REMARK LINK REVDAT 2 27-NOV-13 4BG4 1 JRNL REVDAT 1 04-SEP-13 4BG4 0 JRNL AUTH A.A.LOPEZ-ZAVALA,K.D.GARCIA-OROZCO,J.S.CARRASCO-MIRANDA, JRNL AUTH 2 R.SUGICH-MIRANDA,E.F.VELAZQUEZ-CONTRERAS,M.F.CRISCITIELLO, JRNL AUTH 3 L.G.BRIEBA,E.RUDINO-PINERA,R.R.SOTELO-MUNDO JRNL TITL CRYSTAL STRUCTURE OF SHRIMP ARGININE KINASE IN BINARY JRNL TITL 2 COMPLEX WITH ARGININE-A MOLECULAR VIEW OF THE PHOSPHAGEN JRNL TITL 3 PRECURSOR BINDING TO THE ENZYME. JRNL REF J.BIOENERG.BIOMEMBR. V. 45 511 2013 JRNL REFN ISSN 0145-479X JRNL PMID 23873077 JRNL DOI 10.1007/S10863-013-9521-0 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 86199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.8475 - 4.9161 0.99 2796 141 0.1756 0.1760 REMARK 3 2 4.9161 - 3.9258 0.99 2776 157 0.1391 0.1400 REMARK 3 3 3.9258 - 3.4366 1.00 2724 179 0.1661 0.1892 REMARK 3 4 3.4366 - 3.1256 1.00 2777 149 0.1864 0.2167 REMARK 3 5 3.1256 - 2.9034 1.00 2755 146 0.1977 0.2163 REMARK 3 6 2.9034 - 2.7333 1.00 2728 151 0.1920 0.2213 REMARK 3 7 2.7333 - 2.5972 1.00 2772 138 0.1879 0.2221 REMARK 3 8 2.5972 - 2.4847 1.00 2725 151 0.1855 0.2603 REMARK 3 9 2.4847 - 2.3894 1.00 2757 153 0.1761 0.2174 REMARK 3 10 2.3894 - 2.3073 1.00 2728 143 0.1753 0.2220 REMARK 3 11 2.3073 - 2.2354 0.99 2733 146 0.1858 0.2134 REMARK 3 12 2.2354 - 2.1717 0.99 2742 140 0.1803 0.1990 REMARK 3 13 2.1717 - 2.1147 1.00 2697 154 0.1847 0.2300 REMARK 3 14 2.1147 - 2.0632 0.99 2714 154 0.1844 0.2288 REMARK 3 15 2.0632 - 2.0164 1.00 2733 145 0.1863 0.2591 REMARK 3 16 2.0164 - 1.9736 0.99 2773 112 0.1909 0.2404 REMARK 3 17 1.9736 - 1.9342 1.00 2763 115 0.1908 0.2296 REMARK 3 18 1.9342 - 1.8978 0.99 2727 142 0.2013 0.2411 REMARK 3 19 1.8978 - 1.8640 1.00 2705 151 0.1979 0.2415 REMARK 3 20 1.8640 - 1.8324 0.99 2735 138 0.2097 0.2621 REMARK 3 21 1.8324 - 1.8029 0.99 2727 128 0.2199 0.2688 REMARK 3 22 1.8029 - 1.7752 1.00 2739 132 0.2261 0.2645 REMARK 3 23 1.7752 - 1.7492 0.99 2705 144 0.2342 0.2610 REMARK 3 24 1.7492 - 1.7246 0.99 2681 166 0.2416 0.3208 REMARK 3 25 1.7246 - 1.7013 0.99 2749 143 0.2562 0.3276 REMARK 3 26 1.7013 - 1.6792 0.99 2674 146 0.2536 0.3022 REMARK 3 27 1.6792 - 1.6583 0.99 2719 136 0.2540 0.3319 REMARK 3 28 1.6583 - 1.6383 0.99 2686 155 0.2632 0.2993 REMARK 3 29 1.6383 - 1.6193 0.99 2701 122 0.2796 0.3277 REMARK 3 30 1.6193 - 1.6011 0.95 2636 145 0.3016 0.3517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 36.77 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14880 REMARK 3 B22 (A**2) : 0.26070 REMARK 3 B33 (A**2) : -0.11190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06920 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6027 REMARK 3 ANGLE : 1.206 8142 REMARK 3 CHIRALITY : 0.074 873 REMARK 3 PLANARITY : 0.005 1063 REMARK 3 DIHEDRAL : 16.661 2288 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86201 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 14.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.360 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 14.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AM1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 0.2 M REMARK 280 SODIUM ACETATE, 0.1 M SODIUM CACODYLATE AND 30 % (W/V) PEG 8000 REMARK 280 PH 6.5 AT 289 K USING HANGING DROP METHOD., VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.57500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 470 MET B 1 CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 91 106.55 -15.50 REMARK 500 VAL A 91 106.55 34.52 REMARK 500 ASP A 114 79.82 -167.25 REMARK 500 GLU A 224 -119.65 -82.05 REMARK 500 VAL B 91 94.44 43.74 REMARK 500 ASN B 101 150.50 -49.66 REMARK 500 ASP B 114 80.38 -164.06 REMARK 500 GLU B 190 65.15 -68.33 REMARK 500 GLU B 224 -116.63 -81.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 190 -12.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2034 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B2058 DISTANCE = 5.97 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BETA-MERCAPTOETHANOL (BME): BME A 409 COVALENT BOND TO REMARK 600 CYS A 139, AND BME B 406 COVALENT BOND TO CYS B 139 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 400 O1A REMARK 620 2 ADP A 400 O1B 87.4 REMARK 620 3 NO3 A 405 O1 88.6 83.4 REMARK 620 4 HOH A2272 O 168.5 92.8 102.9 REMARK 620 5 HOH A2273 O 83.5 101.1 170.7 85.1 REMARK 620 6 HOH A2314 O 88.8 163.0 80.0 94.2 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 400 O1B REMARK 620 2 ADP B 400 O1A 89.5 REMARK 620 3 NO3 B 405 O1 83.3 88.2 REMARK 620 4 HOH B2210 O 99.8 81.3 169.0 REMARK 620 5 HOH B2211 O 89.4 165.0 106.5 84.2 REMARK 620 6 HOH B2245 O 168.9 93.1 86.0 91.2 90.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 407 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS DESCRIBED IN GARCIA-OROZCO ETL AL. (2007) REMARK 999 INT. ARCH. ALLERGY IMMUNOL. 144, P.23-28 DBREF 4BG4 A 1 356 UNP Q004B5 Q004B5_LITVA 1 356 DBREF 4BG4 B 1 356 UNP Q004B5 Q004B5_LITVA 1 356 SEQADV 4BG4 LYS A 43 UNP Q004B5 ARG 43 CONFLICT SEQADV 4BG4 MET A 131 UNP Q004B5 LEU 131 CONFLICT SEQADV 4BG4 SER A 200 UNP Q004B5 ALA 200 CONFLICT SEQADV 4BG4 ARG B 24 UNP Q004B5 LYS 24 CONFLICT SEQADV 4BG4 ASP B 34 UNP Q004B5 GLU 34 CONFLICT SEQADV 4BG4 LYS B 43 UNP Q004B5 ARG 43 CONFLICT SEQADV 4BG4 MET B 131 UNP Q004B5 LEU 131 CONFLICT SEQRES 1 A 356 MET ALA ASP ALA ALA VAL ILE GLU LYS LEU GLU ALA GLY SEQRES 2 A 356 PHE LYS LYS LEU GLU ALA ALA THR ASP CYS LYS SER LEU SEQRES 3 A 356 LEU LYS LYS TYR LEU THR LYS GLU VAL PHE ASP LYS LEU SEQRES 4 A 356 LYS ASP LYS LYS THR SER LEU GLY ALA THR LEU LEU ASP SEQRES 5 A 356 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 A 356 GLY ILE TYR ALA PRO ASP ALA GLU ALA TYR THR LEU PHE SEQRES 7 A 356 ALA PRO LEU PHE ASP PRO ILE ILE GLU ASP TYR HIS VAL SEQRES 8 A 356 GLY PHE LYS GLN THR ASP LYS HIS PRO ASN LYS ASP PHE SEQRES 9 A 356 GLY ASP VAL ASN SER PHE VAL ASN VAL ASP PRO GLU GLY SEQRES 10 A 356 LYS PHE VAL ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 A 356 MET GLN GLY TYR PRO PHE ASN PRO CYS LEU THR GLU SER SEQRES 12 A 356 GLN TYR LYS GLU MET GLU ALA LYS VAL SER SER THR LEU SEQRES 13 A 356 SER SER LEU GLU GLY GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 A 356 LEU THR GLY MET SER LYS GLU VAL GLN GLN LYS LEU ILE SEQRES 15 A 356 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 A 356 GLN ALA ALA ASN SER CSO ARG TYR TRP PRO ALA GLY ARG SEQRES 17 A 356 GLY ILE TYR HIS ASN ASP ASN LYS THR PHE LEU VAL TRP SEQRES 18 A 356 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 A 356 MET GLY GLY ASP LEU GLY GLN VAL PHE ARG ARG LEU THR SEQRES 20 A 356 SER ALA VAL ASN GLU ILE GLU LYS ARG ILE PRO PHE SER SEQRES 21 A 356 HIS HIS ASP ARG LEU GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 A 356 ASN LEU GLY THR THR VAL ARG ALA SER VAL HIS ILE LYS SEQRES 23 A 356 LEU PRO LYS LEU ALA ALA ASN ARG GLU LYS LEU GLU GLU SEQRES 24 A 356 VAL ALA GLY LYS TYR ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 A 356 GLY GLU HIS THR GLU ALA GLU GLY GLY ILE TYR ASP ILE SEQRES 26 A 356 SER ASN LYS ARG ARG MET GLY LEU THR GLU PHE GLN ALA SEQRES 27 A 356 VAL LYS GLU MET GLN ASP GLY ILE LEU GLU LEU ILE LYS SEQRES 28 A 356 ILE GLU LYS GLU MET SEQRES 1 B 356 MET ALA ASP ALA ALA VAL ILE GLU LYS LEU GLU ALA GLY SEQRES 2 B 356 PHE LYS LYS LEU GLU ALA ALA THR ASP CYS ARG SER LEU SEQRES 3 B 356 LEU LYS LYS TYR LEU THR LYS ASP VAL PHE ASP LYS LEU SEQRES 4 B 356 LYS ASP LYS LYS THR SER LEU GLY ALA THR LEU LEU ASP SEQRES 5 B 356 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 B 356 GLY ILE TYR ALA PRO ASP ALA GLU ALA TYR THR LEU PHE SEQRES 7 B 356 ALA PRO LEU PHE ASP PRO ILE ILE GLU ASP TYR HIS VAL SEQRES 8 B 356 GLY PHE LYS GLN THR ASP LYS HIS PRO ASN LYS ASP PHE SEQRES 9 B 356 GLY ASP VAL ASN SER PHE VAL ASN VAL ASP PRO GLU GLY SEQRES 10 B 356 LYS PHE VAL ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 B 356 MET GLN GLY TYR PRO PHE ASN PRO CYS LEU THR GLU SER SEQRES 12 B 356 GLN TYR LYS GLU MET GLU ALA LYS VAL SER SER THR LEU SEQRES 13 B 356 SER SER LEU GLU GLY GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 B 356 LEU THR GLY MET SER LYS GLU VAL GLN GLN LYS LEU ILE SEQRES 15 B 356 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 B 356 GLN ALA ALA ASN ALA CSO ARG TYR TRP PRO ALA GLY ARG SEQRES 17 B 356 GLY ILE TYR HIS ASN ASP ASN LYS THR PHE LEU VAL TRP SEQRES 18 B 356 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 B 356 MET GLY GLY ASP LEU GLY GLN VAL PHE ARG ARG LEU THR SEQRES 20 B 356 SER ALA VAL ASN GLU ILE GLU LYS ARG ILE PRO PHE SER SEQRES 21 B 356 HIS HIS ASP ARG LEU GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 B 356 ASN LEU GLY THR THR VAL ARG ALA SER VAL HIS ILE LYS SEQRES 23 B 356 LEU PRO LYS LEU ALA ALA ASN ARG GLU LYS LEU GLU GLU SEQRES 24 B 356 VAL ALA GLY LYS TYR ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 B 356 GLY GLU HIS THR GLU ALA GLU GLY GLY ILE TYR ASP ILE SEQRES 26 B 356 SER ASN LYS ARG ARG MET GLY LEU THR GLU PHE GLN ALA SEQRES 27 B 356 VAL LYS GLU MET GLN ASP GLY ILE LEU GLU LEU ILE LYS SEQRES 28 B 356 ILE GLU LYS GLU MET MODRES 4BG4 CSO A 201 CYS S-HYDROXYCYSTEINE MODRES 4BG4 CSO B 201 CYS S-HYDROXYCYSTEINE HET CSO A 201 7 HET CSO B 201 7 HET ADP A 400 27 HET ARG A 403 12 HET NO3 A 405 4 HET MG A 406 1 HET BME A 409 4 HET ADP B 400 27 HET ARG B 403 12 HET NO3 B 405 4 HET BME B 406 4 HET MG B 407 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ARG ARGININE HETNAM NO3 NITRATE ION HETNAM MG MAGNESIUM ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 ARG 2(C6 H15 N4 O2 1+) FORMUL 5 NO3 2(N O3 1-) FORMUL 6 MG 2(MG 2+) FORMUL 7 BME 2(C2 H6 O S) FORMUL 13 HOH *584(H2 O) HELIX 1 1 ASP A 3 ALA A 20 1 18 HELIX 2 2 SER A 25 LEU A 31 1 7 HELIX 3 3 THR A 32 LYS A 40 1 9 HELIX 4 4 THR A 49 ASN A 60 1 12 HELIX 5 5 ASP A 71 PHE A 78 1 8 HELIX 6 6 PHE A 78 HIS A 90 1 13 HELIX 7 7 ASP A 106 PHE A 110 5 5 HELIX 8 8 PHE A 136 LEU A 140 5 5 HELIX 9 9 THR A 141 SER A 157 1 17 HELIX 10 10 GLU A 160 LYS A 164 5 5 HELIX 11 11 SER A 174 ASP A 184 1 11 HELIX 12 12 ASP A 192 ALA A 198 1 7 HELIX 13 13 ASP A 238 LYS A 255 1 18 HELIX 14 14 CYS A 271 LEU A 275 5 5 HELIX 15 15 LYS A 289 ALA A 292 5 4 HELIX 16 16 ASN A 293 TYR A 304 1 12 HELIX 17 17 THR A 334 MET A 356 1 23 HELIX 18 18 ASP B 3 ALA B 20 1 18 HELIX 19 19 SER B 25 LEU B 31 1 7 HELIX 20 20 THR B 32 LYS B 40 1 9 HELIX 21 21 LEU B 50 ASN B 60 1 11 HELIX 22 22 ALA B 72 PHE B 78 1 7 HELIX 23 23 PHE B 78 HIS B 90 1 13 HELIX 24 24 ASP B 106 PHE B 110 5 5 HELIX 25 25 PHE B 136 LEU B 140 5 5 HELIX 26 26 THR B 141 SER B 157 1 17 HELIX 27 27 GLU B 160 LYS B 164 5 5 HELIX 28 28 SER B 174 ASP B 184 1 11 HELIX 29 29 ASP B 192 ALA B 198 1 7 HELIX 30 30 ASP B 238 LYS B 255 1 18 HELIX 31 31 CYS B 271 LEU B 275 5 5 HELIX 32 32 LEU B 287 ALA B 292 1 6 HELIX 33 33 ASN B 293 TYR B 304 1 12 HELIX 34 34 THR B 334 GLU B 355 1 22 SHEET 1 AA 8 THR A 166 PRO A 169 0 SHEET 2 AA 8 GLY A 209 HIS A 212 -1 O ILE A 210 N TYR A 168 SHEET 3 AA 8 PHE A 218 VAL A 222 -1 O VAL A 220 N TYR A 211 SHEET 4 AA 8 LEU A 228 MET A 235 -1 O ARG A 229 N TRP A 221 SHEET 5 AA 8 VAL A 120 ARG A 129 -1 O THR A 123 N GLN A 234 SHEET 6 AA 8 ARG A 280 LYS A 286 -1 O ARG A 280 N ARG A 126 SHEET 7 AA 8 ILE A 322 ASN A 327 -1 O TYR A 323 N ILE A 285 SHEET 8 AA 8 LEU A 306 ARG A 309 -1 O GLN A 307 N SER A 326 SHEET 1 AB 2 HIS A 261 HIS A 262 0 SHEET 2 AB 2 GLY A 266 PHE A 267 -1 O GLY A 266 N HIS A 262 SHEET 1 BA 8 THR B 166 PRO B 169 0 SHEET 2 BA 8 GLY B 209 HIS B 212 -1 O ILE B 210 N TYR B 168 SHEET 3 BA 8 PHE B 218 VAL B 222 -1 O VAL B 220 N TYR B 211 SHEET 4 BA 8 LEU B 228 MET B 235 -1 O ARG B 229 N TRP B 221 SHEET 5 BA 8 VAL B 120 ARG B 129 -1 O THR B 123 N GLN B 234 SHEET 6 BA 8 ARG B 280 LYS B 286 -1 O ARG B 280 N ARG B 126 SHEET 7 BA 8 ILE B 322 ASN B 327 -1 O TYR B 323 N ILE B 285 SHEET 8 BA 8 LEU B 306 ARG B 309 -1 O GLN B 307 N SER B 326 SHEET 1 BB 2 HIS B 261 HIS B 262 0 SHEET 2 BB 2 GLY B 266 PHE B 267 -1 O GLY B 266 N HIS B 262 LINK SG CYS A 139 S2 BME A 409 1555 1555 1.99 LINK C SER A 200 N CSO A 201 1555 1555 1.33 LINK C CSO A 201 N ARG A 202 1555 1555 1.33 LINK C ALA B 200 N CSO B 201 1555 1555 1.33 LINK C CSO B 201 N ARG B 202 1555 1555 1.33 LINK O1A ADP A 400 MG MG A 406 1555 1555 2.29 LINK O1B ADP A 400 MG MG A 406 1555 1555 2.20 LINK O1 NO3 A 405 MG MG A 406 1555 1555 2.31 LINK MG MG A 406 O HOH A2272 1555 1555 2.34 LINK MG MG A 406 O HOH A2273 1555 1555 2.43 LINK MG MG A 406 O HOH A2314 1555 1555 2.33 LINK O1B ADP B 400 MG MG B 407 1555 1555 2.23 LINK O1A ADP B 400 MG MG B 407 1555 1555 2.30 LINK O1 NO3 B 405 MG MG B 407 1555 1555 2.36 LINK MG MG B 407 O HOH B2210 1555 1555 2.44 LINK MG MG B 407 O HOH B2211 1555 1555 2.41 LINK MG MG B 407 O HOH B2245 1555 1555 2.37 CISPEP 1 TRP A 204 PRO A 205 0 2.94 CISPEP 2 TRP A 204 PRO A 205 0 2.44 CISPEP 3 MET B 1 ALA B 2 0 6.19 CISPEP 4 TRP B 204 PRO B 205 0 4.28 SITE 1 AC1 24 SER A 122 ARG A 124 ARG A 126 HIS A 185 SITE 2 AC1 24 TRP A 221 ARG A 229 MET A 233 ARG A 280 SITE 3 AC1 24 SER A 282 VAL A 283 HIS A 284 ARG A 309 SITE 4 AC1 24 THR A 311 ARG A 312 GLY A 313 GLU A 314 SITE 5 AC1 24 ASP A 324 NO3 A 405 MG A 406 HOH A2167 SITE 6 AC1 24 HOH A2233 HOH A2242 HOH A2297 HOH A2330 SITE 1 AC2 12 SER A 63 GLY A 64 VAL A 65 GLY A 66 SITE 2 AC2 12 TYR A 68 GLU A 225 CYS A 271 GLU A 314 SITE 3 AC2 12 NO3 A 405 HOH A2077 HOH A2091 HOH A2316 SITE 1 AC3 11 ARG A 126 GLU A 225 ARG A 229 ASN A 274 SITE 2 AC3 11 ARG A 309 GLU A 314 ADP A 400 ARG A 403 SITE 3 AC3 11 MG A 406 HOH A2295 HOH A2314 SITE 1 AC4 5 ADP A 400 NO3 A 405 HOH A2272 HOH A2273 SITE 2 AC4 5 HOH A2314 SITE 1 AC5 4 LEU A 46 ASP A 52 PRO A 138 CYS A 139 SITE 1 AC6 24 SER B 122 ARG B 124 ARG B 126 HIS B 185 SITE 2 AC6 24 TRP B 221 ARG B 229 MET B 233 ARG B 280 SITE 3 AC6 24 SER B 282 VAL B 283 HIS B 284 ARG B 309 SITE 4 AC6 24 THR B 311 ARG B 312 GLY B 313 GLU B 314 SITE 5 AC6 24 ASP B 324 NO3 B 405 MG B 407 HOH B2179 SITE 6 AC6 24 HOH B2185 HOH B2210 HOH B2213 HOH B2254 SITE 1 AC7 13 SER B 63 GLY B 64 VAL B 65 GLY B 66 SITE 2 AC7 13 TYR B 68 GLU B 225 CYS B 271 THR B 273 SITE 3 AC7 13 GLU B 314 NO3 B 405 HOH B2062 HOH B2076 SITE 4 AC7 13 HOH B2247 SITE 1 AC8 10 ARG B 126 GLU B 225 ARG B 229 ASN B 274 SITE 2 AC8 10 ARG B 309 GLU B 314 ADP B 400 ARG B 403 SITE 3 AC8 10 MG B 407 HOH B2228 SITE 1 AC9 2 ASP B 52 CYS B 139 SITE 1 BC1 5 ADP B 400 NO3 B 405 HOH B2210 HOH B2211 SITE 2 BC1 5 HOH B2245 CRYST1 63.320 67.150 78.770 90.00 92.12 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015793 0.000000 0.000585 0.00000 SCALE2 0.000000 0.014892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012704 0.00000