HEADER HYDROLASE 15-APR-13 4BJ0 TITLE XYLOGLUCAN BINDING MODULE (CBM4-2 X2-L110F) IN COMPLEX WITH BRANCHED TITLE 2 XYLOSES COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTHERMUS MARINUS; SOURCE 3 ORGANISM_TAXID: 29549; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: T7 EXPRESS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS HYDROLASE, XYLOGLUCAN, CBM4-2, X2 L110F, CH-PI INTERACTION, KEYWDS 2 ENGINEERED CONSTRUCT EXPDTA X-RAY DIFFRACTION AUTHOR L.SCHANTZ,M.HAKANSSON,D.T.LOGAN,E.NORDBERG-KARLSSON,M.OHLIN REVDAT 6 20-DEC-23 4BJ0 1 HETSYN REVDAT 5 29-JUL-20 4BJ0 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 17-JAN-18 4BJ0 1 JRNL REMARK REVDAT 3 03-DEC-14 4BJ0 1 JRNL REVDAT 2 29-OCT-14 4BJ0 1 JRNL REVDAT 1 23-APR-14 4BJ0 0 JRNL AUTH L.VON SCHANTZ,M.HAKANSSON,D.T.LOGAN,E.NORDBERG-KARLSSON, JRNL AUTH 2 M.OHLIN JRNL TITL CARBOHYDRATE BINDING MODULE RECOGNITION OF XYLOGLUCAN JRNL TITL 2 DEFINED BY POLAR CONTACTS WITH BRANCHING XYLOSES AND CH-PI JRNL TITL 3 INTERACTIONS. JRNL REF PROTEINS V. 82 3466 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 25302425 JRNL DOI 10.1002/PROT.24700 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 76023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.129 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4040 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5228 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.020 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.012 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.981 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1481 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2034 ; 0.017 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2055 ; 2.238 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3476 ; 1.747 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 7.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;34.999 ;25.139 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 204 ;11.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.608 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.298 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1711 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 341 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 884 ; 2.375 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1000 ; 1.700 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1460 ; 3.543 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 597 ; 4.738 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 580 ; 6.709 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3515 ; 1.913 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS AND REFINED INDIVIDUALLY REMARK 4 REMARK 4 4BJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : GERMANIUM CRYSTALS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Y6H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % W/V PEG 1500, 0.1 M MMT BUFFER PH REMARK 280 5.5, 20 MM SPERMINE, 8 MM XXXG REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.89000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2183 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 169 REMARK 465 LEU A 170 REMARK 465 GLU A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 168 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2068 O HOH A 2123 2.08 REMARK 500 O HOH A 2301 O HOH A 2302 2.13 REMARK 500 O HOH A 2272 O HOH A 2274 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2241 O HOH A 2272 3455 1.84 REMARK 500 OE1 GLN A 96 NE2 GLN A 96 2555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 3 CB VAL A 3 CG1 -0.158 REMARK 500 GLU A 52 CB GLU A 52 CG -0.185 REMARK 500 GLU A 52 CG GLU A 52 CD 0.133 REMARK 500 GLU A 95 CD GLU A 95 OE2 -0.068 REMARK 500 SER A 109 CA SER A 109 CB 0.093 REMARK 500 GLU A 112 CD GLU A 112 OE2 -0.077 REMARK 500 ARG A 142 CZ ARG A 142 NH1 0.114 REMARK 500 ARG A 142 CZ ARG A 142 NH2 -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 3 CG1 - CB - CG2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 20 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 GLU A 23 OE1 - CD - OE2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 29 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 97 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 136 -167.09 -119.33 REMARK 500 ILE A 141 -167.32 -121.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2022 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2316 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1167 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 9 O REMARK 620 2 GLU A 11 OE2 80.0 REMARK 620 3 GLU A 52 OE2 88.9 89.3 REMARK 620 4 GLU A 52 O 157.9 82.3 77.7 REMARK 620 5 LYS A 55 O 86.4 86.0 173.9 105.5 REMARK 620 6 ASP A 160 OD1 77.0 156.7 94.0 121.0 88.8 REMARK 620 7 ASP A 160 OD2 127.0 148.1 106.0 74.2 80.0 52.0 REMARK 620 N 1 2 3 4 5 6 DBREF 4BJ0 A 2 166 UNP Q6V8M0 Q6V8M0_RHOMR 1 165 SEQADV 4BJ0 LEU A 167 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 ALA A 168 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 ALA A 169 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 LEU A 170 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 GLU A 171 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 HIS A 172 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 HIS A 173 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 HIS A 174 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 HIS A 175 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 HIS A 176 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 HIS A 177 UNP Q6V8M0 EXPRESSION TAG SEQADV 4BJ0 PHE A 69 UNP Q6V8M0 TRP 68 ENGINEERED MUTATION SEQADV 4BJ0 ASN A 70 UNP Q6V8M0 ASP 69 ENGINEERED MUTATION SEQADV 4BJ0 GLN A 72 UNP Q6V8M0 GLU 71 ENGINEERED MUTATION SEQADV 4BJ0 LEU A 76 UNP Q6V8M0 PHE 75 ENGINEERED MUTATION SEQADV 4BJ0 ARG A 91 UNP Q6V8M0 TRP 90 ENGINEERED MUTATION SEQADV 4BJ0 ASP A 111 UNP Q6V8M0 GLN 110 ENGINEERED MUTATION SEQADV 4BJ0 HIS A 118 UNP Q6V8M0 GLU 117 ENGINEERED MUTATION SEQRES 1 A 176 LEU VAL ALA ASN ILE ASN GLY GLY PHE GLU SER THR PRO SEQRES 2 A 176 ALA GLY VAL VAL THR ASP LEU ALA GLU GLY VAL GLU GLY SEQRES 3 A 176 TRP ASP LEU ASN VAL GLY SER SER VAL THR ASN PRO PRO SEQRES 4 A 176 VAL PHE GLU VAL LEU GLU THR SER ASP ALA PRO GLU GLY SEQRES 5 A 176 ASN LYS VAL LEU ALA VAL THR VAL ASN GLY VAL GLY ASN SEQRES 6 A 176 ASN PRO PHE ASN ILE GLN ALA THR ALA LEU PRO VAL ASN SEQRES 7 A 176 VAL ARG PRO GLY VAL THR TYR THR TYR THR ILE ARG ALA SEQRES 8 A 176 ARG ALA GLU GLN ASP GLY ALA VAL VAL SER PHE THR VAL SEQRES 9 A 176 GLY ASN GLN SER PHE ASP GLU TYR GLY ARG LEU HIS HIS SEQRES 10 A 176 GLN GLN ILE THR THR GLU TRP GLN PRO PHE THR PHE GLU SEQRES 11 A 176 PHE THR VAL SER ASP GLN GLU THR VAL ILE ARG ALA PRO SEQRES 12 A 176 ILE HIS PHE GLY TYR ALA ALA ASN VAL GLY ASN THR ILE SEQRES 13 A 176 TYR ILE ASP GLY LEU ALA ILE VAL ASP LEU ALA ALA LEU SEQRES 14 A 176 GLU HIS HIS HIS HIS HIS HIS HET CA A1167 1 HET GLC A1169 12 HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET XYS B 5 9 HET XYS B 6 9 HET XYS B 7 9 HETNAM CA CALCIUM ION HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 2 CA CA 2+ FORMUL 3 GLC C6 H12 O6 FORMUL 4 BGC 4(C6 H12 O6) FORMUL 8 XYS 3(C5 H10 O5) FORMUL 11 HOH *316(H2 O) HELIX 1 1 ASN A 67 ASN A 70 5 4 HELIX 2 2 TYR A 149 VAL A 153 5 5 SHEET 1 AA 6 GLY A 16 VAL A 17 0 SHEET 2 AA 6 VAL A 41 GLU A 46 -1 O VAL A 44 N GLY A 16 SHEET 3 AA 6 LYS A 55 THR A 60 -1 O VAL A 56 N LEU A 45 SHEET 4 AA 6 THR A 156 ASP A 166 -1 O ILE A 157 N VAL A 59 SHEET 5 AA 6 THR A 85 ALA A 94 -1 O THR A 87 N VAL A 165 SHEET 6 AA 6 GLN A 126 THR A 133 -1 O GLN A 126 N ALA A 92 SHEET 1 AB 5 TRP A 28 ASP A 29 0 SHEET 2 AB 5 GLN A 72 ASN A 79 -1 O THR A 74 N ASP A 29 SHEET 3 AB 5 VAL A 140 HIS A 146 -1 O ILE A 141 N VAL A 78 SHEET 4 AB 5 ALA A 99 GLY A 106 -1 O SER A 102 N HIS A 146 SHEET 5 AB 5 GLU A 112 ILE A 121 -1 N TYR A 113 O VAL A 105 LINK O4 BGLC A1169 C1 BGC B 2 1555 1555 1.39 LINK O4 ABGC B 1 C1 BGC B 2 1555 1555 1.39 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.41 LINK O6 BGC B 2 C1 XYS B 7 1555 1555 1.41 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.39 LINK O6 BGC B 3 C1 XYS B 6 1555 1555 1.48 LINK O6 BGC B 4 C1 XYS B 5 1555 1555 1.41 LINK O GLY A 9 CA CA A1167 1555 1555 2.42 LINK OE2 GLU A 11 CA CA A1167 1555 1555 2.36 LINK OE2 GLU A 52 CA CA A1167 1555 1555 2.33 LINK O GLU A 52 CA CA A1167 1555 1555 2.40 LINK O LYS A 55 CA CA A1167 1555 1555 2.32 LINK OD1 ASP A 160 CA CA A1167 1555 1555 2.40 LINK OD2 ASP A 160 CA CA A1167 1555 1555 2.62 CISPEP 1 LEU A 76 PRO A 77 0 -13.32 CRYST1 71.780 48.790 44.220 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013931 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022614 0.00000