HEADER LYASE 22-APR-13 4BK9 TITLE CRYSTAL STRUCTURE OF 2-KETO-3-DEOXY-6-PHOSPHO-GLUCONATE ALDOLASE FROM TITLE 2 ZYMOMONAS MOBILIS ATCC 29191 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE/4-HYDROXY-2-OXO COMPND 3 GLUTARATE ALDOLASE; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: 2-KETO-3-DEOXY-6-PHOSPHO-GLUCONATE ALDOLASE; COMPND 6 EC: 4.1.2.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS; SOURCE 3 ORGANISM_TAXID: 542; SOURCE 4 ATCC: 29191; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNHEDAZM KEYWDS LYASE, ENTNER-DOUDOROFF-PATHWAY, CHEMOSELECTIVITY, PYRUVATE KEYWDS 2 SPECIFICITY EXPDTA X-RAY DIFFRACTION AUTHOR T.CLASSEN,D.SCHLIEPER,G.GROTH,J.PIETRUSZKA REVDAT 3 20-DEC-23 4BK9 1 REMARK REVDAT 2 08-MAY-19 4BK9 1 REMARK REVDAT 1 30-APR-14 4BK9 0 JRNL AUTH T.CLASSEN,D.SCHLIEPER,G.GROTH,J.PIETRUSZKA JRNL TITL CRYSTAL STRUCTURE OF 2-KETO-3-DEOXY-6-PHOSPHO- GLUCONATE JRNL TITL 2 ALDOLASE FROM ZYMOMONAS MOBILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 15242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 816 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.499 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4590 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4645 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6245 ; 1.729 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10708 ; 1.033 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 617 ; 6.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;44.063 ;24.681 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 750 ;18.964 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.521 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 757 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5111 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 872 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2477 ; 1.339 ; 1.940 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2476 ; 1.337 ; 1.940 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3091 ; 2.247 ; 2.907 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2113 ; 2.402 ; 2.261 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0830 52.0310 18.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.2802 T22: 0.1955 REMARK 3 T33: 0.1733 T12: 0.0296 REMARK 3 T13: -0.1063 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 3.2461 L22: 2.5280 REMARK 3 L33: 7.6434 L12: 1.1140 REMARK 3 L13: 2.4924 L23: 0.6528 REMARK 3 S TENSOR REMARK 3 S11: -0.1580 S12: -0.7188 S13: 0.3899 REMARK 3 S21: 0.6115 S22: -0.1321 S23: -0.1116 REMARK 3 S31: -0.3848 S32: -0.3154 S33: 0.2901 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7760 41.1100 13.8350 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0927 REMARK 3 T33: 0.0494 T12: -0.0025 REMARK 3 T13: 0.0416 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.2315 L22: 4.4769 REMARK 3 L33: 5.4708 L12: 0.0124 REMARK 3 L13: 1.4315 L23: 1.6717 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: -0.4064 S13: 0.1584 REMARK 3 S21: 0.5519 S22: -0.1003 S23: 0.3266 REMARK 3 S31: 0.1330 S32: -0.5326 S33: 0.1299 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6140 49.6320 2.9610 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1203 REMARK 3 T33: 0.1266 T12: -0.0728 REMARK 3 T13: -0.0073 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 2.6258 L22: 5.2077 REMARK 3 L33: 4.2507 L12: -0.5837 REMARK 3 L13: 0.1705 L23: 1.4265 REMARK 3 S TENSOR REMARK 3 S11: -0.2490 S12: 0.1207 S13: 0.3098 REMARK 3 S21: 0.0035 S22: 0.1639 S23: -0.5383 REMARK 3 S31: -0.4546 S32: 0.6956 S33: 0.0851 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1490 9.7570 9.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.0546 REMARK 3 T33: 0.1539 T12: -0.0114 REMARK 3 T13: -0.0289 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 2.9185 L22: 5.8476 REMARK 3 L33: 1.9825 L12: -0.7206 REMARK 3 L13: -0.2354 L23: 0.0702 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: -0.2995 S13: -0.6348 REMARK 3 S21: 0.2166 S22: 0.1019 S23: -0.0545 REMARK 3 S31: 0.4815 S32: 0.0643 S33: -0.0537 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 133 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8340 20.9230 7.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.1705 REMARK 3 T33: 0.1529 T12: -0.0564 REMARK 3 T13: -0.0313 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 4.3003 L22: 6.2968 REMARK 3 L33: 4.1374 L12: 0.2061 REMARK 3 L13: -0.2627 L23: -0.7033 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.0012 S13: -0.2566 REMARK 3 S21: -0.1731 S22: 0.0042 S23: -0.6948 REMARK 3 S31: -0.0251 S32: 0.6549 S33: 0.0426 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 66 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1820 33.4550 -22.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.1745 REMARK 3 T33: 0.1101 T12: -0.0323 REMARK 3 T13: -0.0621 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.0489 L22: 1.9753 REMARK 3 L33: 4.6869 L12: -0.4942 REMARK 3 L13: -0.3953 L23: -1.3609 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: 0.0838 S13: -0.1112 REMARK 3 S21: -0.1936 S22: 0.0844 S23: 0.4433 REMARK 3 S31: -0.0822 S32: -0.5213 S33: -0.1268 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 67 C 173 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2470 25.6880 -9.7800 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0411 REMARK 3 T33: 0.0308 T12: -0.0380 REMARK 3 T13: 0.0036 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.6500 L22: 2.4610 REMARK 3 L33: 4.3932 L12: -0.2485 REMARK 3 L13: 1.6919 L23: -0.7475 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0205 S13: -0.1708 REMARK 3 S21: 0.0076 S22: 0.0127 S23: 0.0476 REMARK 3 S31: 0.2159 S32: -0.2247 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 174 C 215 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9200 30.3210 -25.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.2058 REMARK 3 T33: 0.1521 T12: -0.0241 REMARK 3 T13: 0.0501 T23: -0.0729 REMARK 3 L TENSOR REMARK 3 L11: 5.7267 L22: 6.8748 REMARK 3 L33: 10.0906 L12: -0.7947 REMARK 3 L13: 1.7571 L23: -6.2363 REMARK 3 S TENSOR REMARK 3 S11: -0.2496 S12: 0.2205 S13: 0.2637 REMARK 3 S21: -0.4031 S22: 0.0667 S23: -0.7156 REMARK 3 S31: 0.1645 S32: 0.1802 S33: 0.1829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER 1-MICROS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 59.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.240 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.49 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP USING MOLREP, CHAINSAW, PHASER, REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1FQ0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROBATCH, 1 UL 10 MG/ML PROTEIN PLUS REMARK 280 1 UL 100 MM NAOAC/ACOH PH 4.6, 200 MM (NH4)2SO4, 30% W/V PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.02500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 MET A 8 REMARK 465 ILE A 9 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 MET B 8 REMARK 465 ILE B 9 REMARK 465 MET C 1 REMARK 465 HIS C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 MET C 8 REMARK 465 ILE C 9 REMARK 465 ALA C 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 134 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 55.34 -90.04 REMARK 500 ALA A 192 -130.77 40.34 REMARK 500 ALA B 192 -131.09 40.67 REMARK 500 LEU C 52 54.39 -91.23 REMARK 500 ALA C 192 -129.62 41.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1220 DBREF 4BK9 A 10 216 UNP I6XVB3 I6XVB3_ZYMMB 2 208 DBREF 4BK9 B 10 216 UNP I6XVB3 I6XVB3_ZYMMB 2 208 DBREF 4BK9 C 10 216 UNP I6XVB3 I6XVB3_ZYMMB 2 208 SEQADV 4BK9 MET A 1 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS A 2 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS A 3 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS A 4 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS A 5 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS A 6 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS A 7 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 MET A 8 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 ILE A 9 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 MET B 1 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS B 2 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS B 3 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS B 4 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS B 5 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS B 6 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS B 7 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 MET B 8 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 ILE B 9 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 MET C 1 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS C 2 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS C 3 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS C 4 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS C 5 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS C 6 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 HIS C 7 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 MET C 8 UNP I6XVB3 EXPRESSION TAG SEQADV 4BK9 ILE C 9 UNP I6XVB3 EXPRESSION TAG SEQRES 1 A 216 MET HIS HIS HIS HIS HIS HIS MET ILE ARG ASP ILE ASP SEQRES 2 A 216 SER VAL MET ARG LEU ALA PRO VAL MET PRO VAL LEU VAL SEQRES 3 A 216 ILE GLU ASP ILE ALA ASP ALA LYS PRO ILE ALA GLU ALA SEQRES 4 A 216 LEU VAL ALA GLY GLY LEU ASN VAL LEU GLU VAL THR LEU SEQRES 5 A 216 ARG THR PRO CYS ALA LEU GLU ALA ILE LYS ILE MET LYS SEQRES 6 A 216 GLU VAL PRO GLY ALA VAL VAL GLY ALA GLY THR VAL LEU SEQRES 7 A 216 ASN ALA LYS MET LEU ASP GLN ALA GLN GLU ALA GLY CYS SEQRES 8 A 216 GLU PHE PHE VAL SER PRO GLY LEU THR ALA ASP LEU GLY SEQRES 9 A 216 LYS HIS ALA VAL ALA GLN LYS ALA ALA LEU LEU PRO GLY SEQRES 10 A 216 VAL ALA ASN ALA ALA ASP VAL MET LEU GLY LEU ASP LEU SEQRES 11 A 216 GLY LEU ASP ARG PHE LYS PHE PHE PRO ALA GLU ASN ILE SEQRES 12 A 216 GLY GLY LEU PRO ALA LEU LYS SER MET ALA SER VAL PHE SEQRES 13 A 216 ARG GLN VAL ARG PHE CYS PRO THR GLY GLY ILE THR PRO SEQRES 14 A 216 ALA SER ALA PRO LYS TYR LEU GLU ASN PRO SER ILE LEU SEQRES 15 A 216 CYS VAL GLY GLY SER TRP VAL VAL PRO ALA GLY LYS PRO SEQRES 16 A 216 ASP VAL ALA LYS ILE THR ALA LEU ALA LYS GLU ALA SER SEQRES 17 A 216 ALA PHE LYS ARG ALA ALA VAL ALA SEQRES 1 B 216 MET HIS HIS HIS HIS HIS HIS MET ILE ARG ASP ILE ASP SEQRES 2 B 216 SER VAL MET ARG LEU ALA PRO VAL MET PRO VAL LEU VAL SEQRES 3 B 216 ILE GLU ASP ILE ALA ASP ALA LYS PRO ILE ALA GLU ALA SEQRES 4 B 216 LEU VAL ALA GLY GLY LEU ASN VAL LEU GLU VAL THR LEU SEQRES 5 B 216 ARG THR PRO CYS ALA LEU GLU ALA ILE LYS ILE MET LYS SEQRES 6 B 216 GLU VAL PRO GLY ALA VAL VAL GLY ALA GLY THR VAL LEU SEQRES 7 B 216 ASN ALA LYS MET LEU ASP GLN ALA GLN GLU ALA GLY CYS SEQRES 8 B 216 GLU PHE PHE VAL SER PRO GLY LEU THR ALA ASP LEU GLY SEQRES 9 B 216 LYS HIS ALA VAL ALA GLN LYS ALA ALA LEU LEU PRO GLY SEQRES 10 B 216 VAL ALA ASN ALA ALA ASP VAL MET LEU GLY LEU ASP LEU SEQRES 11 B 216 GLY LEU ASP ARG PHE LYS PHE PHE PRO ALA GLU ASN ILE SEQRES 12 B 216 GLY GLY LEU PRO ALA LEU LYS SER MET ALA SER VAL PHE SEQRES 13 B 216 ARG GLN VAL ARG PHE CYS PRO THR GLY GLY ILE THR PRO SEQRES 14 B 216 ALA SER ALA PRO LYS TYR LEU GLU ASN PRO SER ILE LEU SEQRES 15 B 216 CYS VAL GLY GLY SER TRP VAL VAL PRO ALA GLY LYS PRO SEQRES 16 B 216 ASP VAL ALA LYS ILE THR ALA LEU ALA LYS GLU ALA SER SEQRES 17 B 216 ALA PHE LYS ARG ALA ALA VAL ALA SEQRES 1 C 216 MET HIS HIS HIS HIS HIS HIS MET ILE ARG ASP ILE ASP SEQRES 2 C 216 SER VAL MET ARG LEU ALA PRO VAL MET PRO VAL LEU VAL SEQRES 3 C 216 ILE GLU ASP ILE ALA ASP ALA LYS PRO ILE ALA GLU ALA SEQRES 4 C 216 LEU VAL ALA GLY GLY LEU ASN VAL LEU GLU VAL THR LEU SEQRES 5 C 216 ARG THR PRO CYS ALA LEU GLU ALA ILE LYS ILE MET LYS SEQRES 6 C 216 GLU VAL PRO GLY ALA VAL VAL GLY ALA GLY THR VAL LEU SEQRES 7 C 216 ASN ALA LYS MET LEU ASP GLN ALA GLN GLU ALA GLY CYS SEQRES 8 C 216 GLU PHE PHE VAL SER PRO GLY LEU THR ALA ASP LEU GLY SEQRES 9 C 216 LYS HIS ALA VAL ALA GLN LYS ALA ALA LEU LEU PRO GLY SEQRES 10 C 216 VAL ALA ASN ALA ALA ASP VAL MET LEU GLY LEU ASP LEU SEQRES 11 C 216 GLY LEU ASP ARG PHE LYS PHE PHE PRO ALA GLU ASN ILE SEQRES 12 C 216 GLY GLY LEU PRO ALA LEU LYS SER MET ALA SER VAL PHE SEQRES 13 C 216 ARG GLN VAL ARG PHE CYS PRO THR GLY GLY ILE THR PRO SEQRES 14 C 216 ALA SER ALA PRO LYS TYR LEU GLU ASN PRO SER ILE LEU SEQRES 15 C 216 CYS VAL GLY GLY SER TRP VAL VAL PRO ALA GLY LYS PRO SEQRES 16 C 216 ASP VAL ALA LYS ILE THR ALA LEU ALA LYS GLU ALA SER SEQRES 17 C 216 ALA PHE LYS ARG ALA ALA VAL ALA HET SO4 A1217 5 HET SO4 A1218 5 HET SO4 B1217 5 HET SO4 B1218 5 HET SO4 B1219 5 HET SO4 B1220 5 HET SO4 C1216 5 HET SO4 C1217 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 8(O4 S 2-) FORMUL 12 HOH *97(H2 O) HELIX 1 1 ASP A 11 ALA A 19 1 9 HELIX 2 2 ASP A 29 ALA A 31 5 3 HELIX 3 3 ASP A 32 GLY A 43 1 12 HELIX 4 4 CYS A 56 GLU A 66 1 11 HELIX 5 5 ASN A 79 ALA A 89 1 11 HELIX 6 6 THR A 100 GLN A 110 1 11 HELIX 7 7 ASN A 120 LEU A 130 1 11 HELIX 8 8 PRO A 139 ILE A 143 5 5 HELIX 9 9 GLY A 144 PHE A 156 1 13 HELIX 10 10 SER A 171 GLU A 177 1 7 HELIX 11 11 ASP A 196 ALA A 209 1 14 HELIX 12 12 ASP B 11 ALA B 19 1 9 HELIX 13 13 ASP B 29 ALA B 31 5 3 HELIX 14 14 ASP B 32 GLY B 43 1 12 HELIX 15 15 CYS B 56 GLU B 66 1 11 HELIX 16 16 ASN B 79 ALA B 89 1 11 HELIX 17 17 THR B 100 GLN B 110 1 11 HELIX 18 18 ASN B 120 LEU B 130 1 11 HELIX 19 19 PRO B 139 ILE B 143 5 5 HELIX 20 20 GLY B 144 PHE B 156 1 13 HELIX 21 21 SER B 171 GLU B 177 1 7 HELIX 22 22 ASP B 196 ALA B 209 1 14 HELIX 23 23 ASP C 11 ALA C 19 1 9 HELIX 24 24 ASP C 29 ALA C 31 5 3 HELIX 25 25 ASP C 32 GLY C 43 1 12 HELIX 26 26 CYS C 56 GLU C 66 1 11 HELIX 27 27 ASN C 79 ALA C 89 1 11 HELIX 28 28 THR C 100 GLN C 110 1 11 HELIX 29 29 ASN C 120 LEU C 130 1 11 HELIX 30 30 PRO C 139 ILE C 143 5 5 HELIX 31 31 GLY C 144 PHE C 156 1 13 HELIX 32 32 SER C 171 GLU C 177 1 7 HELIX 33 33 ASP C 196 ALA C 209 1 14 SHEET 1 AA 8 ARG A 160 PRO A 163 0 SHEET 2 AA 8 ARG A 134 PHE A 137 1 O PHE A 135 N CYS A 162 SHEET 3 AA 8 LEU A 114 VAL A 118 1 O PRO A 116 N LYS A 136 SHEET 4 AA 8 PHE A 93 SER A 96 1 O PHE A 94 N LEU A 115 SHEET 5 AA 8 VAL A 71 GLY A 75 1 O ALA A 74 N VAL A 95 SHEET 6 AA 8 VAL A 47 THR A 51 1 O LEU A 48 N GLY A 73 SHEET 7 AA 8 VAL A 21 LEU A 25 1 O PRO A 23 N GLU A 49 SHEET 8 AA 8 VAL A 184 GLY A 186 1 O VAL A 184 N MET A 22 SHEET 1 BA 4 VAL B 71 GLY B 75 0 SHEET 2 BA 4 VAL B 47 THR B 51 1 O LEU B 48 N GLY B 73 SHEET 3 BA 4 VAL B 21 LEU B 25 1 O PRO B 23 N GLU B 49 SHEET 4 BA 4 VAL B 184 GLY B 186 1 O VAL B 184 N MET B 22 SHEET 1 BB 4 PHE B 94 SER B 96 0 SHEET 2 BB 4 LEU B 114 VAL B 118 1 O LEU B 115 N SER B 96 SHEET 3 BB 4 ARG B 134 PHE B 137 1 O LYS B 136 N VAL B 118 SHEET 4 BB 4 ARG B 160 PRO B 163 1 O ARG B 160 N PHE B 135 SHEET 1 CA 8 ARG C 160 PRO C 163 0 SHEET 2 CA 8 ARG C 134 PHE C 137 1 O PHE C 135 N CYS C 162 SHEET 3 CA 8 LEU C 114 VAL C 118 1 O PRO C 116 N LYS C 136 SHEET 4 CA 8 PHE C 93 SER C 96 1 O PHE C 94 N LEU C 115 SHEET 5 CA 8 VAL C 71 GLY C 75 1 O ALA C 74 N VAL C 95 SHEET 6 CA 8 VAL C 47 THR C 51 1 O LEU C 48 N GLY C 73 SHEET 7 CA 8 VAL C 21 LEU C 25 1 O PRO C 23 N GLU C 49 SHEET 8 CA 8 VAL C 184 GLY C 186 1 O VAL C 184 N MET C 22 CISPEP 1 PHE A 138 PRO A 139 0 -12.88 CISPEP 2 PHE B 138 PRO B 139 0 -6.93 CISPEP 3 PHE C 138 PRO C 139 0 -14.75 SITE 1 AC1 6 GLU A 49 ARG A 53 THR A 76 VAL A 95 SITE 2 AC1 6 SER A 96 PRO A 97 SITE 1 AC2 3 GLY A 165 GLY A 166 SER A 187 SITE 1 AC3 6 GLU B 49 ARG B 53 GLY B 75 THR B 76 SITE 2 AC3 6 SER B 96 PRO B 97 SITE 1 AC4 3 GLY B 165 GLY B 166 SER B 187 SITE 1 AC5 3 ARG B 17 ARG B 160 GLY C 69 SITE 1 AC6 7 GLU C 49 ARG C 53 GLY C 75 THR C 76 SITE 2 AC6 7 VAL C 95 SER C 96 PRO C 97 SITE 1 AC7 3 GLY C 165 GLY C 166 SER C 187 SITE 1 AC8 9 ASN A 120 ALA A 122 ASP A 123 HOH A2022 SITE 2 AC8 9 ASN B 120 ASP B 123 ASN C 120 ALA C 122 SITE 3 AC8 9 ASP C 123 CRYST1 54.380 118.050 55.910 90.00 109.51 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018389 0.000000 0.006516 0.00000 SCALE2 0.000000 0.008471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018975 0.00000