HEADER OXIDOREDUCTASE 29-APR-13 4BKQ TITLE ENOYL-ACP REDUCTASE FROM YERSINIA PESTIS (WILDTYPE)WITH COFACTOR NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REDUCTASE YPZ3_3519; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENOYL-ACP REDUCATSE, TRANS-2-ENOYL-COA REDUCTASE; COMPND 5 EC: 1.3.1.-, 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 1035377; SOURCE 4 STRAIN: A1122; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS OXIDOREDUCTASE, FATTY ACID BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.W.HIRSCHBECK,C.NECKLES,P.J.TONGE,C.KISKER REVDAT 4 20-DEC-23 4BKQ 1 REMARK REVDAT 3 15-JUN-16 4BKQ 1 JRNL REVDAT 2 25-MAY-16 4BKQ 1 JRNL REVDAT 1 14-MAY-14 4BKQ 0 JRNL AUTH C.NECKLES,A.PSCHIBUL,C.LAI,M.HIRSCHBECK,J.KUPER,S.DAVOODI, JRNL AUTH 2 J.ZOU,N.LIU,P.PAN,S.SHAH,F.DARYAEE,G.R.BOMMINENI,C.LAI, JRNL AUTH 3 C.SIMMERLING,C.KISKER,P.J.TONGE JRNL TITL SELECTIVITY OF PYRIDONE- AND DIPHENYL ETHER-BASED INHIBITORS JRNL TITL 2 FOR THE YERSINIA PESTIS FABV ENOYL-ACP REDUCTASE. JRNL REF BIOCHEMISTRY V. 55 2992 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27136302 JRNL DOI 10.1021/ACS.BIOCHEM.5B01301 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 28758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9889 - 4.9533 1.00 3172 148 0.1608 0.1849 REMARK 3 2 4.9533 - 3.9323 1.00 2931 187 0.1493 0.1808 REMARK 3 3 3.9323 - 3.4354 1.00 2907 158 0.1867 0.2233 REMARK 3 4 3.4354 - 3.1214 0.99 2884 139 0.2224 0.2369 REMARK 3 5 3.1214 - 2.8977 0.98 2843 140 0.2516 0.3227 REMARK 3 6 2.8977 - 2.7269 0.96 2731 135 0.2495 0.3324 REMARK 3 7 2.7269 - 2.5903 0.92 2629 127 0.2908 0.3410 REMARK 3 8 2.5903 - 2.4776 0.89 2518 144 0.3025 0.3985 REMARK 3 9 2.4776 - 2.3822 0.86 2412 146 0.2965 0.3497 REMARK 3 10 2.3822 - 2.3000 0.81 2291 116 0.2972 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 46.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.93670 REMARK 3 B22 (A**2) : 9.93670 REMARK 3 B33 (A**2) : -19.87350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3293 REMARK 3 ANGLE : 1.080 4473 REMARK 3 CHIRALITY : 0.072 496 REMARK 3 PLANARITY : 0.004 580 REMARK 3 DIHEDRAL : 16.240 1210 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:50) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4727 -10.8673 13.4186 REMARK 3 T TENSOR REMARK 3 T11: 0.5857 T22: 0.4012 REMARK 3 T33: 0.3337 T12: 0.0723 REMARK 3 T13: 0.0519 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.6555 L22: 0.4109 REMARK 3 L33: 0.5294 L12: 0.1679 REMARK 3 L13: -0.0020 L23: -0.2656 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: -0.2680 S13: -0.2657 REMARK 3 S21: 0.5005 S22: -0.1613 S23: -0.0656 REMARK 3 S31: -0.0915 S32: 0.0055 S33: 0.0827 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 51:123) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3650 -12.9213 -9.7281 REMARK 3 T TENSOR REMARK 3 T11: 0.4653 T22: 0.3677 REMARK 3 T33: 0.4033 T12: 0.0687 REMARK 3 T13: 0.0524 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.0682 L22: 0.3077 REMARK 3 L33: 0.4738 L12: -0.0940 REMARK 3 L13: -0.0598 L23: 0.2950 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0134 S13: -0.0963 REMARK 3 S21: -0.2007 S22: -0.0724 S23: 0.1761 REMARK 3 S31: 0.0295 S32: 0.1867 S33: 0.0575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 124:150) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9961 -8.3930 -14.5626 REMARK 3 T TENSOR REMARK 3 T11: 0.5035 T22: 0.3266 REMARK 3 T33: 0.4780 T12: 0.0867 REMARK 3 T13: -0.0566 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.0283 L22: 0.0098 REMARK 3 L33: 0.1121 L12: -0.0000 REMARK 3 L13: 0.0469 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.0441 S13: 0.0549 REMARK 3 S21: -0.2518 S22: -0.1104 S23: 0.1154 REMARK 3 S31: -0.1574 S32: -0.0043 S33: 0.0636 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 151:190) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6558 -26.4223 -9.9617 REMARK 3 T TENSOR REMARK 3 T11: 0.8305 T22: 0.3370 REMARK 3 T33: 0.5870 T12: 0.0203 REMARK 3 T13: 0.0026 T23: -0.0963 REMARK 3 L TENSOR REMARK 3 L11: 0.0384 L22: 0.0438 REMARK 3 L33: 0.0718 L12: -0.0213 REMARK 3 L13: 0.0201 L23: 0.0514 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.1283 S13: -0.0872 REMARK 3 S21: -0.0139 S22: -0.1648 S23: 0.1537 REMARK 3 S31: 0.2141 S32: -0.0429 S33: 0.0569 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 191:243) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3831 -28.6490 -10.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.9472 T22: 0.3352 REMARK 3 T33: 0.5971 T12: 0.0598 REMARK 3 T13: -0.0418 T23: -0.0986 REMARK 3 L TENSOR REMARK 3 L11: 0.2711 L22: 0.1296 REMARK 3 L33: 0.2007 L12: -0.1178 REMARK 3 L13: -0.1898 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.2469 S12: 0.0979 S13: -0.2095 REMARK 3 S21: -0.1622 S22: -0.2136 S23: 0.3000 REMARK 3 S31: 0.3070 S32: -0.1143 S33: 0.1558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 244:340) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1022 -31.8951 -13.9877 REMARK 3 T TENSOR REMARK 3 T11: 1.0491 T22: 0.2165 REMARK 3 T33: 0.4864 T12: 0.3064 REMARK 3 T13: 0.0597 T23: -0.1620 REMARK 3 L TENSOR REMARK 3 L11: 0.0725 L22: 0.0338 REMARK 3 L33: 0.2014 L12: 0.0245 REMARK 3 L13: -0.0400 L23: 0.0482 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.1095 S13: -0.2210 REMARK 3 S21: -0.2535 S22: -0.0898 S23: 0.2202 REMARK 3 S31: 0.3156 S32: 0.1201 S33: -0.0581 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 341:347) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4574 -28.1806 -28.2543 REMARK 3 T TENSOR REMARK 3 T11: 1.1378 T22: 0.8960 REMARK 3 T33: 0.6496 T12: 0.1558 REMARK 3 T13: 0.2684 T23: -0.0804 REMARK 3 L TENSOR REMARK 3 L11: 0.0174 L22: 0.0587 REMARK 3 L33: 0.2047 L12: -0.0211 REMARK 3 L13: 0.0013 L23: -0.0791 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: 0.0482 S13: -0.0084 REMARK 3 S21: -0.0002 S22: -0.0528 S23: -0.0210 REMARK 3 S31: -0.0223 S32: -0.0455 S33: 0.0348 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 348:382) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0243 -42.1047 -7.8742 REMARK 3 T TENSOR REMARK 3 T11: 1.1400 T22: 0.4081 REMARK 3 T33: 0.4627 T12: 0.5141 REMARK 3 T13: 0.0747 T23: -0.0877 REMARK 3 L TENSOR REMARK 3 L11: 0.2168 L22: 0.4099 REMARK 3 L33: 0.0017 L12: -0.1170 REMARK 3 L13: -0.0030 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: 0.0019 S13: -0.1458 REMARK 3 S21: 0.1534 S22: 0.0521 S23: -0.0761 REMARK 3 S31: 0.0685 S32: 0.0139 S33: -0.0167 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 383:414) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4074 -21.0883 6.1394 REMARK 3 T TENSOR REMARK 3 T11: 0.6610 T22: 0.4243 REMARK 3 T33: 0.4518 T12: 0.1442 REMARK 3 T13: 0.0401 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.1766 L22: 0.0078 REMARK 3 L33: 0.0459 L12: 0.0014 REMARK 3 L13: 0.0707 L23: 0.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.0120 S13: 0.0554 REMARK 3 S21: -0.0463 S22: -0.0184 S23: -0.1564 REMARK 3 S31: 0.2365 S32: 0.2161 S33: 0.0457 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 415:422) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6760 -3.7362 -5.5026 REMARK 3 T TENSOR REMARK 3 T11: 0.4647 T22: 0.4083 REMARK 3 T33: 0.4170 T12: 0.0828 REMARK 3 T13: 0.0140 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.0218 L22: 0.1790 REMARK 3 L33: 0.2351 L12: -0.0334 REMARK 3 L13: 0.0462 L23: -0.2036 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.0211 S13: 0.0103 REMARK 3 S21: 0.0053 S22: -0.0538 S23: -0.0163 REMARK 3 S31: -0.0670 S32: 0.0526 S33: 0.0115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30614 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZU2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2-1.5 M SODIUM MALONATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.27533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.63767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.45650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.81883 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 179.09417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 143.27533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.63767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.81883 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.45650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 179.09417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.81883 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 200 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 92 O HOH A 2013 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2004 O HOH A 2004 10555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 9 -159.66 -134.50 REMARK 500 LYS A 171 -63.86 -103.80 REMARK 500 LEU A 180 65.81 -106.25 REMARK 500 TYR A 258 -85.20 -96.26 REMARK 500 MET A 307 -21.88 79.07 REMARK 500 ASP A 361 118.50 -39.80 REMARK 500 ASP A 385 49.06 -102.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 1423 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BKO RELATED DB: PDB REMARK 900 ENOYL-ACP REDUCATASE FABV FROM BURKHOLDERIA PSEUDOMALLEI (APO) REMARK 900 RELATED ID: 4BKR RELATED DB: PDB REMARK 900 ENOYL-ACP REDUCTASE FROM YERSINIA PESTIS (WILDTYPE, REMOVED HISTAG) REMARK 900 WITH COFACTOR NADH REMARK 900 RELATED ID: 4BKU RELATED DB: PDB REMARK 900 ENOYL-ACP REDUCTASE FABI FROM BURKHOLDERIA PSEUDOMALLEI WITH REMARK 900 COFACTOR NADH AND INHIBITOR PT155 DBREF 4BKQ A 24 422 UNP Q8Z9U1 Y4104_YERPE 1 399 SEQADV 4BKQ MET A 1 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ GLY A 2 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ SER A 3 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ SER A 4 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ HIS A 5 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ HIS A 6 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ HIS A 7 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ HIS A 8 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ HIS A 9 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ HIS A 10 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ SER A 11 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ SER A 12 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ GLY A 13 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ LEU A 14 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ VAL A 15 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ PRO A 16 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ ARG A 17 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ GLY A 18 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ SER A 19 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ HIS A 20 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ MET A 21 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ LEU A 22 UNP Q8Z9U1 EXPRESSION TAG SEQADV 4BKQ GLU A 23 UNP Q8Z9U1 EXPRESSION TAG SEQRES 1 A 422 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 422 LEU VAL PRO ARG GLY SER HIS MET LEU GLU MET ILE ILE SEQRES 3 A 422 LYS PRO ARG VAL ARG GLY PHE ILE CYS VAL THR ALA HIS SEQRES 4 A 422 PRO THR GLY CYS GLU ALA ASN VAL LYS LYS GLN ILE ASP SEQRES 5 A 422 TYR VAL THR THR GLU GLY PRO ILE ALA ASN GLY PRO LYS SEQRES 6 A 422 ARG VAL LEU VAL ILE GLY ALA SER THR GLY TYR GLY LEU SEQRES 7 A 422 ALA ALA ARG ILE THR ALA ALA PHE GLY CYS GLY ALA ASP SEQRES 8 A 422 THR LEU GLY VAL PHE PHE GLU ARG PRO GLY GLU GLU GLY SEQRES 9 A 422 LYS PRO GLY THR SER GLY TRP TYR ASN SER ALA ALA PHE SEQRES 10 A 422 HIS LYS PHE ALA ALA GLN LYS GLY LEU TYR ALA LYS SER SEQRES 11 A 422 ILE ASN GLY ASP ALA PHE SER ASP GLU ILE LYS GLN LEU SEQRES 12 A 422 THR ILE ASP ALA ILE LYS GLN ASP LEU GLY GLN VAL ASP SEQRES 13 A 422 GLN VAL ILE TYR SER LEU ALA SER PRO ARG ARG THR HIS SEQRES 14 A 422 PRO LYS THR GLY GLU VAL PHE ASN SER ALA LEU LYS PRO SEQRES 15 A 422 ILE GLY ASN ALA VAL ASN LEU ARG GLY LEU ASP THR ASP SEQRES 16 A 422 LYS GLU VAL ILE LYS GLU SER VAL LEU GLN PRO ALA THR SEQRES 17 A 422 GLN SER GLU ILE ASP SER THR VAL ALA VAL MET GLY GLY SEQRES 18 A 422 GLU ASP TRP GLN MET TRP ILE ASP ALA LEU LEU ASP ALA SEQRES 19 A 422 GLY VAL LEU ALA GLU GLY ALA GLN THR THR ALA PHE THR SEQRES 20 A 422 TYR LEU GLY GLU LYS ILE THR HIS ASP ILE TYR TRP ASN SEQRES 21 A 422 GLY SER ILE GLY ALA ALA LYS LYS ASP LEU ASP GLN LYS SEQRES 22 A 422 VAL LEU ALA ILE ARG GLU SER LEU ALA ALA HIS GLY GLY SEQRES 23 A 422 GLY ASP ALA ARG VAL SER VAL LEU LYS ALA VAL VAL THR SEQRES 24 A 422 GLN ALA SER SER ALA ILE PRO MET MET PRO LEU TYR LEU SEQRES 25 A 422 SER LEU LEU PHE LYS VAL MET LYS GLU LYS GLY THR HIS SEQRES 26 A 422 GLU GLY CYS ILE GLU GLN VAL TYR SER LEU TYR LYS ASP SEQRES 27 A 422 SER LEU CYS GLY ASP SER PRO HIS MET ASP GLN GLU GLY SEQRES 28 A 422 ARG LEU ARG ALA ASP TYR LYS GLU LEU ASP PRO GLU VAL SEQRES 29 A 422 GLN ASN GLN VAL GLN GLN LEU TRP ASP GLN VAL THR ASN SEQRES 30 A 422 ASP ASN ILE TYR GLN LEU THR ASP PHE VAL GLY TYR LYS SEQRES 31 A 422 SER GLU PHE LEU ASN LEU PHE GLY PHE GLY ILE ASP GLY SEQRES 32 A 422 VAL ASP TYR ASP ALA ASP VAL ASN PRO ASP VAL LYS ILE SEQRES 33 A 422 PRO ASN LEU ILE GLN GLY HET NAI A1423 44 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 HOH *33(H2 O) HELIX 1 1 GLY A 18 LEU A 22 5 5 HELIX 2 2 HIS A 39 GLY A 58 1 20 HELIX 3 3 THR A 74 GLY A 89 1 16 HELIX 4 4 THR A 108 LYS A 124 1 17 HELIX 5 5 SER A 137 LEU A 152 1 16 HELIX 6 6 THR A 208 GLY A 220 1 13 HELIX 7 7 GLY A 221 ASP A 233 1 13 HELIX 8 8 GLU A 251 ASP A 256 1 6 HELIX 9 9 GLY A 261 HIS A 284 1 24 HELIX 10 10 THR A 299 ALA A 304 1 6 HELIX 11 11 MET A 307 GLY A 323 1 17 HELIX 12 12 GLY A 327 SER A 339 1 13 HELIX 13 13 ASP A 356 ASP A 361 1 6 HELIX 14 14 ASP A 361 ASP A 373 1 13 HELIX 15 15 ASN A 379 THR A 384 1 6 HELIX 16 16 ASP A 385 PHE A 397 1 13 SHEET 1 AA 2 VAL A 30 ARG A 31 0 SHEET 2 AA 2 ILE A 34 CYS A 35 -1 O ILE A 34 N ARG A 31 SHEET 1 AB 8 LEU A 353 ARG A 354 0 SHEET 2 AB 8 ASP A 288 VAL A 293 1 O VAL A 291 N LEU A 353 SHEET 3 AB 8 LEU A 237 THR A 247 1 O ALA A 241 N ASP A 288 SHEET 4 AB 8 VAL A 155 TYR A 160 1 O VAL A 155 N ALA A 238 SHEET 5 AB 8 ARG A 66 ILE A 70 1 O ARG A 66 N ASP A 156 SHEET 6 AB 8 ASP A 91 PHE A 96 1 O ASP A 91 N VAL A 67 SHEET 7 AB 8 ALA A 128 ASN A 132 1 O LYS A 129 N GLY A 94 SHEET 8 AB 8 LEU A 419 GLN A 421 1 O ILE A 420 N ASN A 132 SHEET 1 AC 2 ARG A 166 THR A 168 0 SHEET 2 AC 2 VAL A 175 ASN A 177 -1 O PHE A 176 N ARG A 167 SHEET 1 AD 2 VAL A 187 ASP A 193 0 SHEET 2 AD 2 VAL A 198 LEU A 204 -1 O VAL A 198 N ASP A 193 SITE 1 AC1 30 HIS A 10 GLY A 71 ALA A 72 SER A 73 SITE 2 AC1 30 THR A 74 GLY A 75 TYR A 76 PHE A 96 SITE 3 AC1 30 PHE A 97 GLU A 98 GLY A 133 ASP A 134 SITE 4 AC1 30 ALA A 135 PHE A 136 SER A 161 LEU A 162 SITE 5 AC1 30 ALA A 163 SER A 164 PHE A 246 THR A 247 SITE 6 AC1 30 TYR A 248 LYS A 267 LEU A 294 LYS A 295 SITE 7 AC1 30 ALA A 296 VAL A 297 THR A 299 ALA A 301 SITE 8 AC1 30 SER A 302 HOH A2011 CRYST1 102.628 102.628 214.913 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009744 0.005626 0.000000 0.00000 SCALE2 0.000000 0.011251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004653 0.00000