HEADER PROTEIN TRANSPORT 02-MAY-13 4BL6 TITLE BICAUDAL-D USES A PARALLEL, HOMODIMERIC COILED COIL WITH HETEROTYPIC TITLE 2 REGISTRY TO CO-ORDINATE RECRUITMENT OF CARGOS TO DYNEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN BICAUDAL D; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CARGO BINDING DOMAIN, RESIDUES 656-745; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: FLY CDNA KEYWDS PROTEIN TRANSPORT, CARGO BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,H.K.SALTER,A.N.HOLDING,C.M.JOHNSON,E.STEPHENS,P.J.LUKAVSKY, AUTHOR 2 J.WALSHAW,S.L.BULLOCK REVDAT 3 12-JUL-17 4BL6 1 REVDAT 2 26-JUN-13 4BL6 1 JRNL REVDAT 1 12-JUN-13 4BL6 0 JRNL AUTH Y.LIU,H.K.SALTER,A.N.HOLDING,C.M.JOHNSON,E.STEPHENS, JRNL AUTH 2 P.J.LUKAVSKY,J.WALSHAW,S.L.BULLOCK JRNL TITL BICAUDAL-D USES A PARALLEL, HOMODIMERIC COILED COIL WITH JRNL TITL 2 HETEROTYPIC REGISTRY TO COORDINATE RECRUITMENT OF CARGOS TO JRNL TITL 3 DYNEIN JRNL REF GENES DEV. V. 27 1233 2013 JRNL REFN ISSN 0890-9369 JRNL PMID 23723415 JRNL DOI 10.1101/GAD.212381.112 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.37000 REMARK 3 B22 (A**2) : 19.37000 REMARK 3 B33 (A**2) : -38.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.598 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2580 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3464 ; 2.426 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 6.794 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;40.212 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;22.403 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.169 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1857 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 1.366 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2596 ; 2.210 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 946 ; 4.560 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 868 ; 6.790 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.523 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K, K, -L REMARK 3 TWIN FRACTION : 0.477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290052870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98055 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 34.00 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 34.70 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 18.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 5 % PEG4000, 10 % REMARK 280 GLYCEROL, 30 MM MAGNESIUM CHLORIDE, 30 MM CALCIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.50367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.00733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.25550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 158.75917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.75183 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 652 REMARK 465 SER A 653 REMARK 465 HIS A 654 REMARK 465 MSE A 655 REMARK 465 TYR A 656 REMARK 465 GLU A 657 REMARK 465 ASN A 658 REMARK 465 GLU A 659 REMARK 465 LYS A 660 REMARK 465 ASP A 743 REMARK 465 ARG A 744 REMARK 465 GLU A 745 REMARK 465 GLY B 652 REMARK 465 SER B 653 REMARK 465 HIS B 654 REMARK 465 MSE B 655 REMARK 465 TYR B 656 REMARK 465 GLU B 657 REMARK 465 ASN B 658 REMARK 465 GLU B 659 REMARK 465 LYS B 660 REMARK 465 ILE B 661 REMARK 465 ILE B 662 REMARK 465 GLU B 738 REMARK 465 GLU B 739 REMARK 465 MSE B 740 REMARK 465 GLU B 741 REMARK 465 MSE B 742 REMARK 465 ASP B 743 REMARK 465 ARG B 744 REMARK 465 GLU B 745 REMARK 465 GLY C 652 REMARK 465 SER C 653 REMARK 465 HIS C 654 REMARK 465 MSE C 655 REMARK 465 TYR C 656 REMARK 465 GLU C 657 REMARK 465 ARG C 744 REMARK 465 GLU C 745 REMARK 465 GLY D 652 REMARK 465 SER D 653 REMARK 465 HIS D 654 REMARK 465 MSE D 655 REMARK 465 TYR D 656 REMARK 465 GLU D 741 REMARK 465 MSE D 742 REMARK 465 ASP D 743 REMARK 465 ARG D 744 REMARK 465 GLU D 745 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 724 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 735 CG CD OE1 NE2 REMARK 470 ARG A 736 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 738 CG CD OE1 OE2 REMARK 470 LYS B 669 CG CD CE NZ REMARK 470 LEU B 737 O REMARK 470 ASN C 658 CG OD1 ND2 REMARK 470 GLU C 710 CG CD OE1 OE2 REMARK 470 GLN C 735 CG CD OE1 NE2 REMARK 470 ARG C 736 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 737 CG CD1 CD2 REMARK 470 GLU C 738 CG CD OE1 OE2 REMARK 470 GLU C 739 CG CD OE1 OE2 REMARK 470 MSE C 740 CG SE CE REMARK 470 GLU C 741 CG CD OE1 OE2 REMARK 470 MSE C 742 CG SE CE REMARK 470 ASP C 743 CG OD1 OD2 REMARK 470 GLU D 657 CG CD OE1 OE2 REMARK 470 GLU D 659 CG CD OE1 OE2 REMARK 470 LEU D 737 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ASP C 743 N ARG C 801 1.35 REMARK 500 OE2 GLU D 673 O HOH D 801 1.97 REMARK 500 OE1 GLU D 679 O HOH D 802 2.15 REMARK 500 O LEU A 737 CB GLU A 741 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 698 CE2 TYR A 698 CD2 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 723 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU C 674 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG C 707 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP D 665 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 LEU D 670 CB - CG - CD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 664 170.74 95.17 REMARK 500 GLU A 741 -36.73 -154.57 REMARK 500 SER B 664 170.70 24.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 822 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH B 827 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH C 922 DISTANCE = 8.37 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ARG C 801 DBREF 4BL6 A 656 745 UNP P16568 BICD_DROME 656 745 DBREF 4BL6 B 656 745 UNP P16568 BICD_DROME 656 745 DBREF 4BL6 C 656 745 UNP P16568 BICD_DROME 656 745 DBREF 4BL6 D 656 745 UNP P16568 BICD_DROME 656 745 SEQADV 4BL6 GLY A 652 UNP P16568 EXPRESSION TAG SEQADV 4BL6 SER A 653 UNP P16568 EXPRESSION TAG SEQADV 4BL6 HIS A 654 UNP P16568 EXPRESSION TAG SEQADV 4BL6 MSE A 655 UNP P16568 EXPRESSION TAG SEQADV 4BL6 GLY B 652 UNP P16568 EXPRESSION TAG SEQADV 4BL6 SER B 653 UNP P16568 EXPRESSION TAG SEQADV 4BL6 HIS B 654 UNP P16568 EXPRESSION TAG SEQADV 4BL6 MSE B 655 UNP P16568 EXPRESSION TAG SEQADV 4BL6 GLY C 652 UNP P16568 EXPRESSION TAG SEQADV 4BL6 SER C 653 UNP P16568 EXPRESSION TAG SEQADV 4BL6 HIS C 654 UNP P16568 EXPRESSION TAG SEQADV 4BL6 MSE C 655 UNP P16568 EXPRESSION TAG SEQADV 4BL6 GLY D 652 UNP P16568 EXPRESSION TAG SEQADV 4BL6 SER D 653 UNP P16568 EXPRESSION TAG SEQADV 4BL6 HIS D 654 UNP P16568 EXPRESSION TAG SEQADV 4BL6 MSE D 655 UNP P16568 EXPRESSION TAG SEQRES 1 A 94 GLY SER HIS MSE TYR GLU ASN GLU LYS ILE ILE VAL SER SEQRES 2 A 94 ASP THR MSE SER LYS LEU ARG ASN GLU LEU ARG LEU LEU SEQRES 3 A 94 LYS GLU ASP ALA ALA THR PHE SER SER LEU ARG ALA MSE SEQRES 4 A 94 PHE ALA ALA ARG CYS GLU GLU TYR VAL THR GLN VAL ASP SEQRES 5 A 94 ASP LEU ASN ARG GLN LEU GLU ALA ALA GLU GLU GLU LYS SEQRES 6 A 94 LYS THR LEU ASN GLN LEU LEU ARG LEU ALA VAL GLN GLN SEQRES 7 A 94 LYS LEU ALA LEU THR GLN ARG LEU GLU GLU MSE GLU MSE SEQRES 8 A 94 ASP ARG GLU SEQRES 1 B 94 GLY SER HIS MSE TYR GLU ASN GLU LYS ILE ILE VAL SER SEQRES 2 B 94 ASP THR MSE SER LYS LEU ARG ASN GLU LEU ARG LEU LEU SEQRES 3 B 94 LYS GLU ASP ALA ALA THR PHE SER SER LEU ARG ALA MSE SEQRES 4 B 94 PHE ALA ALA ARG CYS GLU GLU TYR VAL THR GLN VAL ASP SEQRES 5 B 94 ASP LEU ASN ARG GLN LEU GLU ALA ALA GLU GLU GLU LYS SEQRES 6 B 94 LYS THR LEU ASN GLN LEU LEU ARG LEU ALA VAL GLN GLN SEQRES 7 B 94 LYS LEU ALA LEU THR GLN ARG LEU GLU GLU MSE GLU MSE SEQRES 8 B 94 ASP ARG GLU SEQRES 1 C 94 GLY SER HIS MSE TYR GLU ASN GLU LYS ILE ILE VAL SER SEQRES 2 C 94 ASP THR MSE SER LYS LEU ARG ASN GLU LEU ARG LEU LEU SEQRES 3 C 94 LYS GLU ASP ALA ALA THR PHE SER SER LEU ARG ALA MSE SEQRES 4 C 94 PHE ALA ALA ARG CYS GLU GLU TYR VAL THR GLN VAL ASP SEQRES 5 C 94 ASP LEU ASN ARG GLN LEU GLU ALA ALA GLU GLU GLU LYS SEQRES 6 C 94 LYS THR LEU ASN GLN LEU LEU ARG LEU ALA VAL GLN GLN SEQRES 7 C 94 LYS LEU ALA LEU THR GLN ARG LEU GLU GLU MSE GLU MSE SEQRES 8 C 94 ASP ARG GLU SEQRES 1 D 94 GLY SER HIS MSE TYR GLU ASN GLU LYS ILE ILE VAL SER SEQRES 2 D 94 ASP THR MSE SER LYS LEU ARG ASN GLU LEU ARG LEU LEU SEQRES 3 D 94 LYS GLU ASP ALA ALA THR PHE SER SER LEU ARG ALA MSE SEQRES 4 D 94 PHE ALA ALA ARG CYS GLU GLU TYR VAL THR GLN VAL ASP SEQRES 5 D 94 ASP LEU ASN ARG GLN LEU GLU ALA ALA GLU GLU GLU LYS SEQRES 6 D 94 LYS THR LEU ASN GLN LEU LEU ARG LEU ALA VAL GLN GLN SEQRES 7 D 94 LYS LEU ALA LEU THR GLN ARG LEU GLU GLU MSE GLU MSE SEQRES 8 D 94 ASP ARG GLU MODRES 4BL6 MSE A 667 MET SELENOMETHIONINE MODRES 4BL6 MSE A 690 MET SELENOMETHIONINE MODRES 4BL6 MSE A 740 MET SELENOMETHIONINE MODRES 4BL6 MSE A 742 MET SELENOMETHIONINE MODRES 4BL6 MSE B 667 MET SELENOMETHIONINE MODRES 4BL6 MSE B 690 MET SELENOMETHIONINE MODRES 4BL6 MSE C 667 MET SELENOMETHIONINE MODRES 4BL6 MSE C 690 MET SELENOMETHIONINE MODRES 4BL6 MSE C 740 MET SELENOMETHIONINE MODRES 4BL6 MSE C 742 MET SELENOMETHIONINE MODRES 4BL6 MSE D 667 MET SELENOMETHIONINE MODRES 4BL6 MSE D 690 MET SELENOMETHIONINE MODRES 4BL6 MSE D 740 MET SELENOMETHIONINE HET MSE A 667 8 HET MSE A 690 8 HET MSE A 740 8 HET MSE A 742 8 HET MSE B 667 8 HET MSE B 690 8 HET MSE C 667 8 HET MSE C 690 8 HET MSE C 740 5 HET MSE C 742 5 HET MSE D 667 8 HET MSE D 690 8 HET MSE D 740 8 HET ARG C 801 4 HETNAM MSE SELENOMETHIONINE HETNAM ARG ARGININE FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 5 ARG C6 H15 N4 O2 1+ FORMUL 6 HOH *106(H2 O) HELIX 1 1 VAL A 663 MSE A 740 1 78 HELIX 2 2 SER B 664 ARG B 736 1 73 HELIX 3 3 ASN C 658 ASP C 743 1 86 HELIX 4 4 ASN D 658 MSE D 740 1 83 LINK C THR A 666 N MSE A 667 1555 1555 1.33 LINK C MSE A 667 N SER A 668 1555 1555 1.32 LINK C ALA A 689 N MSE A 690 1555 1555 1.34 LINK C MSE A 690 N PHE A 691 1555 1555 1.32 LINK C GLU A 739 N MSE A 740 1555 1555 1.33 LINK C MSE A 740 N GLU A 741 1555 1555 1.33 LINK C GLU A 741 N MSE A 742 1555 1555 1.34 LINK C THR B 666 N MSE B 667 1555 1555 1.33 LINK C MSE B 667 N SER B 668 1555 1555 1.32 LINK C ALA B 689 N MSE B 690 1555 1555 1.31 LINK C MSE B 690 N PHE B 691 1555 1555 1.33 LINK C THR C 666 N MSE C 667 1555 1555 1.33 LINK C MSE C 667 N SER C 668 1555 1555 1.36 LINK C ALA C 689 N MSE C 690 1555 1555 1.33 LINK C MSE C 690 N PHE C 691 1555 1555 1.36 LINK C GLU C 739 N MSE C 740 1555 1555 1.34 LINK C MSE C 740 N GLU C 741 1555 1555 1.33 LINK C GLU C 741 N MSE C 742 1555 1555 1.34 LINK C MSE C 742 N ASP C 743 1555 1555 1.34 LINK C THR D 666 N MSE D 667 1555 1555 1.32 LINK C MSE D 667 N SER D 668 1555 1555 1.34 LINK C ALA D 689 N MSE D 690 1555 1555 1.33 LINK C MSE D 690 N PHE D 691 1555 1555 1.32 LINK C GLU D 739 N MSE D 740 1555 1555 1.33 CRYST1 62.199 62.199 190.511 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016077 0.009282 0.000000 0.00000 SCALE2 0.000000 0.018565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005249 0.00000