HEADER OXIDOREDUCTASE 13-MAY-13 4BN7 TITLE NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH 2,6- TITLE 2 DICHLOROPHENOLINDOPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER INDUCED NITROREDUCTASE D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE UNCHARACTERIZED PROTEIN YTJD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: - FLAVIN MONONUCLEOTIDE COFACTOR - IN COMPLEX WITH 2, COMPND 7 6-DICHLOROPHENOLINDOPHENOL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 272623; SOURCE 4 STRAIN: IL1403; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5[ALPHA] KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WALTERSPERGER,R.BAUMGARTNER,A.E.OBERHOLZER REVDAT 2 20-DEC-23 4BN7 1 REMARK ATOM REVDAT 1 28-MAY-14 4BN7 0 JRNL AUTH S.WALTERSPERGER,R.BAUMGARTNER,A.E.OBERHOLZER JRNL TITL NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4791 - 3.5839 1.00 2720 144 0.1518 0.1640 REMARK 3 2 3.5839 - 2.8447 1.00 2604 137 0.1417 0.1611 REMARK 3 3 2.8447 - 2.4851 1.00 2593 137 0.1417 0.1754 REMARK 3 4 2.4851 - 2.2579 1.00 2572 135 0.1361 0.1821 REMARK 3 5 2.2579 - 2.0961 1.00 2554 135 0.1367 0.1438 REMARK 3 6 2.0961 - 1.9725 1.00 2552 134 0.1514 0.1929 REMARK 3 7 1.9725 - 1.8737 1.00 2552 135 0.1794 0.1964 REMARK 3 8 1.8737 - 1.7921 1.00 2551 134 0.2020 0.2586 REMARK 3 9 1.7921 - 1.7231 1.00 2513 132 0.2318 0.2675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1580 REMARK 3 ANGLE : 0.983 2150 REMARK 3 CHIRALITY : 0.056 230 REMARK 3 PLANARITY : 0.005 275 REMARK 3 DIHEDRAL : 15.856 575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7042 29.9710 14.0707 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.0571 REMARK 3 T33: 0.1045 T12: 0.0345 REMARK 3 T13: 0.0306 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 4.3861 L22: 1.3445 REMARK 3 L33: 2.3243 L12: -0.3320 REMARK 3 L13: 1.3762 L23: -1.5590 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.2548 S13: 0.0429 REMARK 3 S21: -0.0024 S22: -0.0128 S23: 0.0282 REMARK 3 S31: -0.0899 S32: -0.2444 S33: 0.0559 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 23 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0205 29.3858 2.5182 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1241 REMARK 3 T33: 0.1207 T12: -0.0014 REMARK 3 T13: 0.0066 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 3.5162 L22: 3.8885 REMARK 3 L33: 3.8609 L12: -1.4834 REMARK 3 L13: 2.0761 L23: 0.0363 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.4927 S13: 0.5566 REMARK 3 S21: -0.2161 S22: -0.1551 S23: -0.0009 REMARK 3 S31: -0.3340 S32: 0.1107 S33: 0.1293 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 36 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0833 17.9305 9.5890 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0835 REMARK 3 T33: 0.0875 T12: 0.0150 REMARK 3 T13: 0.0216 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 4.0877 L22: 5.3489 REMARK 3 L33: 5.9841 L12: 3.6368 REMARK 3 L13: -0.6967 L23: 1.8992 REMARK 3 S TENSOR REMARK 3 S11: -0.1227 S12: -0.0349 S13: -0.3165 REMARK 3 S21: 0.0826 S22: 0.0573 S23: -0.1349 REMARK 3 S31: 0.3682 S32: 0.2403 S33: 0.0410 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 46 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4410 17.3795 -1.4123 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1603 REMARK 3 T33: 0.1598 T12: -0.0144 REMARK 3 T13: -0.0520 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 1.6459 L22: 1.6880 REMARK 3 L33: 1.3473 L12: 0.6451 REMARK 3 L13: -1.2154 L23: -0.1908 REMARK 3 S TENSOR REMARK 3 S11: 0.1406 S12: 0.4516 S13: -0.2685 REMARK 3 S21: -0.3702 S22: -0.0679 S23: 0.3400 REMARK 3 S31: 0.2033 S32: -0.2812 S33: -0.0482 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 63 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4064 11.1815 4.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.2897 REMARK 3 T33: 0.4284 T12: -0.0651 REMARK 3 T13: 0.0055 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 3.1207 L22: 3.2858 REMARK 3 L33: 3.6180 L12: 0.5757 REMARK 3 L13: -0.0199 L23: 0.6364 REMARK 3 S TENSOR REMARK 3 S11: -0.1841 S12: 0.0187 S13: -0.6767 REMARK 3 S21: 0.1476 S22: 0.1295 S23: 0.8239 REMARK 3 S31: 0.5365 S32: -0.5269 S33: -0.0580 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5516 9.0971 5.6712 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.1357 REMARK 3 T33: 0.2099 T12: 0.0246 REMARK 3 T13: 0.0257 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 4.3745 L22: 4.6803 REMARK 3 L33: 2.7637 L12: -3.6541 REMARK 3 L13: 1.0292 L23: -0.6837 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: 0.2733 S13: -0.3314 REMARK 3 S21: -0.0639 S22: -0.1039 S23: -0.2400 REMARK 3 S31: 0.4385 S32: 0.4704 S33: 0.0043 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 116 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6659 17.0378 13.3678 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.0848 REMARK 3 T33: 0.0717 T12: -0.0026 REMARK 3 T13: 0.0159 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.3380 L22: 3.3542 REMARK 3 L33: 2.3446 L12: -1.0135 REMARK 3 L13: 0.2842 L23: 0.1046 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: -0.1503 S13: -0.1902 REMARK 3 S21: 0.0248 S22: 0.0229 S23: -0.1673 REMARK 3 S31: 0.2945 S32: 0.1638 S33: 0.0081 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 152 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8927 7.4441 2.1321 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.1713 REMARK 3 T33: 0.2886 T12: -0.0318 REMARK 3 T13: -0.0331 T23: -0.0952 REMARK 3 L TENSOR REMARK 3 L11: 2.3736 L22: 3.2187 REMARK 3 L33: 6.1796 L12: 0.8467 REMARK 3 L13: -0.2312 L23: -1.2948 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.3955 S13: -0.5120 REMARK 3 S21: -0.2444 S22: -0.0901 S23: 0.2629 REMARK 3 S31: 0.5633 S32: -0.1630 S33: 0.0348 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 165 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2101 18.7092 16.9424 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0606 REMARK 3 T33: 0.1217 T12: -0.0317 REMARK 3 T13: 0.0247 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.2924 L22: 0.6434 REMARK 3 L33: 2.0842 L12: -0.1842 REMARK 3 L13: 0.7014 L23: -0.3771 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0401 S13: -0.1006 REMARK 3 S21: -0.0071 S22: 0.0387 S23: 0.0555 REMARK 3 S31: 0.0764 S32: -0.1291 S33: 0.0299 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WQF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.44400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.44400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.05450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.97200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.05450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.97200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.44400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.05450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.97200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.44400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.05450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.97200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.44400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2146 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 75 REMARK 465 GLY A 76 REMARK 465 VAL A 77 REMARK 465 PRO A 78 REMARK 465 GLU A 79 REMARK 465 SER A 80 REMARK 465 ALA A 81 REMARK 465 TRP A 82 REMARK 465 ASP A 83 REMARK 465 ASN A 84 REMARK 465 THR A 85 REMARK 465 ARG A 86 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA A 87 O HOH A 2136 1.97 REMARK 500 O HOH A 2104 O HOH A 2105 2.08 REMARK 500 O HOH A 2003 O HOH A 2004 2.08 REMARK 500 O HOH A 2049 O HOH A 2096 2.12 REMARK 500 O HOH A 2027 O HOH A 2197 2.13 REMARK 500 O HOH A 2016 O HOH A 2048 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2005 O HOH A 2114 6455 2.08 REMARK 500 O HOH A 2101 O HOH A 2224 3555 2.08 REMARK 500 O HOH A 2027 O HOH A 2218 6454 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2023 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A2102 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2105 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RLM A 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BN6 RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH REMARK 900 CHLORAMPHENICOL REMARK 900 RELATED ID: 4BN8 RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH 4- REMARK 900 NITROPHENOL REMARK 900 RELATED ID: 4BN9 RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH REMARK 900 NICOTINIC ACID REMARK 900 RELATED ID: 4BNB RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH 4- REMARK 900 NITROQUINOLINE 1-OXIDE DBREF 4BN7 A 2 202 UNP Q9CED0 Q9CED0_LACLA 2 202 SEQRES 1 A 201 SER PHE ILE LYS SER LEU GLU ASN ARG ARG THR ILE TYR SEQRES 2 A 201 ALA LEU GLY ARG ASN VAL GLN ASP GLU GLU LYS VAL ILE SEQRES 3 A 201 GLU THR ILE LYS GLU ALA VAL ARG PHE SER PRO THR ALA SEQRES 4 A 201 PHE ASN SER GLN THR GLY ARG LEU LEU ILE LEU THR GLY SEQRES 5 A 201 ASP ALA GLN ASP LYS LEU TRP ASP GLU ILE VAL ALA PRO SEQRES 6 A 201 GLU LEU LYS ALA ALA MET GLU ALA GLN GLY VAL PRO GLU SEQRES 7 A 201 SER ALA TRP ASP ASN THR ARG ALA LYS LEU ASP GLY PHE SEQRES 8 A 201 LYS ALA ALA PHE GLY THR ILE LEU PHE PHE GLU ASP GLN SEQRES 9 A 201 ALA VAL VAL LYS ASN LEU GLN GLU GLN PHE ALA LEU TYR SEQRES 10 A 201 ALA ASP ASN PHE PRO VAL TRP SER GLU GLN GLY SER GLY SEQRES 11 A 201 ILE ILE SER VAL ASN VAL TRP THR ALA LEU ALA GLU LEU SEQRES 12 A 201 GLY LEU GLY ALA ASN LEU GLN HIS TYR ASN PRO LEU ILE SEQRES 13 A 201 ASP GLU ALA VAL ALA LYS GLU TRP ASN LEU PRO GLU SER SEQRES 14 A 201 TRP LYS LEU ARG GLY GLN LEU VAL PHE GLY SER ILE GLU SEQRES 15 A 201 ALA PRO ALA GLY GLU LYS THR PHE MET ASP ASP ALA ASP SEQRES 16 A 201 ARG PHE ILE VAL ALA LYS HET FMN A 504 50 HET RLM A1203 26 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM RLM 2,6-BIS(CHLORANYL)-4-[(4-HYDROXYPHENYL)AMINO]PHENOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 RLM C12 H9 CL2 N O2 FORMUL 4 HOH *230(H2 O) HELIX 1 1 SER A 2 ARG A 10 1 9 HELIX 2 2 ASP A 22 PHE A 36 1 15 HELIX 3 3 THR A 39 SER A 43 5 5 HELIX 4 4 GLY A 53 ILE A 63 1 11 HELIX 5 5 ILE A 63 ALA A 74 1 12 HELIX 6 6 ALA A 87 ALA A 94 1 8 HELIX 7 7 GLN A 105 PHE A 115 1 11 HELIX 8 8 ALA A 116 ALA A 119 5 4 HELIX 9 9 ASP A 120 LEU A 144 1 25 HELIX 10 10 ILE A 157 TRP A 165 1 9 HELIX 11 11 ASP A 193 ARG A 197 5 5 SHEET 1 AA 2 LEU A 16 GLY A 17 0 SHEET 2 AA 2 TRP A 171 ILE A 182 -1 O SER A 181 N GLY A 17 SHEET 1 AB 4 GLY A 46 THR A 52 0 SHEET 2 AB 4 GLY A 97 ASP A 104 -1 O THR A 98 N LEU A 51 SHEET 3 AB 4 TRP A 171 ILE A 182 -1 O LYS A 172 N GLU A 103 SHEET 4 AB 4 LEU A 146 GLN A 151 1 O GLY A 147 N GLY A 180 SHEET 1 AC 4 GLY A 46 THR A 52 0 SHEET 2 AC 4 GLY A 97 ASP A 104 -1 O THR A 98 N LEU A 51 SHEET 3 AC 4 TRP A 171 ILE A 182 -1 O LYS A 172 N GLU A 103 SHEET 4 AC 4 LEU A 16 GLY A 17 -1 O GLY A 17 N SER A 181 SHEET 1 AD 2 LEU A 146 GLN A 151 0 SHEET 2 AD 2 TRP A 171 ILE A 182 1 O GLN A 176 N GLN A 151 CISPEP 1 ASN A 154 PRO A 155 0 2.44 SITE 1 AC1 18 ARG A 10 ARG A 11 THR A 12 TYR A 14 SITE 2 AC1 18 PRO A 38 THR A 39 ALA A 40 PHE A 41 SITE 3 AC1 18 ASN A 42 GLN A 128 LEU A 150 GLN A 151 SITE 4 AC1 18 HIS A 152 LYS A 189 RLM A1203 HOH A2039 SITE 5 AC1 18 HOH A2048 HOH A2230 SITE 1 AC2 7 ALA A 40 PHE A 41 TYR A 118 TRP A 125 SITE 2 AC2 7 HIS A 152 TYR A 153 FMN A 504 CRYST1 54.109 121.944 68.888 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014516 0.00000