HEADER HYDROLASE 23-MAY-13 4BPA TITLE CRYSTAL STRUCTURE OF AMPDH2 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX TITLE 2 WITH NAG-NAM-NAG-NAM TETRASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMPDH2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ARTOLA-RECOLONS,S.MARTINEZ-CABALLERO,M.LEE,C.CARRASCO-LOPEZ, AUTHOR 2 D.HESEK,E.SPINK,E.LASTOCHKIN,W.ZHANG,L.HELLMAN,B.BOGGESS, AUTHOR 3 S.MOBASHERY,J.A.HERMOSO REVDAT 3 29-JUL-20 4BPA 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 31-JUL-13 4BPA 1 JRNL REVDAT 1 17-JUL-13 4BPA 0 JRNL AUTH S.MARTINEZ-CABALLERO,M.LEE,C.ARTOLA-RECOLONS, JRNL AUTH 2 C.CARRASCO-LOPEZ,D.HESEK,E.E.SPINK,E.LASTOCHKIN,W.ZHANG, JRNL AUTH 3 L.M.HELLMAN,B.BOGGESS,S.MOBASHERY,J.A.HERMOSO JRNL TITL REACTION PRODUCTS AND THE X-RAY STRUCTURE OF AMPDH2, A JRNL TITL 2 VIRULENCE DETERMINANT OF PSEUDOMONAS AERUGINOSA. JRNL REF J.AM.CHEM.SOC. V. 135 10318 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23819763 JRNL DOI 10.1021/JA405464B REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 3 NUMBER OF REFLECTIONS : 9212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 536 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.570 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.376 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.463 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.847 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3997 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3762 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5463 ; 1.392 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8632 ; 1.101 ; 3.009 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.074 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;32.456 ;23.016 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;17.165 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;17.348 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4519 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 942 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 19 259 B 19 259 12965 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6304 5.9916 32.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.2701 T22: 0.1450 REMARK 3 T33: 0.1948 T12: -0.0444 REMARK 3 T13: -0.0121 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.0334 L22: 0.7426 REMARK 3 L33: 0.9757 L12: 0.0578 REMARK 3 L13: -0.1217 L23: 0.1926 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0119 S13: -0.0052 REMARK 3 S21: 0.0207 S22: 0.0766 S23: 0.0944 REMARK 3 S31: -0.1446 S32: 0.2387 S33: -0.1027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 259 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8988 1.2143 9.4033 REMARK 3 T TENSOR REMARK 3 T11: 0.2216 T22: 0.0947 REMARK 3 T33: 0.2658 T12: -0.0018 REMARK 3 T13: 0.0149 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.0918 L22: 0.8135 REMARK 3 L33: 1.0170 L12: -0.2476 REMARK 3 L13: 0.1435 L23: -0.1094 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.0243 S13: -0.0018 REMARK 3 S21: 0.0172 S22: -0.0459 S23: -0.0194 REMARK 3 S31: -0.0502 S32: -0.0617 S33: 0.0509 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1260 B 1260 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8920 -2.1549 4.4299 REMARK 3 T TENSOR REMARK 3 T11: 0.1090 T22: 0.0230 REMARK 3 T33: 0.5583 T12: -0.0491 REMARK 3 T13: 0.1128 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1260 A 1260 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5860 6.8598 38.5735 REMARK 3 T TENSOR REMARK 3 T11: 0.7737 T22: 0.3950 REMARK 3 T33: 0.4023 T12: 0.0276 REMARK 3 T13: -0.4105 T23: -0.2843 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2023 REMARK 3 RESIDUE RANGE : B 2001 B 2019 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5578 3.0214 26.5711 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.1369 REMARK 3 T33: 0.3275 T12: -0.0253 REMARK 3 T13: 0.0254 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.0957 L22: 0.2310 REMARK 3 L33: 0.7244 L12: 0.0609 REMARK 3 L13: 0.1210 L23: 0.0647 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.0124 S13: 0.0361 REMARK 3 S21: -0.0489 S22: -0.0040 S23: -0.1369 REMARK 3 S31: 0.0025 S32: -0.0947 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1004 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7497 4.2833 -1.6963 REMARK 3 T TENSOR REMARK 3 T11: 0.8215 T22: 1.0758 REMARK 3 T33: 1.2412 T12: -0.1305 REMARK 3 T13: -0.0552 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 6.8375 L22: 19.9804 REMARK 3 L33: 16.5652 L12: -0.3034 REMARK 3 L13: -10.5989 L23: 2.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.4617 S12: 0.3230 S13: 0.2755 REMARK 3 S21: 0.0682 S22: 1.1866 S23: -0.7919 REMARK 3 S31: 0.3649 S32: -0.4301 S33: -0.7249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4BPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97166 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 93.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.1M BIS TRIS PROPANE REMARK 280 PH=7.5, 0.2M POTASSIUM THIOCYANATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 PHE A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 PHE A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 CYS A 17 REMARK 465 SER A 18 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 PHE B 4 REMARK 465 VAL B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 PHE B 9 REMARK 465 THR B 10 REMARK 465 LEU B 11 REMARK 465 SER B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 465 CYS B 17 REMARK 465 SER B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 237 OD2 ASP A 246 2.00 REMARK 500 OD1 ASP A 242 O HOH A 2021 2.09 REMARK 500 O THR B 44 O ASN B 109 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 -167.78 -100.34 REMARK 500 HIS A 57 22.08 -141.64 REMARK 500 ASP A 69 177.32 -58.25 REMARK 500 TRP A 97 72.94 50.25 REMARK 500 ALA A 157 77.64 -150.89 REMARK 500 LEU A 187 -78.63 -49.81 REMARK 500 ALA A 188 -30.55 -39.25 REMARK 500 LEU A 221 52.86 -112.47 REMARK 500 ARG B 22 90.33 -64.25 REMARK 500 HIS B 57 21.54 -141.14 REMARK 500 ASP B 69 171.77 -57.80 REMARK 500 TRP B 97 73.52 50.17 REMARK 500 ALA B 157 79.75 -150.12 REMARK 500 LEU B 221 71.53 -106.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2019 DISTANCE = 7.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1260 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 42 ND1 REMARK 620 2 HIS B 153 ND1 86.7 REMARK 620 3 ASP B 163 OD2 94.1 105.0 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMPDH2 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX REMARK 900 WITH PENTAPEPTIDE DBREF 4BPA A 1 259 UNP Q9HT86 Q9HT86_PSEAE 1 259 DBREF 4BPA B 1 259 UNP Q9HT86 Q9HT86_PSEAE 1 259 SEQRES 1 A 259 MET ARG SER PHE VAL LEU LEU ALA PHE THR LEU SER LEU SEQRES 2 A 259 LEU ALA GLY CYS SER SER GLY PRO ARG LEU ASN THR ASP SEQRES 3 A 259 TYR THR SER ALA ASN GLN ASP SER ARG VAL GLN PHE ILE SEQRES 4 A 259 VAL LEU HIS TYR THR SER THR ASP LEU PRO HIS SER LEU SEQRES 5 A 259 GLY ILE LEU THR HIS GLY GLY VAL SER ALA HIS TYR LEU SEQRES 6 A 259 ILE GLY ASP ASP GLU PRO ALA THR VAL TYR ARG LEU VAL SEQRES 7 A 259 ASP GLU ASN ARG ARG ALA TRP HIS ALA GLY VAL SER GLU SEQRES 8 A 259 TRP GLN GLY ARG THR TRP LEU ASN ALA THR SER ILE GLY SEQRES 9 A 259 ILE GLU ILE VAL ASN GLN GLY TYR ARG ASP THR PRO GLN SEQRES 10 A 259 GLY ARG VAL TRP TYR PRO PHE SER GLU ALA GLN ILE GLN SEQRES 11 A 259 ALA LEU ILE PRO LEU LEU LYS ASP ILE ALA LYS ARG HIS SEQRES 12 A 259 GLY ILE THR PRO ASP ARG ILE ILE GLY HIS SER ASP ILE SEQRES 13 A 259 ALA PRO GLY ARG LYS VAL ASP PRO GLY PRO LEU PHE PRO SEQRES 14 A 259 TRP LYS ARG LEU ALA ASP ALA GLY LEU VAL PRO TRP PRO SEQRES 15 A 259 LYS PRO GLY GLU LEU ALA ARG ARG LEU ALA GLU LEU ASN SEQRES 16 A 259 GLY GLN LEU PRO ASP VAL ARG TRP PHE GLN GLN GLN LEU SEQRES 17 A 259 ALA ARG HIS GLY TYR LEU VAL PRO GLN THR GLY GLU LEU SEQRES 18 A 259 GLU LYS ASP THR ARG ASP VAL ILE GLY ALA PHE GLN MET SEQRES 19 A 259 LYS TYR ARG PRO ALA ARG PHE ASP GLY GLU PRO ASP LEU SEQRES 20 A 259 GLU THR ALA ALA LEU LEU LEU ALA VAL PRO THR SER SEQRES 1 B 259 MET ARG SER PHE VAL LEU LEU ALA PHE THR LEU SER LEU SEQRES 2 B 259 LEU ALA GLY CYS SER SER GLY PRO ARG LEU ASN THR ASP SEQRES 3 B 259 TYR THR SER ALA ASN GLN ASP SER ARG VAL GLN PHE ILE SEQRES 4 B 259 VAL LEU HIS TYR THR SER THR ASP LEU PRO HIS SER LEU SEQRES 5 B 259 GLY ILE LEU THR HIS GLY GLY VAL SER ALA HIS TYR LEU SEQRES 6 B 259 ILE GLY ASP ASP GLU PRO ALA THR VAL TYR ARG LEU VAL SEQRES 7 B 259 ASP GLU ASN ARG ARG ALA TRP HIS ALA GLY VAL SER GLU SEQRES 8 B 259 TRP GLN GLY ARG THR TRP LEU ASN ALA THR SER ILE GLY SEQRES 9 B 259 ILE GLU ILE VAL ASN GLN GLY TYR ARG ASP THR PRO GLN SEQRES 10 B 259 GLY ARG VAL TRP TYR PRO PHE SER GLU ALA GLN ILE GLN SEQRES 11 B 259 ALA LEU ILE PRO LEU LEU LYS ASP ILE ALA LYS ARG HIS SEQRES 12 B 259 GLY ILE THR PRO ASP ARG ILE ILE GLY HIS SER ASP ILE SEQRES 13 B 259 ALA PRO GLY ARG LYS VAL ASP PRO GLY PRO LEU PHE PRO SEQRES 14 B 259 TRP LYS ARG LEU ALA ASP ALA GLY LEU VAL PRO TRP PRO SEQRES 15 B 259 LYS PRO GLY GLU LEU ALA ARG ARG LEU ALA GLU LEU ASN SEQRES 16 B 259 GLY GLN LEU PRO ASP VAL ARG TRP PHE GLN GLN GLN LEU SEQRES 17 B 259 ALA ARG HIS GLY TYR LEU VAL PRO GLN THR GLY GLU LEU SEQRES 18 B 259 GLU LYS ASP THR ARG ASP VAL ILE GLY ALA PHE GLN MET SEQRES 19 B 259 LYS TYR ARG PRO ALA ARG PHE ASP GLY GLU PRO ASP LEU SEQRES 20 B 259 GLU THR ALA ALA LEU LEU LEU ALA VAL PRO THR SER HET AMV C 1 21 HET NAG C 2 14 HET AMU C 3 19 HET NAG C 4 14 HET ZN A1260 1 HET ZN B1260 1 HETNAM AMV METHYL 2-ACETAMIDO-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY- HETNAM 2 AMV BETA-D-GLUCOPYRANOSIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM AMU N-ACETYL-BETA-MURAMIC ACID HETNAM ZN ZINC ION FORMUL 3 AMV C12 H21 N O8 FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 AMU C11 H19 N O8 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *42(H2 O) HELIX 1 1 ASP A 47 GLY A 58 1 12 HELIX 2 2 LEU A 98 ALA A 100 5 3 HELIX 3 3 SER A 125 GLY A 144 1 20 HELIX 4 4 THR A 146 ASP A 148 5 3 HELIX 5 5 HIS A 153 ALA A 157 1 5 HELIX 6 6 PRO A 169 ALA A 176 1 8 HELIX 7 7 GLY A 185 ASN A 195 1 11 HELIX 8 8 ASP A 200 GLY A 212 1 13 HELIX 9 9 GLU A 222 ARG A 237 1 16 HELIX 10 10 ASP A 246 VAL A 256 1 11 HELIX 11 11 ASP B 47 GLY B 58 1 12 HELIX 12 12 LEU B 98 ALA B 100 5 3 HELIX 13 13 SER B 125 GLY B 144 1 20 HELIX 14 14 THR B 146 ASP B 148 5 3 HELIX 15 15 HIS B 153 ALA B 157 1 5 HELIX 16 16 PRO B 169 ALA B 176 1 8 HELIX 17 17 GLY B 185 ASN B 195 1 11 HELIX 18 18 ASP B 200 GLY B 212 1 13 HELIX 19 19 GLU B 222 ARG B 237 1 16 HELIX 20 20 ASP B 246 VAL B 256 1 11 SHEET 1 AA 6 LEU A 23 ASN A 24 0 SHEET 2 AA 6 VAL B 74 ARG B 76 1 O VAL B 74 N ASN A 24 SHEET 3 AA 6 TYR B 64 ILE B 66 -1 O LEU B 65 N TYR B 75 SHEET 4 AA 6 SER B 102 ILE B 107 1 O GLY B 104 N TYR B 64 SHEET 5 AA 6 PHE B 38 LEU B 41 1 O PHE B 38 N ILE B 103 SHEET 6 AA 6 ILE B 150 GLY B 152 1 O ILE B 151 N LEU B 41 SHEET 1 AB 2 GLN A 32 ASP A 33 0 SHEET 2 AB 2 ARG B 83 ALA B 84 -1 O ARG B 83 N ASP A 33 SHEET 1 AC 6 ILE A 150 GLY A 152 0 SHEET 2 AC 6 PHE A 38 LEU A 41 1 O ILE A 39 N ILE A 151 SHEET 3 AC 6 SER A 102 ILE A 107 1 O ILE A 103 N VAL A 40 SHEET 4 AC 6 TYR A 64 ILE A 66 1 O TYR A 64 N GLU A 106 SHEET 5 AC 6 VAL A 74 ARG A 76 -1 O TYR A 75 N LEU A 65 SHEET 6 AC 6 LEU B 23 ASN B 24 1 O ASN B 24 N ARG A 76 SHEET 1 AD 2 ARG A 83 ALA A 84 0 SHEET 2 AD 2 GLN B 32 ASP B 33 -1 O ASP B 33 N ARG A 83 SHEET 1 AE 2 GLU A 91 TRP A 92 0 SHEET 2 AE 2 ARG A 95 THR A 96 -1 O ARG A 95 N TRP A 92 SHEET 1 AF 2 TYR A 112 THR A 115 0 SHEET 2 AF 2 GLY A 118 TRP A 121 -1 O GLY A 118 N THR A 115 SHEET 1 BA 2 GLU B 91 TRP B 92 0 SHEET 2 BA 2 ARG B 95 THR B 96 -1 O ARG B 95 N TRP B 92 SHEET 1 BB 2 TYR B 112 THR B 115 0 SHEET 2 BB 2 GLY B 118 TRP B 121 -1 O GLY B 118 N THR B 115 LINK O4 AMV C 1 C1 NAG C 2 1555 1555 1.51 LINK O4 NAG C 2 C1 AMU C 3 1555 1555 1.50 LINK O4 AMU C 3 C1 NAG C 4 1555 1555 1.51 LINK OD2 ASP A 163 ZN ZN A1260 1555 1555 2.51 LINK ND1 HIS B 42 ZN ZN B1260 1555 1555 2.24 LINK ND1 HIS B 153 ZN ZN B1260 1555 1555 2.34 LINK OD2 ASP B 163 ZN ZN B1260 1555 1555 2.05 CISPEP 1 GLU A 70 PRO A 71 0 2.97 CISPEP 2 ASP A 163 PRO A 164 0 7.37 CISPEP 3 GLU B 70 PRO B 71 0 -3.47 CISPEP 4 ASP B 163 PRO B 164 0 7.69 CRYST1 45.230 93.560 104.350 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009583 0.00000