HEADER CELL ADHESION 30-MAY-13 4BQ9
TITLE CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NEOGENIN;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: FN-TYPE III DOMAINS 5 AND 6, RESIDUES 883-1083;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: N-LINKED GLYCOSYLATION AT N940
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC
KEYWDS CELL ADHESION
EXPDTA X-RAY DIFFRACTION
AUTHOR C.H.BELL,E.HEALEY,S.VAN ERP,B.BISHOP,C.TANG,R.J.C.GILBERT,
AUTHOR 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD
REVDAT 6 13-NOV-24 4BQ9 1 HETSYN
REVDAT 5 29-JUL-20 4BQ9 1 COMPND REMARK HETNAM LINK
REVDAT 5 2 1 SITE
REVDAT 4 03-APR-19 4BQ9 1 SOURCE LINK
REVDAT 3 17-JUL-13 4BQ9 1 JRNL
REVDAT 2 19-JUN-13 4BQ9 1 JRNL
REVDAT 1 12-JUN-13 4BQ9 0
JRNL AUTH C.H.BELL,E.HEALEY,S.VAN ERP,B.BISHOP,C.TANG,R.J.C.GILBERT,
JRNL AUTH 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD
JRNL TITL STRUCTURE OF THE REPULSIVE GUIDANCE MOLECULE (RGM)-NEOGENIN
JRNL TITL 2 SIGNALING HUB
JRNL REF SCIENCE V. 341 77 2013
JRNL REFN ISSN 0036-8075
JRNL PMID 23744777
JRNL DOI 10.1126/SCIENCE.1232322
REMARK 2
REMARK 2 RESOLUTION. 2.91 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 15443
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.206
REMARK 3 R VALUE (WORKING SET) : 0.205
REMARK 3 FREE R VALUE : 0.230
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010
REMARK 3 FREE R VALUE TEST SET COUNT : 774
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 8
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.11
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2737
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2733
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2580
REMARK 3 BIN R VALUE (WORKING SET) : 0.2709
REMARK 3 BIN FREE R VALUE : 0.3159
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.74
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3109
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 28
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 72.12
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.09
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -5.53690
REMARK 3 B22 (A**2) : -5.53690
REMARK 3 B33 (A**2) : 11.07380
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.475
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.589
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.293
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.619
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.301
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3223 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4405 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1073 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 64 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 457 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3223 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 457 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3534 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.20
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.00
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.72
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|883 - A|982 }
REMARK 3 ORIGIN FOR THE GROUP (A): 58.0909 -14.0635 -21.9490
REMARK 3 T TENSOR
REMARK 3 T11: 0.1606 T22: -0.3419
REMARK 3 T33: -0.2006 T12: -0.0116
REMARK 3 T13: 0.0124 T23: -0.0202
REMARK 3 L TENSOR
REMARK 3 L11: 4.3798 L22: 9.2761
REMARK 3 L33: 5.3320 L12: -0.1417
REMARK 3 L13: -0.0006 L23: -1.0751
REMARK 3 S TENSOR
REMARK 3 S11: -0.1721 S12: 0.5230 S13: -0.5888
REMARK 3 S21: -1.2004 S22: 0.1118 S23: 0.2117
REMARK 3 S31: 0.2940 S32: -0.2185 S33: 0.0603
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|983 - A|1087 }
REMARK 3 ORIGIN FOR THE GROUP (A): 43.9611 2.5283 17.5373
REMARK 3 T TENSOR
REMARK 3 T11: 0.1471 T22: -0.2342
REMARK 3 T33: -0.0612 T12: 0.0788
REMARK 3 T13: -0.0272 T23: -0.0023
REMARK 3 L TENSOR
REMARK 3 L11: 2.5206 L22: 1.1963
REMARK 3 L33: 7.6616 L12: 0.7440
REMARK 3 L13: -3.1382 L23: -0.3518
REMARK 3 S TENSOR
REMARK 3 S11: 0.1037 S12: 0.0432 S13: 0.1546
REMARK 3 S21: -0.3775 S22: -0.2250 S23: 0.0307
REMARK 3 S31: 0.0265 S32: 0.0260 S33: 0.1212
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { B|884 - B|982 }
REMARK 3 ORIGIN FOR THE GROUP (A): 73.7176 -10.9528 -6.3794
REMARK 3 T TENSOR
REMARK 3 T11: -0.0924 T22: -0.1899
REMARK 3 T33: 0.3048 T12: 0.0635
REMARK 3 T13: -0.1941 T23: -0.1753
REMARK 3 L TENSOR
REMARK 3 L11: 3.6968 L22: 3.0806
REMARK 3 L33: 2.2092 L12: 0.0669
REMARK 3 L13: 0.7196 L23: 0.5423
REMARK 3 S TENSOR
REMARK 3 S11: -0.3684 S12: -0.6248 S13: 0.7979
REMARK 3 S21: 0.5812 S22: 0.5049 S23: -1.4241
REMARK 3 S31: -0.2347 S32: 0.7352 S33: -0.1365
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { B|983 - B|1083 }
REMARK 3 ORIGIN FOR THE GROUP (A): 60.7671 -51.5162 -14.9812
REMARK 3 T TENSOR
REMARK 3 T11: -0.3058 T22: -0.1350
REMARK 3 T33: 0.1427 T12: -0.0370
REMARK 3 T13: 0.0122 T23: -0.1388
REMARK 3 L TENSOR
REMARK 3 L11: 8.5666 L22: 5.1660
REMARK 3 L33: 2.3664 L12: 3.4033
REMARK 3 L13: 0.2488 L23: -0.9272
REMARK 3 S TENSOR
REMARK 3 S11: -0.0696 S12: 0.5769 S13: -1.7658
REMARK 3 S21: -0.1500 S22: 0.1442 S23: -0.0760
REMARK 3 S31: 0.5263 S32: -0.4719 S33: -0.0746
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NEO1 CHAIN B RESIDUES P883, K912-I916,
REMARK 3 P931-N933, K965-S969, G1084-H1087 MISSING BECAUSE OF DISORDER
REMARK 4
REMARK 4 4BQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-13.
REMARK 100 THE DEPOSITION ID IS D_1290057068.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID14-4
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.93930
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15545
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 4.200
REMARK 200 R MERGE (I) : 0.14000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 4.30
REMARK 200 R MERGE FOR SHELL (I) : 0.87000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 68.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5, 0.2 M SODIUM
REMARK 280 ACETATE, 30% PEG4000
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.92533
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.85067
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.85067
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.92533
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU A 880
REMARK 465 THR A 881
REMARK 465 GLY A 882
REMARK 465 HIS A 1088
REMARK 465 HIS A 1089
REMARK 465 HIS A 1090
REMARK 465 HIS A 1091
REMARK 465 HIS A 1092
REMARK 465 GLU B 880
REMARK 465 THR B 881
REMARK 465 GLY B 882
REMARK 465 THR B 883
REMARK 465 LYS B 912
REMARK 465 HIS B 913
REMARK 465 GLN B 914
REMARK 465 LYS B 915
REMARK 465 ILE B 916
REMARK 465 PRO B 931
REMARK 465 ALA B 932
REMARK 465 ASN B 933
REMARK 465 LYS B 965
REMARK 465 GLY B 966
REMARK 465 ARG B 967
REMARK 465 ARG B 968
REMARK 465 SER B 969
REMARK 465 GLY B 1084
REMARK 465 THR B 1085
REMARK 465 LYS B 1086
REMARK 465 HIS B 1087
REMARK 465 HIS B 1088
REMARK 465 HIS B 1089
REMARK 465 HIS B 1090
REMARK 465 HIS B 1091
REMARK 465 HIS B 1092
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 912 -36.56 -38.18
REMARK 500 LEU A 944 42.05 -89.05
REMARK 500 ASP A 991 53.74 39.88
REMARK 500 GLU A1013 66.45 -100.72
REMARK 500 ASN A1015 14.21 58.02
REMARK 500 LYS A1086 -63.32 -91.07
REMARK 500 LEU B 944 42.01 -89.25
REMARK 500 GLU B1013 67.79 -100.44
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 N-ACETYL-D-GLUCOSAMINE (NAG): N-LINKED GLYCOSYLATION OF
REMARK 600 NEO1 ASN940
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4BQ6 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 1
REMARK 900 RELATED ID: 4BQ7 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 2
REMARK 900 RELATED ID: 4BQ8 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 3
REMARK 900 RELATED ID: 4BQB RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 2
REMARK 900 RELATED ID: 4BQC RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1 BOUND TO SOS
DBREF 4BQ9 A 883 1083 UNP P97798 NEO1_MOUSE 883 1083
DBREF 4BQ9 B 883 1083 UNP P97798 NEO1_MOUSE 883 1083
SEQADV 4BQ9 GLU A 880 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 THR A 881 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 GLY A 882 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 GLY A 1084 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 THR A 1085 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 LYS A 1086 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS A 1087 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS A 1088 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS A 1089 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS A 1090 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS A 1091 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS A 1092 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 GLU B 880 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 THR B 881 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 GLY B 882 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 GLY B 1084 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 THR B 1085 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 LYS B 1086 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS B 1087 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS B 1088 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS B 1089 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS B 1090 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS B 1091 UNP P97798 EXPRESSION TAG
SEQADV 4BQ9 HIS B 1092 UNP P97798 EXPRESSION TAG
SEQRES 1 A 213 GLU THR GLY THR PRO MET MET PRO PRO VAL GLY VAL GLN
SEQRES 2 A 213 ALA SER ILE LEU SER HIS ASP THR ILE ARG ILE THR TRP
SEQRES 3 A 213 ALA ASP ASN SER LEU PRO LYS HIS GLN LYS ILE THR ASP
SEQRES 4 A 213 SER ARG TYR TYR THR VAL ARG TRP LYS THR ASN ILE PRO
SEQRES 5 A 213 ALA ASN THR LYS TYR LYS ASN ALA ASN ALA THR THR LEU
SEQRES 6 A 213 SER TYR LEU VAL THR GLY LEU LYS PRO ASN THR LEU TYR
SEQRES 7 A 213 GLU PHE SER VAL MET VAL THR LYS GLY ARG ARG SER SER
SEQRES 8 A 213 THR TRP SER MET THR ALA HIS GLY ALA THR PHE GLU LEU
SEQRES 9 A 213 VAL PRO THR SER PRO PRO LYS ASP VAL THR VAL VAL SER
SEQRES 10 A 213 LYS GLU GLY LYS PRO ARG THR ILE ILE VAL ASN TRP GLN
SEQRES 11 A 213 PRO PRO SER GLU ALA ASN GLY LYS ILE THR GLY TYR ILE
SEQRES 12 A 213 ILE TYR TYR SER THR ASP VAL ASN ALA GLU ILE HIS ASP
SEQRES 13 A 213 TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG LEU THR HIS
SEQRES 14 A 213 GLN ILE GLN GLU LEU THR LEU ASP THR PRO TYR TYR PHE
SEQRES 15 A 213 LYS ILE GLN ALA ARG ASN SER LYS GLY MET GLY PRO MET
SEQRES 16 A 213 SER GLU ALA VAL GLN PHE ARG THR PRO GLY THR LYS HIS
SEQRES 17 A 213 HIS HIS HIS HIS HIS
SEQRES 1 B 213 GLU THR GLY THR PRO MET MET PRO PRO VAL GLY VAL GLN
SEQRES 2 B 213 ALA SER ILE LEU SER HIS ASP THR ILE ARG ILE THR TRP
SEQRES 3 B 213 ALA ASP ASN SER LEU PRO LYS HIS GLN LYS ILE THR ASP
SEQRES 4 B 213 SER ARG TYR TYR THR VAL ARG TRP LYS THR ASN ILE PRO
SEQRES 5 B 213 ALA ASN THR LYS TYR LYS ASN ALA ASN ALA THR THR LEU
SEQRES 6 B 213 SER TYR LEU VAL THR GLY LEU LYS PRO ASN THR LEU TYR
SEQRES 7 B 213 GLU PHE SER VAL MET VAL THR LYS GLY ARG ARG SER SER
SEQRES 8 B 213 THR TRP SER MET THR ALA HIS GLY ALA THR PHE GLU LEU
SEQRES 9 B 213 VAL PRO THR SER PRO PRO LYS ASP VAL THR VAL VAL SER
SEQRES 10 B 213 LYS GLU GLY LYS PRO ARG THR ILE ILE VAL ASN TRP GLN
SEQRES 11 B 213 PRO PRO SER GLU ALA ASN GLY LYS ILE THR GLY TYR ILE
SEQRES 12 B 213 ILE TYR TYR SER THR ASP VAL ASN ALA GLU ILE HIS ASP
SEQRES 13 B 213 TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG LEU THR HIS
SEQRES 14 B 213 GLN ILE GLN GLU LEU THR LEU ASP THR PRO TYR TYR PHE
SEQRES 15 B 213 LYS ILE GLN ALA ARG ASN SER LYS GLY MET GLY PRO MET
SEQRES 16 B 213 SER GLU ALA VAL GLN PHE ARG THR PRO GLY THR LYS HIS
SEQRES 17 B 213 HIS HIS HIS HIS HIS
MODRES 4BQ9 ASN A 940 ASN GLYCOSYLATION SITE
MODRES 4BQ9 ASN B 940 ASN GLYCOSYLATION SITE
HET NAG A2088 14
HET NAG B2084 14
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 3 NAG 2(C8 H15 N O6)
HELIX 1 1 GLU A 1032 TRP A 1036 5 5
HELIX 2 2 GLU B 1032 TRP B 1036 5 5
SHEET 1 AA 3 VAL A 889 ILE A 895 0
SHEET 2 AA 3 ILE A 901 ALA A 906 -1 O ARG A 902 N SER A 894
SHEET 3 AA 3 SER A 945 VAL A 948 -1 O TYR A 946 N ILE A 903
SHEET 1 AB 4 LYS A 937 ALA A 941 0
SHEET 2 AB 4 TYR A 921 THR A 928 -1 O TYR A 922 N ALA A 941
SHEET 3 AB 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927
SHEET 4 AB 4 ARG A 968 SER A 969 -1 O ARG A 968 N LYS A 965
SHEET 1 AC 4 LYS A 937 ALA A 941 0
SHEET 2 AC 4 TYR A 921 THR A 928 -1 O TYR A 922 N ALA A 941
SHEET 3 AC 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927
SHEET 4 AC 4 ALA A 976 ALA A 979 -1 O ALA A 976 N PHE A 959
SHEET 1 AD 2 ARG A 968 SER A 969 0
SHEET 2 AD 2 LEU A 956 LYS A 965 -1 O LYS A 965 N ARG A 968
SHEET 1 AE 3 LYS A 990 LYS A 997 0
SHEET 2 AE 3 LYS A1000 GLN A1009 -1 N LYS A1000 O LYS A 997
SHEET 3 AE 3 THR A1047 ILE A1050 -1 O HIS A1048 N VAL A1006
SHEET 1 AF 4 VAL A1037 VAL A1042 0
SHEET 2 AF 4 ILE A1018 SER A1026 -1 O TYR A1021 N VAL A1041
SHEET 3 AF 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026
SHEET 4 AF 4 GLY A1070 MET A1074 -1 O GLY A1070 N ASN A1067
SHEET 1 AG 4 VAL A1037 VAL A1042 0
SHEET 2 AG 4 ILE A1018 SER A1026 -1 O TYR A1021 N VAL A1041
SHEET 3 AG 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026
SHEET 4 AG 4 VAL A1078 ARG A1081 -1 O VAL A1078 N PHE A1061
SHEET 1 AH 2 GLY A1070 MET A1074 0
SHEET 2 AH 2 PRO A1058 ASN A1067 -1 O ALA A1065 N GLY A1072
SHEET 1 BA 3 VAL B 889 ILE B 895 0
SHEET 2 BA 3 ILE B 901 ALA B 906 -1 O ARG B 902 N SER B 894
SHEET 3 BA 3 SER B 945 VAL B 948 -1 O TYR B 946 N ILE B 903
SHEET 1 BB 4 LYS B 937 ALA B 941 0
SHEET 2 BB 4 TYR B 921 THR B 928 -1 O TYR B 922 N ALA B 941
SHEET 3 BB 4 LEU B 956 THR B 964 -1 O GLU B 958 N LYS B 927
SHEET 4 BB 4 ALA B 976 ALA B 979 -1 O ALA B 976 N PHE B 959
SHEET 1 BC 3 LYS B 990 LYS B 997 0
SHEET 2 BC 3 LYS B1000 GLN B1009 -1 N LYS B1000 O LYS B 997
SHEET 3 BC 3 THR B1047 ILE B1050 -1 O HIS B1048 N VAL B1006
SHEET 1 BD 4 VAL B1037 VAL B1042 0
SHEET 2 BD 4 ILE B1018 SER B1026 -1 O TYR B1021 N VAL B1041
SHEET 3 BD 4 PRO B1058 ASN B1067 -1 O TYR B1060 N SER B1026
SHEET 4 BD 4 GLY B1070 MET B1074 -1 O GLY B1070 N ASN B1067
SHEET 1 BE 4 VAL B1037 VAL B1042 0
SHEET 2 BE 4 ILE B1018 SER B1026 -1 O TYR B1021 N VAL B1041
SHEET 3 BE 4 PRO B1058 ASN B1067 -1 O TYR B1060 N SER B1026
SHEET 4 BE 4 VAL B1078 ARG B1081 -1 O VAL B1078 N PHE B1061
SHEET 1 BF 2 GLY B1070 MET B1074 0
SHEET 2 BF 2 PRO B1058 ASN B1067 -1 O ALA B1065 N GLY B1072
LINK ND2 ASN A 940 C1 NAG A2088 1555 1555 1.43
LINK ND2 ASN B 940 C1 NAG B2084 1555 1555 1.43
CISPEP 1 ILE A 930 PRO A 931 0 3.87
CRYST1 103.551 103.551 110.776 90.00 90.00 120.00 P 31 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009657 0.005576 0.000000 0.00000
SCALE2 0.000000 0.011151 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009027 0.00000
MTRIX1 1 -0.395400 0.608500 -0.688000 89.49000 1
MTRIX2 1 0.568600 -0.426100 -0.703600 -64.33000 1
MTRIX3 1 -0.721300 -0.669400 -0.177600 23.73000 1