HEADER CELL ADHESION 30-MAY-13 4BQ9 TITLE CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FN-TYPE III DOMAINS 5 AND 6, RESIDUES 883-1083; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: N-LINKED GLYCOSYLATION AT N940 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR C.H.BELL,E.HEALEY,S.VAN ERP,B.BISHOP,C.TANG,R.J.C.GILBERT, AUTHOR 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD REVDAT 6 13-NOV-24 4BQ9 1 HETSYN REVDAT 5 29-JUL-20 4BQ9 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 03-APR-19 4BQ9 1 SOURCE LINK REVDAT 3 17-JUL-13 4BQ9 1 JRNL REVDAT 2 19-JUN-13 4BQ9 1 JRNL REVDAT 1 12-JUN-13 4BQ9 0 JRNL AUTH C.H.BELL,E.HEALEY,S.VAN ERP,B.BISHOP,C.TANG,R.J.C.GILBERT, JRNL AUTH 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD JRNL TITL STRUCTURE OF THE REPULSIVE GUIDANCE MOLECULE (RGM)-NEOGENIN JRNL TITL 2 SIGNALING HUB JRNL REF SCIENCE V. 341 77 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23744777 JRNL DOI 10.1126/SCIENCE.1232322 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.11 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2737 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2733 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2580 REMARK 3 BIN R VALUE (WORKING SET) : 0.2709 REMARK 3 BIN FREE R VALUE : 0.3159 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.74 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.53690 REMARK 3 B22 (A**2) : -5.53690 REMARK 3 B33 (A**2) : 11.07380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.475 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.589 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.293 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.619 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.301 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3223 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4405 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1073 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 64 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 457 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3223 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 457 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3534 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.00 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.72 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|883 - A|982 } REMARK 3 ORIGIN FOR THE GROUP (A): 58.0909 -14.0635 -21.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: -0.3419 REMARK 3 T33: -0.2006 T12: -0.0116 REMARK 3 T13: 0.0124 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.3798 L22: 9.2761 REMARK 3 L33: 5.3320 L12: -0.1417 REMARK 3 L13: -0.0006 L23: -1.0751 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: 0.5230 S13: -0.5888 REMARK 3 S21: -1.2004 S22: 0.1118 S23: 0.2117 REMARK 3 S31: 0.2940 S32: -0.2185 S33: 0.0603 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|983 - A|1087 } REMARK 3 ORIGIN FOR THE GROUP (A): 43.9611 2.5283 17.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: -0.2342 REMARK 3 T33: -0.0612 T12: 0.0788 REMARK 3 T13: -0.0272 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.5206 L22: 1.1963 REMARK 3 L33: 7.6616 L12: 0.7440 REMARK 3 L13: -3.1382 L23: -0.3518 REMARK 3 S TENSOR REMARK 3 S11: 0.1037 S12: 0.0432 S13: 0.1546 REMARK 3 S21: -0.3775 S22: -0.2250 S23: 0.0307 REMARK 3 S31: 0.0265 S32: 0.0260 S33: 0.1212 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|884 - B|982 } REMARK 3 ORIGIN FOR THE GROUP (A): 73.7176 -10.9528 -6.3794 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: -0.1899 REMARK 3 T33: 0.3048 T12: 0.0635 REMARK 3 T13: -0.1941 T23: -0.1753 REMARK 3 L TENSOR REMARK 3 L11: 3.6968 L22: 3.0806 REMARK 3 L33: 2.2092 L12: 0.0669 REMARK 3 L13: 0.7196 L23: 0.5423 REMARK 3 S TENSOR REMARK 3 S11: -0.3684 S12: -0.6248 S13: 0.7979 REMARK 3 S21: 0.5812 S22: 0.5049 S23: -1.4241 REMARK 3 S31: -0.2347 S32: 0.7352 S33: -0.1365 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|983 - B|1083 } REMARK 3 ORIGIN FOR THE GROUP (A): 60.7671 -51.5162 -14.9812 REMARK 3 T TENSOR REMARK 3 T11: -0.3058 T22: -0.1350 REMARK 3 T33: 0.1427 T12: -0.0370 REMARK 3 T13: 0.0122 T23: -0.1388 REMARK 3 L TENSOR REMARK 3 L11: 8.5666 L22: 5.1660 REMARK 3 L33: 2.3664 L12: 3.4033 REMARK 3 L13: 0.2488 L23: -0.9272 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: 0.5769 S13: -1.7658 REMARK 3 S21: -0.1500 S22: 0.1442 S23: -0.0760 REMARK 3 S31: 0.5263 S32: -0.4719 S33: -0.0746 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NEO1 CHAIN B RESIDUES P883, K912-I916, REMARK 3 P931-N933, K965-S969, G1084-H1087 MISSING BECAUSE OF DISORDER REMARK 4 REMARK 4 4BQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290057068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5, 0.2 M SODIUM REMARK 280 ACETATE, 30% PEG4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.92533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.85067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.85067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.92533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 880 REMARK 465 THR A 881 REMARK 465 GLY A 882 REMARK 465 HIS A 1088 REMARK 465 HIS A 1089 REMARK 465 HIS A 1090 REMARK 465 HIS A 1091 REMARK 465 HIS A 1092 REMARK 465 GLU B 880 REMARK 465 THR B 881 REMARK 465 GLY B 882 REMARK 465 THR B 883 REMARK 465 LYS B 912 REMARK 465 HIS B 913 REMARK 465 GLN B 914 REMARK 465 LYS B 915 REMARK 465 ILE B 916 REMARK 465 PRO B 931 REMARK 465 ALA B 932 REMARK 465 ASN B 933 REMARK 465 LYS B 965 REMARK 465 GLY B 966 REMARK 465 ARG B 967 REMARK 465 ARG B 968 REMARK 465 SER B 969 REMARK 465 GLY B 1084 REMARK 465 THR B 1085 REMARK 465 LYS B 1086 REMARK 465 HIS B 1087 REMARK 465 HIS B 1088 REMARK 465 HIS B 1089 REMARK 465 HIS B 1090 REMARK 465 HIS B 1091 REMARK 465 HIS B 1092 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 912 -36.56 -38.18 REMARK 500 LEU A 944 42.05 -89.05 REMARK 500 ASP A 991 53.74 39.88 REMARK 500 GLU A1013 66.45 -100.72 REMARK 500 ASN A1015 14.21 58.02 REMARK 500 LYS A1086 -63.32 -91.07 REMARK 500 LEU B 944 42.01 -89.25 REMARK 500 GLU B1013 67.79 -100.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 N-ACETYL-D-GLUCOSAMINE (NAG): N-LINKED GLYCOSYLATION OF REMARK 600 NEO1 ASN940 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BQ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 1 REMARK 900 RELATED ID: 4BQ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 2 REMARK 900 RELATED ID: 4BQ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 3 REMARK 900 RELATED ID: 4BQB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 2 REMARK 900 RELATED ID: 4BQC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1 BOUND TO SOS DBREF 4BQ9 A 883 1083 UNP P97798 NEO1_MOUSE 883 1083 DBREF 4BQ9 B 883 1083 UNP P97798 NEO1_MOUSE 883 1083 SEQADV 4BQ9 GLU A 880 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 THR A 881 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 GLY A 882 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 GLY A 1084 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 THR A 1085 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 LYS A 1086 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS A 1087 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS A 1088 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS A 1089 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS A 1090 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS A 1091 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS A 1092 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 GLU B 880 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 THR B 881 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 GLY B 882 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 GLY B 1084 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 THR B 1085 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 LYS B 1086 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS B 1087 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS B 1088 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS B 1089 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS B 1090 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS B 1091 UNP P97798 EXPRESSION TAG SEQADV 4BQ9 HIS B 1092 UNP P97798 EXPRESSION TAG SEQRES 1 A 213 GLU THR GLY THR PRO MET MET PRO PRO VAL GLY VAL GLN SEQRES 2 A 213 ALA SER ILE LEU SER HIS ASP THR ILE ARG ILE THR TRP SEQRES 3 A 213 ALA ASP ASN SER LEU PRO LYS HIS GLN LYS ILE THR ASP SEQRES 4 A 213 SER ARG TYR TYR THR VAL ARG TRP LYS THR ASN ILE PRO SEQRES 5 A 213 ALA ASN THR LYS TYR LYS ASN ALA ASN ALA THR THR LEU SEQRES 6 A 213 SER TYR LEU VAL THR GLY LEU LYS PRO ASN THR LEU TYR SEQRES 7 A 213 GLU PHE SER VAL MET VAL THR LYS GLY ARG ARG SER SER SEQRES 8 A 213 THR TRP SER MET THR ALA HIS GLY ALA THR PHE GLU LEU SEQRES 9 A 213 VAL PRO THR SER PRO PRO LYS ASP VAL THR VAL VAL SER SEQRES 10 A 213 LYS GLU GLY LYS PRO ARG THR ILE ILE VAL ASN TRP GLN SEQRES 11 A 213 PRO PRO SER GLU ALA ASN GLY LYS ILE THR GLY TYR ILE SEQRES 12 A 213 ILE TYR TYR SER THR ASP VAL ASN ALA GLU ILE HIS ASP SEQRES 13 A 213 TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG LEU THR HIS SEQRES 14 A 213 GLN ILE GLN GLU LEU THR LEU ASP THR PRO TYR TYR PHE SEQRES 15 A 213 LYS ILE GLN ALA ARG ASN SER LYS GLY MET GLY PRO MET SEQRES 16 A 213 SER GLU ALA VAL GLN PHE ARG THR PRO GLY THR LYS HIS SEQRES 17 A 213 HIS HIS HIS HIS HIS SEQRES 1 B 213 GLU THR GLY THR PRO MET MET PRO PRO VAL GLY VAL GLN SEQRES 2 B 213 ALA SER ILE LEU SER HIS ASP THR ILE ARG ILE THR TRP SEQRES 3 B 213 ALA ASP ASN SER LEU PRO LYS HIS GLN LYS ILE THR ASP SEQRES 4 B 213 SER ARG TYR TYR THR VAL ARG TRP LYS THR ASN ILE PRO SEQRES 5 B 213 ALA ASN THR LYS TYR LYS ASN ALA ASN ALA THR THR LEU SEQRES 6 B 213 SER TYR LEU VAL THR GLY LEU LYS PRO ASN THR LEU TYR SEQRES 7 B 213 GLU PHE SER VAL MET VAL THR LYS GLY ARG ARG SER SER SEQRES 8 B 213 THR TRP SER MET THR ALA HIS GLY ALA THR PHE GLU LEU SEQRES 9 B 213 VAL PRO THR SER PRO PRO LYS ASP VAL THR VAL VAL SER SEQRES 10 B 213 LYS GLU GLY LYS PRO ARG THR ILE ILE VAL ASN TRP GLN SEQRES 11 B 213 PRO PRO SER GLU ALA ASN GLY LYS ILE THR GLY TYR ILE SEQRES 12 B 213 ILE TYR TYR SER THR ASP VAL ASN ALA GLU ILE HIS ASP SEQRES 13 B 213 TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG LEU THR HIS SEQRES 14 B 213 GLN ILE GLN GLU LEU THR LEU ASP THR PRO TYR TYR PHE SEQRES 15 B 213 LYS ILE GLN ALA ARG ASN SER LYS GLY MET GLY PRO MET SEQRES 16 B 213 SER GLU ALA VAL GLN PHE ARG THR PRO GLY THR LYS HIS SEQRES 17 B 213 HIS HIS HIS HIS HIS MODRES 4BQ9 ASN A 940 ASN GLYCOSYLATION SITE MODRES 4BQ9 ASN B 940 ASN GLYCOSYLATION SITE HET NAG A2088 14 HET NAG B2084 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) HELIX 1 1 GLU A 1032 TRP A 1036 5 5 HELIX 2 2 GLU B 1032 TRP B 1036 5 5 SHEET 1 AA 3 VAL A 889 ILE A 895 0 SHEET 2 AA 3 ILE A 901 ALA A 906 -1 O ARG A 902 N SER A 894 SHEET 3 AA 3 SER A 945 VAL A 948 -1 O TYR A 946 N ILE A 903 SHEET 1 AB 4 LYS A 937 ALA A 941 0 SHEET 2 AB 4 TYR A 921 THR A 928 -1 O TYR A 922 N ALA A 941 SHEET 3 AB 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927 SHEET 4 AB 4 ARG A 968 SER A 969 -1 O ARG A 968 N LYS A 965 SHEET 1 AC 4 LYS A 937 ALA A 941 0 SHEET 2 AC 4 TYR A 921 THR A 928 -1 O TYR A 922 N ALA A 941 SHEET 3 AC 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927 SHEET 4 AC 4 ALA A 976 ALA A 979 -1 O ALA A 976 N PHE A 959 SHEET 1 AD 2 ARG A 968 SER A 969 0 SHEET 2 AD 2 LEU A 956 LYS A 965 -1 O LYS A 965 N ARG A 968 SHEET 1 AE 3 LYS A 990 LYS A 997 0 SHEET 2 AE 3 LYS A1000 GLN A1009 -1 N LYS A1000 O LYS A 997 SHEET 3 AE 3 THR A1047 ILE A1050 -1 O HIS A1048 N VAL A1006 SHEET 1 AF 4 VAL A1037 VAL A1042 0 SHEET 2 AF 4 ILE A1018 SER A1026 -1 O TYR A1021 N VAL A1041 SHEET 3 AF 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026 SHEET 4 AF 4 GLY A1070 MET A1074 -1 O GLY A1070 N ASN A1067 SHEET 1 AG 4 VAL A1037 VAL A1042 0 SHEET 2 AG 4 ILE A1018 SER A1026 -1 O TYR A1021 N VAL A1041 SHEET 3 AG 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026 SHEET 4 AG 4 VAL A1078 ARG A1081 -1 O VAL A1078 N PHE A1061 SHEET 1 AH 2 GLY A1070 MET A1074 0 SHEET 2 AH 2 PRO A1058 ASN A1067 -1 O ALA A1065 N GLY A1072 SHEET 1 BA 3 VAL B 889 ILE B 895 0 SHEET 2 BA 3 ILE B 901 ALA B 906 -1 O ARG B 902 N SER B 894 SHEET 3 BA 3 SER B 945 VAL B 948 -1 O TYR B 946 N ILE B 903 SHEET 1 BB 4 LYS B 937 ALA B 941 0 SHEET 2 BB 4 TYR B 921 THR B 928 -1 O TYR B 922 N ALA B 941 SHEET 3 BB 4 LEU B 956 THR B 964 -1 O GLU B 958 N LYS B 927 SHEET 4 BB 4 ALA B 976 ALA B 979 -1 O ALA B 976 N PHE B 959 SHEET 1 BC 3 LYS B 990 LYS B 997 0 SHEET 2 BC 3 LYS B1000 GLN B1009 -1 N LYS B1000 O LYS B 997 SHEET 3 BC 3 THR B1047 ILE B1050 -1 O HIS B1048 N VAL B1006 SHEET 1 BD 4 VAL B1037 VAL B1042 0 SHEET 2 BD 4 ILE B1018 SER B1026 -1 O TYR B1021 N VAL B1041 SHEET 3 BD 4 PRO B1058 ASN B1067 -1 O TYR B1060 N SER B1026 SHEET 4 BD 4 GLY B1070 MET B1074 -1 O GLY B1070 N ASN B1067 SHEET 1 BE 4 VAL B1037 VAL B1042 0 SHEET 2 BE 4 ILE B1018 SER B1026 -1 O TYR B1021 N VAL B1041 SHEET 3 BE 4 PRO B1058 ASN B1067 -1 O TYR B1060 N SER B1026 SHEET 4 BE 4 VAL B1078 ARG B1081 -1 O VAL B1078 N PHE B1061 SHEET 1 BF 2 GLY B1070 MET B1074 0 SHEET 2 BF 2 PRO B1058 ASN B1067 -1 O ALA B1065 N GLY B1072 LINK ND2 ASN A 940 C1 NAG A2088 1555 1555 1.43 LINK ND2 ASN B 940 C1 NAG B2084 1555 1555 1.43 CISPEP 1 ILE A 930 PRO A 931 0 3.87 CRYST1 103.551 103.551 110.776 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009657 0.005576 0.000000 0.00000 SCALE2 0.000000 0.011151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009027 0.00000 MTRIX1 1 -0.395400 0.608500 -0.688000 89.49000 1 MTRIX2 1 0.568600 -0.426100 -0.703600 -64.33000 1 MTRIX3 1 -0.721300 -0.669400 -0.177600 23.73000 1