HEADER BLOOD CLOTTING 30-MAY-13 4BQD TITLE KD1 OF HUMAN TFPI IN COMPLEX WITH A SYNTHETIC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TISSUE FACTOR PATHWAY INHIBITOR (LIPOPROTEIN-ASSOCIATED COMPND 3 COAGULATION INHIBITOR) VARIANT; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: RESIDUES 40-118; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR A.GRIESSNER,H.BRANDSTETTER REVDAT 5 17-JUL-19 4BQD 1 REMARK LINK REVDAT 4 25-MAR-15 4BQD 1 JRNL REVDAT 3 05-FEB-14 4BQD 1 JRNL REVDAT 2 11-DEC-13 4BQD 1 JRNL REVDAT 1 04-DEC-13 4BQD 0 JRNL AUTH M.DOCKAL,R.HARTMAN,M.FRIES,M.CHRISTELLA,L.G.D.THOMASSEN, JRNL AUTH 2 A.HEIZMAN,H.EHRLICH,J.ROSING,F.OSTERKAMP,T.POLAKOWSKI, JRNL AUTH 3 U.REINEKE,A.GRIESSNER,H.BRANDSTETTER,F.SCHEIFLINGER JRNL TITL SMALL PEPTIDES BLOCKING INHIBITION OF FACTOR XA AND TISSUE JRNL TITL 2 FACTOR-FACTOR VIIA BY TISSUE FACTOR PATHWAY INHIBITOR (TFPI) JRNL REF J.BIOL.CHEM. V. 289 1732 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24275667 JRNL DOI 10.1074/JBC.M113.533836 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 10318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : 5.20000 REMARK 3 B33 (A**2) : -4.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.367 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1536 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1446 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2051 ; 1.845 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3326 ; 2.126 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 7.916 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;32.874 ;23.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;18.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.301 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 204 ; 0.523 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1709 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 375 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 15 78 B 15 78 3439 0.09 0.05 REMARK 3 2 C 1 20 D 1 20 959 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6806 -16.2708 9.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.2262 T22: 0.1216 REMARK 3 T33: 0.3969 T12: 0.1323 REMARK 3 T13: 0.0422 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 6.0311 L22: 6.0316 REMARK 3 L33: 4.7404 L12: -2.5206 REMARK 3 L13: 2.3228 L23: -1.8818 REMARK 3 S TENSOR REMARK 3 S11: -0.2079 S12: -0.1771 S13: 0.8764 REMARK 3 S21: 0.0217 S22: 0.0096 S23: -0.0810 REMARK 3 S31: -0.8999 S32: -0.5480 S33: 0.1983 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8306 -41.8889 4.6813 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.1124 REMARK 3 T33: 0.2601 T12: 0.0966 REMARK 3 T13: 0.0243 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 7.0881 L22: 7.6496 REMARK 3 L33: 4.8966 L12: -3.5234 REMARK 3 L13: 1.1493 L23: -0.8403 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: -0.1288 S13: -0.7769 REMARK 3 S21: -0.0641 S22: 0.1257 S23: 0.2331 REMARK 3 S31: 0.8170 S32: 0.4608 S33: -0.1953 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 20 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6987 -25.4721 18.4789 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.3466 REMARK 3 T33: 0.4034 T12: 0.0205 REMARK 3 T13: 0.0423 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.1600 L22: 2.0262 REMARK 3 L33: 8.3060 L12: -0.1140 REMARK 3 L13: 1.0876 L23: -1.8376 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.2095 S13: -0.0183 REMARK 3 S21: 0.1261 S22: 0.2971 S23: 0.3653 REMARK 3 S31: -0.3724 S32: -1.3738 S33: -0.2692 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 20 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8854 -32.0454 12.2564 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.2692 REMARK 3 T33: 0.1788 T12: 0.0666 REMARK 3 T13: -0.0012 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 12.9509 L22: 10.4820 REMARK 3 L33: 0.8376 L12: -8.6428 REMARK 3 L13: -2.9321 L23: 1.0800 REMARK 3 S TENSOR REMARK 3 S11: -0.2456 S12: -0.5212 S13: 0.3030 REMARK 3 S21: 0.4955 S22: 0.3052 S23: -0.2255 REMARK 3 S31: 0.0036 S32: 0.1765 S33: -0.0595 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4BQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290057029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.83500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.83500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION. REMARK 375 HOH C2008 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ASP B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 ASP B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 HIS B 8 REMARK 465 THR B 9 REMARK 465 ILE B 10 REMARK 465 ILE B 11 REMARK 465 THR B 12 REMARK 465 ASP B 13 REMARK 465 THR B 14 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 79 REMARK 475 ASP B 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 78 CA ASP B 79 0.90 REMARK 500 O ARG B 78 N ASP B 79 0.93 REMARK 500 C ARG B 78 CA ASP B 79 1.49 REMARK 500 CA ARG A 78 N ASP A 79 1.56 REMARK 500 CA ARG B 78 N ASP B 79 1.66 REMARK 500 N SER A 2 O THR A 14 1.74 REMARK 500 O GLU A 7 O HOH A 2003 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 78 C ASP B 79 N -0.617 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 78 CA - C - N ANGL. DEV. = -52.8 DEGREES REMARK 500 ARG A 78 O - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 ASP A 79 C - N - CA ANGL. DEV. = -29.7 DEGREES REMARK 500 ARG B 78 CA - C - N ANGL. DEV. = -30.3 DEGREES REMARK 500 ARG B 78 O - C - N ANGL. DEV. = -74.3 DEGREES REMARK 500 ASP B 79 C - N - CA ANGL. DEV. = -44.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 6 -59.07 -133.43 REMARK 500 GLU A 7 -53.60 -138.90 REMARK 500 PRO A 17 130.28 -30.39 REMARK 500 GLU A 60 -142.21 59.93 REMARK 500 ARG A 65 117.08 -160.24 REMARK 500 GLU B 60 -140.28 58.30 REMARK 500 AIB C 17 -65.61 -11.77 REMARK 500 AIB D 17 -66.62 -11.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 12 ASP A 13 -143.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 78 20.47 REMARK 500 ARG B 78 -74.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B2026 DISTANCE = 7.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1080 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1081 DBREF 4BQD A 1 79 UNP Q59EE5 Q59EE5_HUMAN 40 118 DBREF 4BQD B 1 79 UNP Q59EE5 Q59EE5_HUMAN 40 118 DBREF 4BQD C 0 20 PDB 4BQD 4BQD 0 20 DBREF 4BQD D 0 20 PDB 4BQD 4BQD 0 20 SEQRES 1 A 79 ASP SER GLU GLU ASP GLU GLU HIS THR ILE ILE THR ASP SEQRES 2 A 79 THR GLU LEU PRO PRO LEU LYS LEU MET HIS SER PHE CYS SEQRES 3 A 79 ALA PHE LYS ALA ASP ASP GLY PRO CYS LYS ALA ILE MET SEQRES 4 A 79 LYS ARG PHE PHE PHE ASN ILE PHE THR ARG GLN CYS GLU SEQRES 5 A 79 GLU PHE ILE TYR GLY GLY CYS GLU GLY ASN GLN ASN ARG SEQRES 6 A 79 PHE GLU SER LEU GLU GLU CYS LYS LYS MET CYS THR ARG SEQRES 7 A 79 ASP SEQRES 1 B 79 ASP SER GLU GLU ASP GLU GLU HIS THR ILE ILE THR ASP SEQRES 2 B 79 THR GLU LEU PRO PRO LEU LYS LEU MET HIS SER PHE CYS SEQRES 3 B 79 ALA PHE LYS ALA ASP ASP GLY PRO CYS LYS ALA ILE MET SEQRES 4 B 79 LYS ARG PHE PHE PHE ASN ILE PHE THR ARG GLN CYS GLU SEQRES 5 B 79 GLU PHE ILE TYR GLY GLY CYS GLU GLY ASN GLN ASN ARG SEQRES 6 B 79 PHE GLU SER LEU GLU GLU CYS LYS LYS MET CYS THR ARG SEQRES 7 B 79 ASP SEQRES 1 C 21 ACE PHE GLN SER LYS PRO ASN VAL HIS VAL ASP GLY TYR SEQRES 2 C 21 PHE GLU ARG LEU AIB ALA LYS LEU SEQRES 1 D 21 ACE PHE GLN SER LYS PRO ASN VAL HIS VAL ASP GLY TYR SEQRES 2 D 21 PHE GLU ARG LEU AIB ALA LYS LEU MODRES 4BQD AIB C 17 ALA ALPHA-AMINOISOBUTYRIC ACID MODRES 4BQD AIB D 17 ALA ALPHA-AMINOISOBUTYRIC ACID HET ACE C 0 3 HET AIB C 17 6 HET ACE D 0 3 HET AIB D 17 6 HET GOL B1080 6 HET GOL B1081 6 HETNAM ACE ACETYL GROUP HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 AIB 2(C4 H9 N O2) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *72(H2 O) HELIX 1 1 HIS A 23 PHE A 28 5 6 HELIX 2 2 SER A 68 THR A 77 1 10 HELIX 3 3 HIS B 23 PHE B 28 5 6 HELIX 4 4 SER B 68 THR B 77 1 10 HELIX 5 5 GLY C 11 LEU C 20 1 10 HELIX 6 6 GLY D 11 LEU D 20 1 10 SHEET 1 AA 3 THR A 9 ILE A 11 0 SHEET 2 AA 3 GLU A 3 ASP A 5 -1 O GLU A 4 N ILE A 10 SHEET 3 AA 3 LEU A 19 LYS A 20 1 O LEU A 19 N ASP A 5 SHEET 1 AB 2 MET A 39 ASN A 45 0 SHEET 2 AB 2 GLN A 50 TYR A 56 -1 O GLN A 50 N ASN A 45 SHEET 1 BA 2 MET B 39 ASN B 45 0 SHEET 2 BA 2 GLN B 50 TYR B 56 -1 O GLN B 50 N ASN B 45 SSBOND 1 CYS A 26 CYS A 76 1555 1555 2.04 SSBOND 2 CYS A 35 CYS A 59 1555 1555 2.08 SSBOND 3 CYS A 51 CYS A 72 1555 1555 2.07 SSBOND 4 CYS B 26 CYS B 76 1555 1555 2.06 SSBOND 5 CYS B 35 CYS B 59 1555 1555 2.06 SSBOND 6 CYS B 51 CYS B 72 1555 1555 2.06 LINK C LEU C 16 N AIB C 17 1555 1555 1.33 LINK C AIB C 17 N ALA C 18 1555 1555 1.33 LINK C LEU D 16 N AIB D 17 1555 1555 1.33 LINK C AIB D 17 N ALA D 18 1555 1555 1.32 SITE 1 AC1 5 ASP B 31 GLY B 33 PRO B 34 HOH B2025 SITE 2 AC1 5 ARG D 15 SITE 1 AC2 4 MET A 39 AIB C 17 LEU C 20 LEU D 20 CRYST1 113.670 69.320 42.370 90.00 92.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008797 0.000000 0.000456 0.00000 SCALE2 0.000000 0.014426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023633 0.00000