HEADER TRANSFERASE 02-JUN-13 4BQS TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATE KINASE IN TITLE 2 COMPLEX WITH ADP AND A SHIKIMIC ACID DERIVATIVE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SK; COMPND 5 EC: 2.7.1.71; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 ATCC: 27294; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET17B KEYWDS TRANSFERASE, PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR), SHIKIMIC KEYWDS 2 ACID PATHWAY, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.M.OTERO,C.GARCIA-DOVAL,A.L.LLAMAS-SAIZ,B.BLANCO,V.PRADO,E.LENCE, AUTHOR 2 H.LAMB,A.R.HAWKINS,C.GONZALEZ-BELLO,M.J.VAN RAAIJ REVDAT 5 20-DEC-23 4BQS 1 REMARK REVDAT 4 30-JAN-19 4BQS 1 REMARK REVDAT 3 07-FEB-18 4BQS 1 AUTHOR JRNL REVDAT 2 28-AUG-13 4BQS 1 JRNL REVDAT 1 07-AUG-13 4BQS 0 JRNL AUTH B.BLANCO,V.PRADO,E.LENCE,J.M.OTERO,C.GARCIA-DOVAL, JRNL AUTH 2 M.J.VAN RAAIJ,A.L.LLAMAS-SAIZ,H.LAMB,A.R.HAWKINS, JRNL AUTH 3 C.GONZALEZ-BELLO JRNL TITL MYCOBACTERIUM TUBERCULOSIS SHIKIMATE KINASE INHIBITORS: JRNL TITL 2 DESIGN AND SIMULATION STUDIES OF THE CATALYTIC TURNOVER. JRNL REF J. AM. CHEM. SOC. V. 135 12366 2013 JRNL REFN ESSN 1520-5126 JRNL PMID 23889343 JRNL DOI 10.1021/JA405853P REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 21698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.327 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3954 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3945 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5370 ; 1.747 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8988 ; 0.856 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 5.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;30.213 ;20.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;15.562 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;20.378 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4419 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 897 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 986 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3817 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1974 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2592 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 137 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.145 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.347 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 107 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.018 ; 0.200 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3954 ; 2.467 ; 3.025 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3945 ; 0.579 ; 3.084 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5370 ; 3.777 ; 4.483 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2955 ; 5.812 ;29.066 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 456 ; 6.953 ; 9.535 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY RESIDUES 171-176 ARE REMARK 3 DISORDERED REMARK 4 REMARK 4 4BQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290056948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 28.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2G1K REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFUSION, SITTING DROP, 20% REMARK 280 (W/V) PEG 3350, 500 MM LICL AND 100 MM TRIS.HCL PH 7.8, ATP, REMARK 280 SHIKIMIC ACID DERIVATIVE, TEMPERATURE 291 K, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.47950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 THR A 176 REMARK 465 MET B 1 REMARK 465 PRO B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 ALA B 174 REMARK 465 ALA B 175 REMARK 465 THR B 176 REMARK 465 MET C 1 REMARK 465 PRO C 171 REMARK 465 SER C 172 REMARK 465 GLU C 173 REMARK 465 ALA C 174 REMARK 465 ALA C 175 REMARK 465 THR C 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 141 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 124 38.85 73.20 REMARK 500 ASN A 151 -71.00 -57.63 REMARK 500 ARG B 153 114.81 -33.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K2Q A 1172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K2Q B 1172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K2Q C 1172 DBREF 4BQS A 1 176 UNP P0A4Z2 AROK_MYCTU 1 176 DBREF 4BQS B 1 176 UNP P0A4Z2 AROK_MYCTU 1 176 DBREF 4BQS C 1 176 UNP P0A4Z2 AROK_MYCTU 1 176 SEQRES 1 A 176 MET ALA PRO LYS ALA VAL LEU VAL GLY LEU PRO GLY SER SEQRES 2 A 176 GLY LYS SER THR ILE GLY ARG ARG LEU ALA LYS ALA LEU SEQRES 3 A 176 GLY VAL GLY LEU LEU ASP THR ASP VAL ALA ILE GLU GLN SEQRES 4 A 176 ARG THR GLY ARG SER ILE ALA ASP ILE PHE ALA THR ASP SEQRES 5 A 176 GLY GLU GLN GLU PHE ARG ARG ILE GLU GLU ASP VAL VAL SEQRES 6 A 176 ARG ALA ALA LEU ALA ASP HIS ASP GLY VAL LEU SER LEU SEQRES 7 A 176 GLY GLY GLY ALA VAL THR SER PRO GLY VAL ARG ALA ALA SEQRES 8 A 176 LEU ALA GLY HIS THR VAL VAL TYR LEU GLU ILE SER ALA SEQRES 9 A 176 ALA GLU GLY VAL ARG ARG THR GLY GLY ASN THR VAL ARG SEQRES 10 A 176 PRO LEU LEU ALA GLY PRO ASP ARG ALA GLU LYS TYR ARG SEQRES 11 A 176 ALA LEU MET ALA LYS ARG ALA PRO LEU TYR ARG ARG VAL SEQRES 12 A 176 ALA THR MET ARG VAL ASP THR ASN ARG ARG ASN PRO GLY SEQRES 13 A 176 ALA VAL VAL ARG HIS ILE LEU SER ARG LEU GLN VAL PRO SEQRES 14 A 176 SER PRO SER GLU ALA ALA THR SEQRES 1 B 176 MET ALA PRO LYS ALA VAL LEU VAL GLY LEU PRO GLY SER SEQRES 2 B 176 GLY LYS SER THR ILE GLY ARG ARG LEU ALA LYS ALA LEU SEQRES 3 B 176 GLY VAL GLY LEU LEU ASP THR ASP VAL ALA ILE GLU GLN SEQRES 4 B 176 ARG THR GLY ARG SER ILE ALA ASP ILE PHE ALA THR ASP SEQRES 5 B 176 GLY GLU GLN GLU PHE ARG ARG ILE GLU GLU ASP VAL VAL SEQRES 6 B 176 ARG ALA ALA LEU ALA ASP HIS ASP GLY VAL LEU SER LEU SEQRES 7 B 176 GLY GLY GLY ALA VAL THR SER PRO GLY VAL ARG ALA ALA SEQRES 8 B 176 LEU ALA GLY HIS THR VAL VAL TYR LEU GLU ILE SER ALA SEQRES 9 B 176 ALA GLU GLY VAL ARG ARG THR GLY GLY ASN THR VAL ARG SEQRES 10 B 176 PRO LEU LEU ALA GLY PRO ASP ARG ALA GLU LYS TYR ARG SEQRES 11 B 176 ALA LEU MET ALA LYS ARG ALA PRO LEU TYR ARG ARG VAL SEQRES 12 B 176 ALA THR MET ARG VAL ASP THR ASN ARG ARG ASN PRO GLY SEQRES 13 B 176 ALA VAL VAL ARG HIS ILE LEU SER ARG LEU GLN VAL PRO SEQRES 14 B 176 SER PRO SER GLU ALA ALA THR SEQRES 1 C 176 MET ALA PRO LYS ALA VAL LEU VAL GLY LEU PRO GLY SER SEQRES 2 C 176 GLY LYS SER THR ILE GLY ARG ARG LEU ALA LYS ALA LEU SEQRES 3 C 176 GLY VAL GLY LEU LEU ASP THR ASP VAL ALA ILE GLU GLN SEQRES 4 C 176 ARG THR GLY ARG SER ILE ALA ASP ILE PHE ALA THR ASP SEQRES 5 C 176 GLY GLU GLN GLU PHE ARG ARG ILE GLU GLU ASP VAL VAL SEQRES 6 C 176 ARG ALA ALA LEU ALA ASP HIS ASP GLY VAL LEU SER LEU SEQRES 7 C 176 GLY GLY GLY ALA VAL THR SER PRO GLY VAL ARG ALA ALA SEQRES 8 C 176 LEU ALA GLY HIS THR VAL VAL TYR LEU GLU ILE SER ALA SEQRES 9 C 176 ALA GLU GLY VAL ARG ARG THR GLY GLY ASN THR VAL ARG SEQRES 10 C 176 PRO LEU LEU ALA GLY PRO ASP ARG ALA GLU LYS TYR ARG SEQRES 11 C 176 ALA LEU MET ALA LYS ARG ALA PRO LEU TYR ARG ARG VAL SEQRES 12 C 176 ALA THR MET ARG VAL ASP THR ASN ARG ARG ASN PRO GLY SEQRES 13 C 176 ALA VAL VAL ARG HIS ILE LEU SER ARG LEU GLN VAL PRO SEQRES 14 C 176 SER PRO SER GLU ALA ALA THR HET ADP A1171 27 HET K2Q A1172 15 HET ADP B1171 27 HET K2Q B1172 15 HET ADP C1171 27 HET K2Q C1172 15 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM K2Q (1R,6R,10S)-6,10-DIHYDROXY-2-OXABICYCLO[4.3.1]DECA- HETNAM 2 K2Q 4(Z),7-DIENE-8-CARBOXYLIC ACID FORMUL 4 ADP 3(C10 H15 N5 O10 P2) FORMUL 5 K2Q 3(C10 H12 O5) FORMUL 10 HOH *141(H2 O) HELIX 1 1 GLY A 14 LEU A 26 1 13 HELIX 2 2 THR A 33 GLY A 42 1 10 HELIX 3 3 SER A 44 GLY A 53 1 10 HELIX 4 4 GLY A 53 HIS A 72 1 20 HELIX 5 5 GLY A 81 THR A 84 5 4 HELIX 6 6 SER A 85 LEU A 92 1 8 HELIX 7 7 SER A 103 THR A 111 1 9 HELIX 8 8 ASP A 124 ALA A 144 1 21 HELIX 9 9 ASN A 154 VAL A 168 1 15 HELIX 10 10 GLY B 14 LEU B 26 1 13 HELIX 11 11 THR B 33 GLY B 42 1 10 HELIX 12 12 SER B 44 GLY B 53 1 10 HELIX 13 13 GLY B 53 HIS B 72 1 20 HELIX 14 14 GLY B 81 THR B 84 5 4 HELIX 15 15 SER B 85 ALA B 93 1 9 HELIX 16 16 SER B 103 THR B 111 1 9 HELIX 17 17 ASP B 124 ALA B 144 1 21 HELIX 18 18 ASN B 154 VAL B 168 1 15 HELIX 19 19 GLY C 14 GLY C 27 1 14 HELIX 20 20 THR C 33 GLY C 42 1 10 HELIX 21 21 SER C 44 GLY C 53 1 10 HELIX 22 22 GLY C 53 HIS C 72 1 20 HELIX 23 23 GLY C 81 THR C 84 5 4 HELIX 24 24 SER C 85 ALA C 93 1 9 HELIX 25 25 SER C 103 THR C 111 1 9 HELIX 26 26 ASP C 124 ALA C 144 1 21 HELIX 27 27 ASN C 154 VAL C 168 1 15 SHEET 1 AA 5 LEU A 30 ASP A 32 0 SHEET 2 AA 5 VAL A 75 SER A 77 1 O VAL A 75 N LEU A 31 SHEET 3 AA 5 ALA A 5 VAL A 8 1 O ALA A 5 N LEU A 76 SHEET 4 AA 5 VAL A 97 GLU A 101 1 O VAL A 98 N VAL A 8 SHEET 5 AA 5 MET A 146 ASP A 149 1 O MET A 146 N TYR A 99 SHEET 1 BA 5 LEU B 30 ASP B 32 0 SHEET 2 BA 5 VAL B 75 SER B 77 1 O VAL B 75 N LEU B 31 SHEET 3 BA 5 ALA B 5 VAL B 8 1 O ALA B 5 N LEU B 76 SHEET 4 BA 5 VAL B 97 GLU B 101 1 O VAL B 98 N VAL B 8 SHEET 5 BA 5 MET B 146 ASP B 149 1 O MET B 146 N TYR B 99 SHEET 1 CA 5 LEU C 30 ASP C 32 0 SHEET 2 CA 5 VAL C 75 SER C 77 1 O VAL C 75 N LEU C 31 SHEET 3 CA 5 ALA C 5 VAL C 8 1 O ALA C 5 N LEU C 76 SHEET 4 CA 5 VAL C 97 GLU C 101 1 O VAL C 98 N VAL C 8 SHEET 5 CA 5 MET C 146 ASP C 149 1 O MET C 146 N TYR C 99 CISPEP 1 GLY A 122 PRO A 123 0 -8.25 CISPEP 2 GLY B 122 PRO B 123 0 -2.98 CISPEP 3 GLY C 122 PRO C 123 0 -1.94 SITE 1 AC1 12 LEU A 10 PRO A 11 GLY A 12 SER A 13 SITE 2 AC1 12 GLY A 14 LYS A 15 SER A 16 THR A 17 SITE 3 AC1 12 ARG A 110 ARG A 153 PRO A 155 HOH A2007 SITE 1 AC2 13 LEU B 10 PRO B 11 GLY B 12 SER B 13 SITE 2 AC2 13 GLY B 14 LYS B 15 SER B 16 THR B 17 SITE 3 AC2 13 ARG B 110 THR B 150 ARG B 153 PRO B 155 SITE 4 AC2 13 HOH B2007 SITE 1 AC3 12 LEU C 10 PRO C 11 GLY C 12 SER C 13 SITE 2 AC3 12 GLY C 14 LYS C 15 SER C 16 THR C 17 SITE 3 AC3 12 ARG C 110 THR C 150 ARG C 152 HOH C2006 SITE 1 AC4 11 ASP A 34 ARG A 58 GLY A 79 GLY A 80 SITE 2 AC4 11 GLY A 81 LEU A 119 ARG A 136 HOH A2006 SITE 3 AC4 11 HOH A2026 HOH A2039 HOH A2052 SITE 1 AC5 11 ASP B 34 ARG B 58 GLY B 79 GLY B 80 SITE 2 AC5 11 GLY B 81 LEU B 119 ARG B 136 HOH B2006 SITE 3 AC5 11 HOH B2020 HOH B2031 HOH B2041 SITE 1 AC6 11 ASP C 34 PHE C 57 ARG C 58 GLY C 79 SITE 2 AC6 11 GLY C 80 LEU C 119 ARG C 136 HOH C2005 SITE 3 AC6 11 HOH C2022 HOH C2037 HOH C2048 CRYST1 40.653 60.959 89.976 90.00 95.44 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024598 0.000000 0.002343 0.00000 SCALE2 0.000000 0.016404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011164 0.00000 MTRIX1 1 -0.135790 0.762590 -0.632470 50.78946 1 MTRIX2 1 -0.765880 -0.485760 -0.421260 24.22085 1 MTRIX3 1 -0.628480 0.427200 0.650010 -10.92785 1 MTRIX1 2 0.176820 -0.751020 0.636170 -20.30539 1 MTRIX2 2 -0.746850 -0.523360 -0.410250 55.58348 1 MTRIX3 2 0.641050 -0.402580 -0.653440 99.54014 1 MTRIX1 3 0.144780 0.755560 0.638880 -83.81224 1 MTRIX2 3 0.771840 -0.490250 0.404870 -22.23803 1 MTRIX3 3 0.619110 0.434490 -0.654150 103.53188 1