HEADER REPLICATION 19-JUN-13 4BU1 TITLE CRYSTAL STRUCTURE OF RAD4 BRCT1,2 IN COMPLEX WITH A CRB2 TITLE 2 PHOSPHOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-M CHECKPOINT CONTROL PROTEIN RAD4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BRCT1,2 DOMAINS, RESIDUES 1-186; COMPND 5 SYNONYM: P74, PROTEIN CUT5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA REPAIR PROTEIN RHP9; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: PHOSPHOPEPTIDE, RESIDUES 229-241; COMPND 11 SYNONYM: RAD9 HOMOLOG, CRB2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 14 ORGANISM_COMMON: FISSION YEAST; SOURCE 15 ORGANISM_TAXID: 4896 KEYWDS REPLICATION, TOPBP1, DNA DAMAGE CHECKPOINT EXPDTA X-RAY DIFFRACTION AUTHOR M.QU,M.RAPPAS,C.P.WARDLAW,V.GARCIA,A.M.CARR,A.W.OLIVER,L.L.DU, AUTHOR 2 L.H.PEARL REVDAT 2 20-DEC-23 4BU1 1 REMARK LINK REVDAT 1 09-OCT-13 4BU1 0 JRNL AUTH M.QU,M.RAPPAS,C.P.WARDLAW,V.GARCIA,J.Y.REN,M.DAY,A.M.CARR, JRNL AUTH 2 A.W.OLIVER,L.L.DU,L.H.PEARL JRNL TITL PHOSPHORYLATION-DEPENDENT ASSEMBLY AND COORDINATION OF THE JRNL TITL 2 DNA DAMAGE CHECKPOINT APPARATUS BY RAD4(TOPBP1.). JRNL REF MOL.CELL V. 51 723 2013 JRNL REFN ISSN 1097-2765 JRNL PMID 24074952 JRNL DOI 10.1016/J.MOLCEL.2013.08.030 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1388 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2685 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2372 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2554 REMARK 3 BIN R VALUE (WORKING SET) : 0.2338 REMARK 3 BIN FREE R VALUE : 0.3021 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.61060 REMARK 3 B22 (A**2) : -12.23530 REMARK 3 B33 (A**2) : 7.62470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.319 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.289 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.227 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.262 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.219 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3326 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4484 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1534 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 466 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3326 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 424 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4103 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.19 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|4 - 88} REMARK 3 ORIGIN FOR THE GROUP (A): 1.3324 -25.4637 1.4235 REMARK 3 T TENSOR REMARK 3 T11: -0.0737 T22: 0.0336 REMARK 3 T33: -0.0897 T12: -0.0192 REMARK 3 T13: -0.0085 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.0268 L22: 1.1599 REMARK 3 L33: 1.8155 L12: -0.1844 REMARK 3 L13: -1.2393 L23: -0.3803 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: 0.0692 S13: -0.1326 REMARK 3 S21: -0.0039 S22: -0.0532 S23: -0.0573 REMARK 3 S31: 0.2369 S32: -0.2479 S33: 0.1119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|92 - 149} REMARK 3 ORIGIN FOR THE GROUP (A): -16.2567 -20.2778 19.0499 REMARK 3 T TENSOR REMARK 3 T11: -0.0639 T22: 0.0079 REMARK 3 T33: -0.0823 T12: 0.0196 REMARK 3 T13: -0.0011 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.4263 L22: 2.0760 REMARK 3 L33: 3.6687 L12: 0.0402 REMARK 3 L13: -1.0264 L23: 1.6587 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.0761 S13: 0.0364 REMARK 3 S21: 0.0465 S22: 0.0364 S23: 0.0583 REMARK 3 S31: 0.1499 S32: 0.0211 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|150 - 185} REMARK 3 ORIGIN FOR THE GROUP (A): -16.9008 -10.6264 16.2229 REMARK 3 T TENSOR REMARK 3 T11: -0.0398 T22: 0.0274 REMARK 3 T33: -0.0528 T12: 0.0173 REMARK 3 T13: -0.0094 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.4796 L22: 0.7729 REMARK 3 L33: 2.9634 L12: -0.0908 REMARK 3 L13: 0.7405 L23: -0.6549 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.1170 S13: 0.1071 REMARK 3 S21: 0.0649 S22: 0.1029 S23: -0.0442 REMARK 3 S31: -0.2942 S32: 0.0143 S33: -0.0729 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|4 - 87} REMARK 3 ORIGIN FOR THE GROUP (A): -6.2906 -25.6652 44.4426 REMARK 3 T TENSOR REMARK 3 T11: -0.0684 T22: 0.0117 REMARK 3 T33: -0.0812 T12: 0.0053 REMARK 3 T13: 0.0003 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.7282 L22: 0.8952 REMARK 3 L33: 1.7998 L12: -0.1336 REMARK 3 L13: -1.0227 L23: -0.2115 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: -0.0762 S13: -0.1115 REMARK 3 S21: 0.0063 S22: -0.0684 S23: 0.0617 REMARK 3 S31: 0.1463 S32: 0.0283 S33: 0.1182 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {B|88 - 117} REMARK 3 ORIGIN FOR THE GROUP (A): 9.2725 -25.0479 31.9223 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: 0.0697 REMARK 3 T33: -0.0445 T12: -0.0085 REMARK 3 T13: 0.0152 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.5465 L22: 2.8019 REMARK 3 L33: 0.5938 L12: 0.3902 REMARK 3 L13: 0.0207 L23: -1.6578 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0806 S13: -0.0845 REMARK 3 S21: 0.0290 S22: 0.0041 S23: -0.0671 REMARK 3 S31: 0.0694 S32: 0.0020 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|118 - 185} REMARK 3 ORIGIN FOR THE GROUP (A): 12.4097 -13.7824 27.4386 REMARK 3 T TENSOR REMARK 3 T11: -0.0886 T22: -0.0085 REMARK 3 T33: -0.0605 T12: -0.0079 REMARK 3 T13: -0.0031 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.3386 L22: 0.6191 REMARK 3 L33: 5.6732 L12: 0.5465 REMARK 3 L13: 0.0832 L23: -0.6229 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0363 S13: 0.0619 REMARK 3 S21: 0.0002 S22: 0.0344 S23: 0.0073 REMARK 3 S31: -0.0912 S32: 0.0455 S33: -0.0116 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54190 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR 2.0 REMARK 200 DATA SCALING SOFTWARE : DTSCALEAVERAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 59.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.610 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.39 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BMC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAK PHOSPHATE, 200 MM NACL, 40% REMARK 280 W/V PEG 200 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.71950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.06800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.42200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.06800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.71950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.42200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ASP A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 ASP A 186 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ASP B 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 96 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2145 O HOH B 2048 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 93 18.40 58.88 REMARK 500 LEU A 102 41.36 -109.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2016 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1190 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1191 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1192 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1193 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1194 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1242 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1190 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1195 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BU0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAD4 BRCT1,2 IN COMPLEX WITH A CRB2 REMARK 900 PHOSPHOPEPTIDE DBREF 4BU1 A 1 186 UNP P32372 RAD4_SCHPO 1 186 DBREF 4BU1 B 1 186 UNP P32372 RAD4_SCHPO 1 186 DBREF 4BU1 C 229 241 UNP P87074 RHP9_SCHPO 229 241 DBREF 4BU1 D 229 241 UNP P87074 RHP9_SCHPO 229 241 SEQADV 4BU1 LEU A 98 UNP P32372 PHE 98 VARIANT SEQADV 4BU1 LEU B 98 UNP P32372 PHE 98 VARIANT SEQADV 4BU1 GLY C 228 UNP P87074 EXPRESSION TAG SEQADV 4BU1 GLY D 228 UNP P87074 EXPRESSION TAG SEQRES 1 A 186 MET GLY SER SER LYS PRO LEU LYS GLY PHE VAL ILE CYS SEQRES 2 A 186 CYS THR SER ILE ASP LEU LYS GLN ARG THR GLU ILE SER SEQRES 3 A 186 THR LYS ALA THR LYS LEU GLY ALA ALA TYR ARG SER ASP SEQRES 4 A 186 PHE THR LYS ASP VAL THR HIS LEU ILE ALA GLY ASP PHE SEQRES 5 A 186 ASP THR PRO LYS TYR LYS PHE ALA ALA LYS SER ARG PRO SEQRES 6 A 186 ASP ILE LYS ILE MET SER SER GLU TRP ILE PRO VAL LEU SEQRES 7 A 186 TYR GLU SER TRP VAL GLN GLY GLU ASP LEU ASP ASP GLY SEQRES 8 A 186 LEU LEU VAL ASP LYS HIS LEU LEU PRO THR LEU PHE LYS SEQRES 9 A 186 CYS ARG VAL CYS LEU THR ASN ILE GLY GLN PRO GLU ARG SEQRES 10 A 186 SER ARG ILE GLU ASN TYR VAL LEU LYS HIS GLY GLY THR SEQRES 11 A 186 PHE CYS PRO ASP LEU THR ARG ASP VAL THR HIS LEU ILE SEQRES 12 A 186 ALA GLY THR SER SER GLY ARG LYS TYR GLU TYR ALA LEU SEQRES 13 A 186 LYS TRP LYS ILE ASN VAL VAL CYS VAL GLU TRP LEU TRP SEQRES 14 A 186 GLN SER ILE GLN ARG ASN ALA VAL LEU GLU PRO GLN TYR SEQRES 15 A 186 PHE GLN LEU ASP SEQRES 1 B 186 MET GLY SER SER LYS PRO LEU LYS GLY PHE VAL ILE CYS SEQRES 2 B 186 CYS THR SER ILE ASP LEU LYS GLN ARG THR GLU ILE SER SEQRES 3 B 186 THR LYS ALA THR LYS LEU GLY ALA ALA TYR ARG SER ASP SEQRES 4 B 186 PHE THR LYS ASP VAL THR HIS LEU ILE ALA GLY ASP PHE SEQRES 5 B 186 ASP THR PRO LYS TYR LYS PHE ALA ALA LYS SER ARG PRO SEQRES 6 B 186 ASP ILE LYS ILE MET SER SER GLU TRP ILE PRO VAL LEU SEQRES 7 B 186 TYR GLU SER TRP VAL GLN GLY GLU ASP LEU ASP ASP GLY SEQRES 8 B 186 LEU LEU VAL ASP LYS HIS LEU LEU PRO THR LEU PHE LYS SEQRES 9 B 186 CYS ARG VAL CYS LEU THR ASN ILE GLY GLN PRO GLU ARG SEQRES 10 B 186 SER ARG ILE GLU ASN TYR VAL LEU LYS HIS GLY GLY THR SEQRES 11 B 186 PHE CYS PRO ASP LEU THR ARG ASP VAL THR HIS LEU ILE SEQRES 12 B 186 ALA GLY THR SER SER GLY ARG LYS TYR GLU TYR ALA LEU SEQRES 13 B 186 LYS TRP LYS ILE ASN VAL VAL CYS VAL GLU TRP LEU TRP SEQRES 14 B 186 GLN SER ILE GLN ARG ASN ALA VAL LEU GLU PRO GLN TYR SEQRES 15 B 186 PHE GLN LEU ASP SEQRES 1 C 14 GLY TYR GLY ARG VAL GLU SER TPO PRO PRO ALA PHE LEU SEQRES 2 C 14 PRO SEQRES 1 D 14 GLY TYR GLY ARG VAL GLU SER TPO PRO PRO ALA PHE LEU SEQRES 2 D 14 PRO MODRES 4BU1 TPO C 235 THR PHOSPHOTHREONINE MODRES 4BU1 TPO D 235 THR PHOSPHOTHREONINE HET TPO C 235 11 HET TPO D 235 11 HET PO4 A1186 5 HET GOL A1187 6 HET 1PE A1188 16 HET EDO A1189 4 HET EDO A1190 4 HET PO4 B1186 5 HET GOL B1187 6 HET 1PE B1188 16 HET EDO B1189 4 HET EDO B1190 4 HET EDO B1191 4 HET EDO B1192 4 HET EDO B1193 4 HET EDO B1194 4 HET EDO B1195 4 HET EDO B1196 4 HET EDO C1242 4 HETNAM TPO PHOSPHOTHREONINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 1PE 2(C10 H22 O6) FORMUL 8 EDO 11(C2 H6 O2) FORMUL 22 HOH *353(H2 O) HELIX 1 1 ASP A 18 LEU A 32 1 15 HELIX 2 2 THR A 54 ARG A 64 1 11 HELIX 3 3 GLU A 73 GLN A 84 1 12 HELIX 4 4 VAL A 94 HIS A 97 5 4 HELIX 5 5 PRO A 115 HIS A 127 1 13 HELIX 6 6 GLY A 149 TRP A 158 1 10 HELIX 7 7 VAL A 165 ASN A 175 1 11 HELIX 8 8 GLU A 179 GLN A 184 5 6 HELIX 9 9 ASP B 18 LEU B 32 1 15 HELIX 10 10 THR B 54 ARG B 64 1 11 HELIX 11 11 GLU B 73 GLN B 84 1 12 HELIX 12 12 VAL B 94 HIS B 97 5 4 HELIX 13 13 PRO B 115 HIS B 127 1 13 HELIX 14 14 GLY B 149 TRP B 158 1 10 HELIX 15 15 VAL B 165 ASN B 175 1 11 HELIX 16 16 GLU B 179 PHE B 183 5 5 HELIX 17 17 PRO C 236 LEU C 240 5 5 HELIX 18 18 PRO D 236 LEU D 240 5 5 SHEET 1 AA 4 ALA A 35 ARG A 37 0 SHEET 2 AA 4 VAL A 11 THR A 15 1 O ILE A 12 N ARG A 37 SHEET 3 AA 4 HIS A 46 ALA A 49 1 O HIS A 46 N CYS A 13 SHEET 4 AA 4 LYS A 68 MET A 70 1 O LYS A 68 N LEU A 47 SHEET 1 AB 4 THR A 130 PHE A 131 0 SHEET 2 AB 4 ARG A 106 THR A 110 1 N VAL A 107 O THR A 130 SHEET 3 AB 4 HIS A 141 ALA A 144 1 O HIS A 141 N CYS A 108 SHEET 4 AB 4 ASN A 161 VAL A 163 1 O ASN A 161 N LEU A 142 SHEET 1 AC 2 LEU A 135 THR A 136 0 SHEET 2 AC 2 ARG C 231 VAL C 232 -1 O VAL C 232 N LEU A 135 SHEET 1 BA 4 ALA B 35 ARG B 37 0 SHEET 2 BA 4 VAL B 11 THR B 15 1 O ILE B 12 N ARG B 37 SHEET 3 BA 4 HIS B 46 ALA B 49 1 O HIS B 46 N CYS B 13 SHEET 4 BA 4 LYS B 68 MET B 70 1 O LYS B 68 N LEU B 47 SHEET 1 BB 4 THR B 130 PHE B 131 0 SHEET 2 BB 4 ARG B 106 THR B 110 1 N VAL B 107 O THR B 130 SHEET 3 BB 4 HIS B 141 ALA B 144 1 O HIS B 141 N CYS B 108 SHEET 4 BB 4 ASN B 161 VAL B 163 1 O ASN B 161 N LEU B 142 SHEET 1 BC 2 LEU B 135 THR B 136 0 SHEET 2 BC 2 ARG D 231 VAL D 232 -1 O VAL D 232 N LEU B 135 LINK C SER C 234 N TPO C 235 1555 1555 1.34 LINK C TPO C 235 N PRO C 236 1555 1555 1.36 LINK C SER D 234 N TPO D 235 1555 1555 1.35 LINK C TPO D 235 N PRO D 236 1555 1555 1.35 CISPEP 1 GLN A 114 PRO A 115 0 5.78 CISPEP 2 GLN B 114 PRO B 115 0 5.18 SITE 1 AC1 10 CYS A 14 THR A 15 SER A 16 ARG A 22 SITE 2 AC1 10 LYS A 56 HOH A2016 HOH A2019 HOH A2034 SITE 3 AC1 10 GLY D 228 TYR D 229 SITE 1 AC2 11 CYS B 14 THR B 15 SER B 16 ARG B 22 SITE 2 AC2 11 LYS B 56 EDO B1192 HOH B2007 HOH B2153 SITE 3 AC2 11 HOH B2154 GLY C 228 TYR C 229 SITE 1 AC3 6 SER B 71 SER B 72 LEU B 99 PRO B 100 SITE 2 AC3 6 PHE B 103 HOH B2044 SITE 1 AC4 4 SER A 71 LEU A 99 PHE A 103 HOH A2066 SITE 1 AC5 9 GLU B 86 ARG B 137 ARG B 150 TYR B 154 SITE 2 AC5 9 LYS B 157 TRP B 158 GLY D 228 TYR D 229 SITE 3 AC5 9 GLY D 230 SITE 1 AC6 8 GLN A 84 ARG A 137 ARG A 150 HOH A2148 SITE 2 AC6 8 GLY C 228 TYR C 229 GLY C 230 ARG C 231 SITE 1 AC7 3 SER B 26 THR B 30 HOH B2159 SITE 1 AC8 4 THR B 140 ILE B 160 ASN B 161 HOH B2137 SITE 1 AC9 4 THR A 140 ILE A 160 ASN A 161 HOH A2163 SITE 1 BC1 4 ARG B 37 ARG B 119 TRP B 169 HOH B2110 SITE 1 BC2 4 LEU B 19 ARG B 22 SER B 26 HOH B2157 SITE 1 BC3 8 GLN A 84 GLY A 85 PRO B 55 PO4 B1186 SITE 2 BC3 8 EDO B1195 HOH B2007 HOH B2035 HOH B2153 SITE 1 BC4 2 TRP B 82 HOH B2077 SITE 1 BC5 4 GLU B 153 TYR B 154 LYS B 157 HOH B2158 SITE 1 BC6 3 GLU C 233 SER C 234 PRO C 236 SITE 1 BC7 6 ASN A 111 ILE A 112 GLY A 113 GLU A 116 SITE 2 BC7 6 HOH A2124 HOH A2178 SITE 1 BC8 3 GLY A 85 ASP A 87 EDO B1192 CRYST1 65.439 76.844 92.136 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010854 0.00000