HEADER GENE REGULATION 04-JUL-13 4BWX TITLE STRUCTURE OF NEUROSPORA CRASSA PAN3 PSEUDOKINASE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PSEUDOKINASE DOMAIN, COILED COIL, CTERMINAL KNOB DOMAIN, COMPND 5 RESIDUES 234-656; COMPND 6 SYNONYM: PAB1P-DEPENDENT POLY(A)-NUCLEASE, PAB-DEPENDENT POLYA- COMPND 7 SPECIFIC RIBONUCLEASE SUBUNIT PAN-3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNEA-NPM KEYWDS GENE REGULATION, DEADENYLASE, PAN2, MIRNA, MRNA DECAY EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRISTIE,A.BOLAND,E.HUNTZINGER,O.WEICHENRIEDER,E.IZAURRALDE REVDAT 2 20-DEC-23 4BWX 1 REMARK LINK REVDAT 1 21-AUG-13 4BWX 0 JRNL AUTH M.CHRISTIE,A.BOLAND,E.HUNTZINGER,O.WEICHENRIEDER, JRNL AUTH 2 E.IZAURRALDE JRNL TITL STRUCTURE OF THE PAN3 PSEUDOKINASE REVEALS THE BASIS FOR JRNL TITL 2 INTERACTIONS WITH THE PAN2 DEADENYLASE AND THE GW182 JRNL TITL 3 PROTEINS JRNL REF MOL.CELL V. 51 360 2013 JRNL REFN ISSN 1097-2765 JRNL PMID 23932717 JRNL DOI 10.1016/J.MOLCEL.2013.07.011 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1616 - 5.9244 1.00 2639 134 0.1961 0.2006 REMARK 3 2 5.9244 - 4.7039 1.00 2614 145 0.1972 0.2300 REMARK 3 3 4.7039 - 4.1098 1.00 2580 154 0.1884 0.2154 REMARK 3 4 4.1098 - 3.7342 1.00 2615 133 0.1968 0.2366 REMARK 3 5 3.7342 - 3.4667 1.00 2607 138 0.2090 0.2331 REMARK 3 6 3.4667 - 3.2623 1.00 2632 119 0.2349 0.3388 REMARK 3 7 3.2623 - 3.0990 1.00 2590 134 0.2626 0.3097 REMARK 3 8 3.0990 - 2.9641 0.99 2589 153 0.2857 0.3593 REMARK 3 9 2.9641 - 2.8500 0.99 2584 147 0.2933 0.3104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6674 REMARK 3 ANGLE : 1.401 9041 REMARK 3 CHIRALITY : 0.145 1002 REMARK 3 PLANARITY : 0.003 1152 REMARK 3 DIHEDRAL : 11.209 2464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -24.8441 30.8302 6.4487 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.3807 REMARK 3 T33: 0.3870 T12: -0.0179 REMARK 3 T13: 0.0527 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.6837 L22: 1.0802 REMARK 3 L33: 1.0465 L12: 0.4565 REMARK 3 L13: -0.4109 L23: 0.4464 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: -0.1180 S13: -0.0474 REMARK 3 S21: 0.0006 S22: -0.1336 S23: 0.0985 REMARK 3 S31: 0.2222 S32: 0.3715 S33: -0.0295 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -40.1883 28.9279 24.2848 REMARK 3 T TENSOR REMARK 3 T11: 0.5838 T22: 0.3418 REMARK 3 T33: 0.4118 T12: -0.0225 REMARK 3 T13: 0.0577 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.2130 L22: 1.4744 REMARK 3 L33: 0.1850 L12: 0.1100 REMARK 3 L13: -0.2804 L23: -0.1101 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: -0.1048 S13: -0.0778 REMARK 3 S21: 0.1824 S22: -0.0902 S23: -0.0045 REMARK 3 S31: 0.0180 S32: 0.1257 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99998 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BWK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, 15% PEG MONOMETHYL REMARK 280 ETHER 5000 MME, 0.1 M POTASSIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 153.73933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.86967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 115.30450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.43483 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 192.17417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 228 REMARK 465 PRO A 229 REMARK 465 HIS A 230 REMARK 465 MET A 231 REMARK 465 LEU A 232 REMARK 465 GLU A 233 REMARK 465 ASN A 368 REMARK 465 ASN A 369 REMARK 465 SER A 370 REMARK 465 HIS A 371 REMARK 465 ASN A 372 REMARK 465 ARG A 373 REMARK 465 LEU A 374 REMARK 465 ARG A 375 REMARK 465 ASN A 376 REMARK 465 THR A 377 REMARK 465 GLY A 558 REMARK 465 ASP A 559 REMARK 465 SER A 560 REMARK 465 CYS A 561 REMARK 465 GLY A 562 REMARK 465 VAL A 563 REMARK 465 HIS A 564 REMARK 465 ASN A 565 REMARK 465 SER A 647 REMARK 465 LYS A 648 REMARK 465 PRO A 649 REMARK 465 SER A 650 REMARK 465 ALA A 651 REMARK 465 THR A 652 REMARK 465 GLY A 653 REMARK 465 ALA A 654 REMARK 465 THR A 655 REMARK 465 ILE A 656 REMARK 465 GLY B 228 REMARK 465 PRO B 229 REMARK 465 HIS B 230 REMARK 465 MET B 231 REMARK 465 LEU B 232 REMARK 465 GLU B 233 REMARK 465 ASN B 372 REMARK 465 ARG B 373 REMARK 465 LEU B 374 REMARK 465 ARG B 375 REMARK 465 ASN B 376 REMARK 465 THR B 377 REMARK 465 GLY B 558 REMARK 465 ASP B 559 REMARK 465 SER B 560 REMARK 465 CYS B 561 REMARK 465 GLY B 562 REMARK 465 VAL B 563 REMARK 465 HIS B 564 REMARK 465 ASN B 565 REMARK 465 TRP B 566 REMARK 465 SER B 567 REMARK 465 SER B 647 REMARK 465 LYS B 648 REMARK 465 PRO B 649 REMARK 465 SER B 650 REMARK 465 ALA B 651 REMARK 465 THR B 652 REMARK 465 GLY B 653 REMARK 465 ALA B 654 REMARK 465 THR B 655 REMARK 465 ILE B 656 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 234 CG1 CG2 CD1 REMARK 470 ILE B 234 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 277 OG1 THR B 279 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 309 124.71 -173.23 REMARK 500 ARG A 407 -60.85 68.71 REMARK 500 SER A 427 -3.87 71.20 REMARK 500 PRO A 497 80.09 -67.97 REMARK 500 ARG A 593 79.11 -106.03 REMARK 500 ASN A 621 65.23 -66.46 REMARK 500 ASN B 311 116.87 -165.16 REMARK 500 ARG B 407 -61.18 68.02 REMARK 500 SER B 427 -4.24 70.44 REMARK 500 ASN B 438 56.13 -95.77 REMARK 500 PRO B 497 78.94 -66.28 REMARK 500 ARG B 593 74.60 -109.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1648 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD1 REMARK 620 2 AGS A1647 O3G 161.9 REMARK 620 3 AGS A1647 O2B 71.4 95.4 REMARK 620 4 AGS A1647 O2A 87.9 98.6 67.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1648 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 271 OD2 REMARK 620 2 AGS B1647 O2A 103.3 REMARK 620 3 AGS B1647 O2G 103.7 109.9 REMARK 620 N 1 2 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1648 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 1647 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS B 1647 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1648 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BWK RELATED DB: PDB REMARK 900 STRUCTURE OF NEUROSPORA CRASSA PAN3 PSEUDOKINASE REMARK 900 RELATED ID: 4BWP RELATED DB: PDB REMARK 900 STRUCTURE OF DROSOPHILA MELANOGASTER PAN3 PSEUDOKINASE DBREF 4BWX A 234 656 UNP Q7SDP4 PAN3_NEUCR 234 656 DBREF 4BWX B 234 656 UNP Q7SDP4 PAN3_NEUCR 234 656 SEQADV 4BWX GLY A 228 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX PRO A 229 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX HIS A 230 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX MET A 231 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX LEU A 232 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX GLU A 233 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX MET A 510 UNP Q7SDP4 LEU 510 ENGINEERED MUTATION SEQADV 4BWX PRO A 511 UNP Q7SDP4 GLY 511 ENGINEERED MUTATION SEQADV 4BWX MET A 512 UNP Q7SDP4 GLY 512 ENGINEERED MUTATION SEQADV 4BWX GLY A 514 UNP Q7SDP4 THR 514 ENGINEERED MUTATION SEQADV 4BWX ALA A 515 UNP Q7SDP4 THR 515 ENGINEERED MUTATION SEQADV 4BWX ARG A 516 UNP Q7SDP4 HIS 516 ENGINEERED MUTATION SEQADV 4BWX PHE A 517 UNP Q7SDP4 LEU 517 ENGINEERED MUTATION SEQADV 4BWX GLY B 228 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX PRO B 229 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX HIS B 230 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX MET B 231 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX LEU B 232 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX GLU B 233 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWX MET B 510 UNP Q7SDP4 LEU 510 ENGINEERED MUTATION SEQADV 4BWX PRO B 511 UNP Q7SDP4 GLY 511 ENGINEERED MUTATION SEQADV 4BWX MET B 512 UNP Q7SDP4 GLY 512 ENGINEERED MUTATION SEQADV 4BWX GLY B 514 UNP Q7SDP4 THR 514 ENGINEERED MUTATION SEQADV 4BWX ALA B 515 UNP Q7SDP4 THR 515 ENGINEERED MUTATION SEQADV 4BWX ARG B 516 UNP Q7SDP4 HIS 516 ENGINEERED MUTATION SEQADV 4BWX PHE B 517 UNP Q7SDP4 LEU 517 ENGINEERED MUTATION SEQRES 1 A 429 GLY PRO HIS MET LEU GLU ILE PRO LYS ASP ARG ARG GLU SEQRES 2 A 429 ASN LEU GLN LYS LYS LEU PHE HIS MET GLN GLN LEU LEU SEQRES 3 A 429 PRO ASN SER GLY LEU PRO ASN LEU ASP ARG TRP HIS SER SEQRES 4 A 429 LEU PHE PRO LEU ASP THR LYS ALA THR ARG ASN SER THR SEQRES 5 A 429 CYS PHE GLY TYR PRO SER TRP MET TYR LYS ALA GLN ASN SEQRES 6 A 429 ASN LYS ASN GLY ARG HIS PHE ALA LEU ARG ARG ILE GLU SEQRES 7 A 429 GLY TYR ARG LEU THR ASN GLU LYS ALA ILE LEU ASN VAL SEQRES 8 A 429 THR LYS GLU TRP LYS LYS ILE ILE ASN ALA ASN ILE VAL SEQRES 9 A 429 THR VAL HIS GLU ALA PHE THR THR GLU PHE PHE GLY ASP SEQRES 10 A 429 SER SER LEU ILE PHE VAL TYR ASP PHE HIS PRO LEU SER SEQRES 11 A 429 GLU THR LEU TYR ASP HIS HIS PHE PRO PRO ASN ASN SER SEQRES 12 A 429 HIS ASN ARG LEU ARG ASN THR ASN LYS ILE PRO GLU ASN SEQRES 13 A 429 LEU LEU TRP SER TYR VAL CYS GLN ILE ALA ASN ALA LEU SEQRES 14 A 429 LEU ALA ILE HIS ASN ALA LYS LEU ALA ALA ARG CYS LEU SEQRES 15 A 429 GLU LEU SER LYS ILE ILE TRP GLU ASN ASN ARG ILE ARG SEQRES 16 A 429 LEU ALA ALA CYS SER ILE LEU ASP VAL LEU HIS HIS ASP SEQRES 17 A 429 SER PRO ASN ARG LYS THR ILE GLU GLU LEU GLN GLN GLU SEQRES 18 A 429 ASP PHE VAL LYS PHE GLY ARG ILE ILE LEU ALA LEU ALA SEQRES 19 A 429 THR ASN THR PRO THR LEU ASN PHE ASN ASN ILE ASP ALA SEQRES 20 A 429 ALA LEU ALA THR ILE VAL PRO ARG TYR SER THR GLN LEU SEQRES 21 A 429 ARG GLY VAL LEU GLU TRP LEU ILE LYS PRO SER ALA PRO SEQRES 22 A 429 GLY GLU THR LYS THR VAL GLU THR LEU MET PRO MET ILE SEQRES 23 A 429 GLY ALA ARG PHE ALA ASN PHE ALA ASN PHE VAL MET GLN SEQRES 24 A 429 GLU SER ASP GLU LYS GLU PHE HIS LEU MET ARG GLU LEU SEQRES 25 A 429 GLU ASN GLY ARG ILE ALA ARG LEU MET PHE LYS LEU SER SEQRES 26 A 429 VAL VAL ASN GLU ARG GLY ASP SER CYS GLY VAL HIS ASN SEQRES 27 A 429 TRP SER GLU THR GLY GLU ARG LEU LEU LEU LYS LEU PHE SEQRES 28 A 429 ARG ASP TYR VAL PHE HIS GLN VAL ASP ALA ASP GLY LYS SEQRES 29 A 429 ALA ARG LEU ASP THR ASN HIS TYR LEU ASN CYS LEU SER SEQRES 30 A 429 LYS LEU ASP ALA SER SER GLU GLU GLN ILE LEU LEU THR SEQRES 31 A 429 SER ARG ASP ASN ALA THR VAL PHE VAL VAL SER TYR ARG SEQRES 32 A 429 SER ILE ARG GLN MET LEU ASP ARG ALA TYR GLY GLU LEU SEQRES 33 A 429 GLY LYS GLU SER LYS PRO SER ALA THR GLY ALA THR ILE SEQRES 1 B 429 GLY PRO HIS MET LEU GLU ILE PRO LYS ASP ARG ARG GLU SEQRES 2 B 429 ASN LEU GLN LYS LYS LEU PHE HIS MET GLN GLN LEU LEU SEQRES 3 B 429 PRO ASN SER GLY LEU PRO ASN LEU ASP ARG TRP HIS SER SEQRES 4 B 429 LEU PHE PRO LEU ASP THR LYS ALA THR ARG ASN SER THR SEQRES 5 B 429 CYS PHE GLY TYR PRO SER TRP MET TYR LYS ALA GLN ASN SEQRES 6 B 429 ASN LYS ASN GLY ARG HIS PHE ALA LEU ARG ARG ILE GLU SEQRES 7 B 429 GLY TYR ARG LEU THR ASN GLU LYS ALA ILE LEU ASN VAL SEQRES 8 B 429 THR LYS GLU TRP LYS LYS ILE ILE ASN ALA ASN ILE VAL SEQRES 9 B 429 THR VAL HIS GLU ALA PHE THR THR GLU PHE PHE GLY ASP SEQRES 10 B 429 SER SER LEU ILE PHE VAL TYR ASP PHE HIS PRO LEU SER SEQRES 11 B 429 GLU THR LEU TYR ASP HIS HIS PHE PRO PRO ASN ASN SER SEQRES 12 B 429 HIS ASN ARG LEU ARG ASN THR ASN LYS ILE PRO GLU ASN SEQRES 13 B 429 LEU LEU TRP SER TYR VAL CYS GLN ILE ALA ASN ALA LEU SEQRES 14 B 429 LEU ALA ILE HIS ASN ALA LYS LEU ALA ALA ARG CYS LEU SEQRES 15 B 429 GLU LEU SER LYS ILE ILE TRP GLU ASN ASN ARG ILE ARG SEQRES 16 B 429 LEU ALA ALA CYS SER ILE LEU ASP VAL LEU HIS HIS ASP SEQRES 17 B 429 SER PRO ASN ARG LYS THR ILE GLU GLU LEU GLN GLN GLU SEQRES 18 B 429 ASP PHE VAL LYS PHE GLY ARG ILE ILE LEU ALA LEU ALA SEQRES 19 B 429 THR ASN THR PRO THR LEU ASN PHE ASN ASN ILE ASP ALA SEQRES 20 B 429 ALA LEU ALA THR ILE VAL PRO ARG TYR SER THR GLN LEU SEQRES 21 B 429 ARG GLY VAL LEU GLU TRP LEU ILE LYS PRO SER ALA PRO SEQRES 22 B 429 GLY GLU THR LYS THR VAL GLU THR LEU MET PRO MET ILE SEQRES 23 B 429 GLY ALA ARG PHE ALA ASN PHE ALA ASN PHE VAL MET GLN SEQRES 24 B 429 GLU SER ASP GLU LYS GLU PHE HIS LEU MET ARG GLU LEU SEQRES 25 B 429 GLU ASN GLY ARG ILE ALA ARG LEU MET PHE LYS LEU SER SEQRES 26 B 429 VAL VAL ASN GLU ARG GLY ASP SER CYS GLY VAL HIS ASN SEQRES 27 B 429 TRP SER GLU THR GLY GLU ARG LEU LEU LEU LYS LEU PHE SEQRES 28 B 429 ARG ASP TYR VAL PHE HIS GLN VAL ASP ALA ASP GLY LYS SEQRES 29 B 429 ALA ARG LEU ASP THR ASN HIS TYR LEU ASN CYS LEU SER SEQRES 30 B 429 LYS LEU ASP ALA SER SER GLU GLU GLN ILE LEU LEU THR SEQRES 31 B 429 SER ARG ASP ASN ALA THR VAL PHE VAL VAL SER TYR ARG SEQRES 32 B 429 SER ILE ARG GLN MET LEU ASP ARG ALA TYR GLY GLU LEU SEQRES 33 B 429 GLY LYS GLU SER LYS PRO SER ALA THR GLY ALA THR ILE HET AGS A1647 31 HET MG A1648 1 HET AGS B1647 31 HET MG B1648 1 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 AGS 2(C10 H16 N5 O12 P3 S) FORMUL 4 MG 2(MG 2+) HELIX 1 1 LYS A 236 GLN A 250 1 15 HELIX 2 2 THR A 319 TRP A 322 1 4 HELIX 3 3 LEU A 360 HIS A 364 1 5 HELIX 4 4 GLU A 382 HIS A 400 1 19 HELIX 5 5 LEU A 429 LEU A 432 1 4 HELIX 6 6 ILE A 442 ALA A 461 1 20 HELIX 7 7 THR A 485 ILE A 495 1 11 HELIX 8 8 VAL A 506 ILE A 513 1 8 HELIX 9 9 ALA A 515 VAL A 554 1 40 HELIX 10 10 ARG A 572 PHE A 583 1 12 HELIX 11 11 THR A 596 ASP A 607 1 12 HELIX 12 12 TYR A 629 GLY A 644 1 16 HELIX 13 13 LYS B 236 GLN B 250 1 15 HELIX 14 14 LYS B 313 TRP B 322 1 10 HELIX 15 15 LEU B 360 HIS B 364 1 5 HELIX 16 16 GLU B 382 HIS B 400 1 19 HELIX 17 17 ILE B 428 LEU B 432 1 5 HELIX 18 18 ILE B 442 ALA B 461 1 20 HELIX 19 19 THR B 485 ILE B 495 1 11 HELIX 20 20 VAL B 506 ILE B 513 1 8 HELIX 21 21 ALA B 515 GLU B 538 1 24 HELIX 22 22 GLU B 540 VAL B 554 1 15 HELIX 23 23 ARG B 572 PHE B 583 1 12 HELIX 24 24 THR B 596 ASP B 607 1 12 HELIX 25 25 TYR B 629 LYS B 645 1 17 SHEET 1 AA 5 TRP A 264 PRO A 269 0 SHEET 2 AA 5 SER A 285 ASN A 292 -1 O LYS A 289 N PHE A 268 SHEET 3 AA 5 HIS A 298 GLU A 305 -1 O PHE A 299 N ALA A 290 SHEET 4 AA 5 SER A 346 ASP A 352 -1 O LEU A 347 N ILE A 304 SHEET 5 AA 5 VAL A 333 THR A 339 -1 N HIS A 334 O VAL A 350 SHEET 1 AB 3 GLU A 358 THR A 359 0 SHEET 2 AB 3 ILE A 414 GLU A 417 -1 O TRP A 416 N GLU A 358 SHEET 3 AB 3 ARG A 420 LEU A 423 -1 O ARG A 420 N GLU A 417 SHEET 1 AC 2 GLN A 613 THR A 617 0 SHEET 2 AC 2 VAL A 624 SER A 628 -1 O PHE A 625 N LEU A 616 SHEET 1 BA 5 TRP B 264 PRO B 269 0 SHEET 2 BA 5 SER B 285 ASN B 292 -1 O LYS B 289 N PHE B 268 SHEET 3 BA 5 HIS B 298 GLU B 305 -1 O PHE B 299 N ALA B 290 SHEET 4 BA 5 SER B 346 ASP B 352 -1 O LEU B 347 N ILE B 304 SHEET 5 BA 5 VAL B 333 THR B 339 -1 N HIS B 334 O VAL B 350 SHEET 1 BB 3 GLU B 358 THR B 359 0 SHEET 2 BB 3 ILE B 414 GLU B 417 -1 O TRP B 416 N GLU B 358 SHEET 3 BB 3 ARG B 420 LEU B 423 -1 O ARG B 420 N GLU B 417 SHEET 1 BC 2 GLN B 613 THR B 617 0 SHEET 2 BC 2 VAL B 624 SER B 628 -1 O PHE B 625 N LEU B 616 LINK OD1 ASP A 271 MG MG A1648 1555 1555 2.88 LINK O3G AGS A1647 MG MG A1648 1555 1555 2.38 LINK O2B AGS A1647 MG MG A1648 1555 1555 2.70 LINK O2A AGS A1647 MG MG A1648 1555 1555 2.47 LINK OD2 ASP B 271 MG MG B1648 1555 1555 2.86 LINK O2A AGS B1647 MG MG B1648 1555 1555 2.29 LINK O2G AGS B1647 MG MG B1648 1555 1555 2.22 SITE 1 AC1 3 ASP A 271 SER A 285 AGS A1647 SITE 1 AC2 14 LEU A 270 ASP A 271 THR A 275 SER A 285 SITE 2 AC2 14 MET A 287 ARG A 302 HIS A 354 SER A 357 SITE 3 AC2 14 GLU A 358 THR A 359 SER A 412 LYS A 413 SITE 4 AC2 14 ILE A 415 MG A1648 SITE 1 AC3 16 LEU B 270 THR B 272 CYS B 280 SER B 285 SITE 2 AC3 16 MET B 287 ALA B 300 ARG B 302 VAL B 331 SITE 3 AC3 16 ASP B 352 PHE B 353 HIS B 354 SER B 357 SITE 4 AC3 16 GLU B 358 THR B 359 LYS B 413 MG B1648 SITE 1 AC4 3 ASP B 271 SER B 285 AGS B1647 CRYST1 90.312 90.312 230.609 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011073 0.006393 0.000000 0.00000 SCALE2 0.000000 0.012786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004336 0.00000 MTRIX1 1 -0.993000 0.085000 0.081000 -67.59572 1 MTRIX2 1 0.113000 0.866000 0.487000 2.26756 1 MTRIX3 1 -0.029000 0.493000 -0.870000 14.07221 1