HEADER HYDROLASE 23-JUL-13 4BZ3 TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 27-266; COMPND 5 SYNONYM: VIM-2; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: OPINF VECTOR BASED ON PTRIEX VECTOR; SOURCE 9 OTHER_DETAILS: PLASMID DERIVED NON-GENOMIC KEYWDS HYDROLASE, HYDROLASES, MBL, ANTIBIOTIC RESISTANCE. EXPDTA X-RAY DIFFRACTION AUTHOR D.ZOLLMAN,J.BREM,M.A.MCDONOUGH,S.S.VAN BERKEL,C.J.SCHOFIELD REVDAT 6 20-DEC-23 4BZ3 1 REMARK LINK REVDAT 5 21-FEB-18 4BZ3 1 AUTHOR JRNL REVDAT 4 13-JAN-16 4BZ3 1 JRNL REVDAT 3 25-NOV-15 4BZ3 1 JRNL REVDAT 2 17-SEP-14 4BZ3 1 TITLE REMARK REVDAT 1 13-AUG-14 4BZ3 0 JRNL AUTH J.BREM,S.S.VAN BERKEL,D.ZOLLMAN,S.Y.LEE,O.GILEADI, JRNL AUTH 2 P.J.MCHUGH,T.R.WALSH,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE INHIBITION BY JRNL TITL 2 CAPTOPRIL STEREOISOMERS. JRNL REF ANTIMICROB. AGENTS V. 60 142 2015 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 26482303 JRNL DOI 10.1128/AAC.01335-15 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 101596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.113 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8634 - 3.1187 0.98 7226 142 0.1428 0.1470 REMARK 3 2 3.1187 - 2.4755 1.00 7314 148 0.1317 0.1488 REMARK 3 3 2.4755 - 2.1626 1.00 7253 145 0.1120 0.1471 REMARK 3 4 2.1626 - 1.9649 0.97 7068 136 0.0960 0.1163 REMARK 3 5 1.9649 - 1.8241 0.99 7166 148 0.0923 0.1102 REMARK 3 6 1.8241 - 1.7165 0.99 7155 145 0.0860 0.1205 REMARK 3 7 1.7165 - 1.6305 0.99 7219 144 0.0821 0.1290 REMARK 3 8 1.6305 - 1.5596 0.99 7196 143 0.0839 0.1251 REMARK 3 9 1.5596 - 1.4995 0.96 6990 139 0.0856 0.1303 REMARK 3 10 1.4995 - 1.4478 0.98 7077 146 0.0958 0.1592 REMARK 3 11 1.4478 - 1.4025 0.98 7115 151 0.0964 0.1373 REMARK 3 12 1.4025 - 1.3624 0.98 7079 148 0.0990 0.1218 REMARK 3 13 1.3624 - 1.3265 0.98 7114 137 0.1164 0.1489 REMARK 3 14 1.3265 - 1.2942 0.91 6616 136 0.1494 0.1879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.025 3832 REMARK 3 ANGLE : 1.239 5288 REMARK 3 CHIRALITY : 0.077 587 REMARK 3 PLANARITY : 0.006 703 REMARK 3 DIHEDRAL : 12.663 1351 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9163 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101604 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KO3 REMARK 200 REMARK 200 REMARK: TORSION ANGLES OF ASP 84, TRP 87 AND ALA 178 LAY OUTSIDE REMARK 200 THE EXPECTED RAMACHANDRAN REGIONS HOWEVER CLEAR ELECTRON DENSITY REMARK 200 VALIDATED THE PROPOSED CONFORMATIONS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE, 20 % W/V REMARK 280 PEG3350, 1 MM TCEP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.84450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.84450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 465 GLY B 25 REMARK 465 PRO B 26 REMARK 465 VAL B 27 REMARK 465 ASP B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 VAL B 264 REMARK 465 VAL B 265 REMARK 465 GLU B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 62 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 90 CE NZ REMARK 470 SER A 263 CA C O CB OG REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 PHE B 62 CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 146.97 74.23 REMARK 500 TRP A 87 64.65 68.74 REMARK 500 ALA A 178 -105.65 -154.55 REMARK 500 ASP B 84 146.64 73.84 REMARK 500 TRP B 87 68.41 69.19 REMARK 500 ALA B 178 -106.09 -152.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 100.4 REMARK 620 3 HIS A 179 NE2 102.4 107.3 REMARK 620 4 HOH A2098 O 117.0 115.2 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 100.3 REMARK 620 3 HIS A 240 NE2 83.6 103.9 REMARK 620 4 HOH A2098 O 85.8 116.5 139.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS A 251 ND1 105.1 REMARK 620 3 FMT A 400 O1 109.6 108.3 REMARK 620 4 FMT A 401 O1 127.0 108.0 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 300 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 171 OE1 REMARK 620 2 GLU A 171 OE2 54.2 REMARK 620 3 HIS A 229 NE2 106.4 126.8 REMARK 620 4 HOH A2176 O 78.0 99.1 127.0 REMARK 620 5 HOH A2177 O 121.3 73.7 82.8 140.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 98.6 REMARK 620 3 HIS B 179 NE2 102.9 107.3 REMARK 620 4 HOH B2085 O 117.3 115.3 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 CYS B 198 SG 101.0 REMARK 620 3 HIS B 240 NE2 83.8 105.8 REMARK 620 4 HOH B2085 O 85.1 116.9 137.2 REMARK 620 5 HOH B2159 O 158.5 100.5 88.5 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 FMT B 400 O2 126.3 REMARK 620 3 FMT B 401 O1 111.9 99.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 300 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 171 OE2 REMARK 620 2 GLU B 171 OE1 50.4 REMARK 620 3 HIS B 229 NE2 131.9 103.7 REMARK 620 4 HOH B2152 O 72.4 113.0 88.8 REMARK 620 5 HOH B2153 O 89.0 80.5 130.7 135.5 REMARK 620 6 HOH B2155 O 55.6 96.1 156.8 72.2 64.1 REMARK 620 7 HOH B2214 O 119.3 161.8 93.9 71.3 84.6 67.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C09 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BCII WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BCII WITH D- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH D- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE IMP-1 WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE IMP-1 WITH D- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BETA LACTAMASE IN COMPLEX WITH AN INHIBITOR DBREF 4BZ3 A 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 4BZ3 B 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 4BZ3 GLY A 25 UNP Q9K2N0 EXPRESSION TAG SEQADV 4BZ3 PRO A 26 UNP Q9K2N0 EXPRESSION TAG SEQADV 4BZ3 GLY B 25 UNP Q9K2N0 EXPRESSION TAG SEQADV 4BZ3 PRO B 26 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET NA A 300 1 HET FMT A 400 3 HET FMT A 401 3 HET FMT A 402 3 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET NA B 300 1 HET FMT B 400 3 HET FMT B 401 3 HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION FORMUL 3 NA 2(NA 1+) FORMUL 4 FMT 5(C H2 O2) FORMUL 7 ZN 6(ZN 2+) FORMUL 16 HOH *497(H2 O) HELIX 1 1 THR A 35 ILE A 39 5 5 HELIX 2 2 GLY A 88 ILE A 103 1 16 HELIX 3 3 HIS A 116 GLY A 121 1 6 HELIX 4 4 GLY A 122 ALA A 129 1 8 HELIX 5 5 SER A 136 GLY A 147 1 12 HELIX 6 6 CYS A 198 ILE A 200 5 3 HELIX 7 7 GLU A 218 TYR A 230 1 13 HELIX 8 8 LEU A 246 ASN A 261 1 16 HELIX 9 9 THR B 35 ILE B 39 5 5 HELIX 10 10 GLY B 88 ILE B 103 1 16 HELIX 11 11 HIS B 116 GLY B 121 1 6 HELIX 12 12 GLY B 122 ALA B 129 1 8 HELIX 13 13 SER B 136 GLY B 147 1 12 HELIX 14 14 CYS B 198 ILE B 200 5 3 HELIX 15 15 GLU B 218 TYR B 230 1 13 HELIX 16 16 LEU B 246 ASN B 261 1 16 SHEET 1 AA 7 ARG A 45 ALA A 50 0 SHEET 2 AA 7 VAL A 53 PHE A 62 -1 O VAL A 53 N ILE A 49 SHEET 3 AA 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA 7 VAL A 107 VAL A 111 1 N THR A 108 O LEU A 80 SHEET 6 AA 7 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 7 AA 7 HIS A 153 SER A 154 1 O HIS A 153 N ALA A 135 SHEET 1 AB 5 ASP A 163 PHE A 167 0 SHEET 2 AB 5 VAL A 170 TYR A 174 -1 O VAL A 170 N PHE A 167 SHEET 3 AB 5 VAL A 185 VAL A 188 -1 O VAL A 185 N PHE A 173 SHEET 4 AB 5 VAL A 193 GLY A 197 -1 O VAL A 193 N VAL A 188 SHEET 5 AB 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 SHEET 1 BA 7 ARG B 45 ALA B 50 0 SHEET 2 BA 7 VAL B 53 PHE B 62 -1 O VAL B 53 N ILE B 49 SHEET 3 BA 7 ALA B 65 ASP B 76 -1 O ALA B 65 N PHE B 62 SHEET 4 BA 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 BA 7 VAL B 107 VAL B 111 1 N THR B 108 O LEU B 80 SHEET 6 BA 7 ALA B 132 ALA B 135 1 O ALA B 132 N ALA B 110 SHEET 7 BA 7 HIS B 153 SER B 154 1 O HIS B 153 N ALA B 135 SHEET 1 BB 5 ALA B 164 PHE B 167 0 SHEET 2 BB 5 VAL B 170 PHE B 173 -1 O VAL B 170 N PHE B 167 SHEET 3 BB 5 VAL B 185 VAL B 188 -1 O VAL B 185 N PHE B 173 SHEET 4 BB 5 VAL B 193 GLY B 197 -1 O VAL B 193 N VAL B 188 SHEET 5 BB 5 PHE B 235 PRO B 238 1 O PHE B 235 N LEU B 194 LINK NE2 HIS A 114 ZN ZN A 501 1555 1555 2.06 LINK ND1 HIS A 116 ZN ZN A 501 1555 1555 2.02 LINK OD2 ASP A 118 ZN ZN A 502 1555 1555 2.20 LINK NE2 HIS A 153 ZN ZN A 503 1555 1555 2.03 LINK OE1 GLU A 171 NA NA A 300 1555 1555 2.15 LINK OE2 GLU A 171 NA NA A 300 1555 1555 2.57 LINK NE2 HIS A 179 ZN ZN A 501 1555 1555 2.03 LINK SG CYS A 198 ZN ZN A 502 1555 1555 2.30 LINK NE2 HIS A 229 NA NA A 300 1555 1555 2.18 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.10 LINK ND1 HIS A 251 ZN ZN A 503 4557 1555 2.09 LINK NA NA A 300 O HOH A2176 1555 1555 2.36 LINK NA NA A 300 O HOH A2177 1555 1555 2.25 LINK O1 FMT A 400 ZN ZN A 503 1555 1555 2.07 LINK O1 FMT A 401 ZN ZN A 503 1555 1555 1.91 LINK ZN ZN A 501 O HOH A2098 1555 1555 1.94 LINK ZN ZN A 502 O HOH A2098 1555 1555 2.02 LINK NE2 HIS B 114 ZN ZN B 501 1555 1555 2.06 LINK ND1 HIS B 116 ZN ZN B 501 1555 1555 2.02 LINK OD2 ASP B 118 ZN ZN B 502 1555 1555 2.18 LINK NE2 HIS B 153 ZN ZN B 503 1555 1555 2.04 LINK OE2 GLU B 171 NA NA B 300 1555 1555 2.78 LINK OE1 GLU B 171 NA NA B 300 1555 1555 2.11 LINK NE2 HIS B 179 ZN ZN B 501 1555 1555 2.02 LINK SG CYS B 198 ZN ZN B 502 1555 1555 2.30 LINK NE2 HIS B 229 NA NA B 300 1555 1555 2.13 LINK NE2 HIS B 240 ZN ZN B 502 1555 1555 2.09 LINK NA NA B 300 O HOH B2152 1555 1555 2.07 LINK NA NA B 300 O HOH B2153 1555 1555 2.23 LINK NA NA B 300 O HOH B2155 1555 1555 3.17 LINK NA NA B 300 O HOH B2214 1555 1555 2.63 LINK O2 FMT B 400 ZN ZN B 503 1555 1555 1.94 LINK O1 FMT B 401 ZN ZN B 503 1555 1555 2.02 LINK ZN ZN B 501 O HOH B2085 1555 1555 1.94 LINK ZN ZN B 502 O HOH B2085 1555 1555 2.04 LINK ZN ZN B 502 O HOH B2159 1555 1555 2.18 SITE 1 AC1 4 GLU A 171 HIS A 229 HOH A2176 HOH A2177 SITE 1 AC2 8 ALA A 132 THR A 133 THR A 152 HIS A 153 SITE 2 AC2 8 HIS A 251 FMT A 401 ZN A 503 HOH A2121 SITE 1 AC3 7 ALA A 132 HIS A 153 HIS A 251 ASN A 254 SITE 2 AC3 7 FMT A 400 ZN A 503 HOH A2262 SITE 1 AC4 10 HIS A 179 CYS A 198 ASN A 210 HIS A 240 SITE 2 AC4 10 ZN A 502 HOH A2098 HOH A2181 HOH A2182 SITE 3 AC4 10 HOH A2190 HOH A2207 SITE 1 AC5 5 HIS A 114 HIS A 116 HIS A 179 ZN A 502 SITE 2 AC5 5 HOH A2098 SITE 1 AC6 7 ASP A 118 CYS A 198 HIS A 240 FMT A 402 SITE 2 AC6 7 ZN A 501 HOH A2098 HOH A2182 SITE 1 AC7 4 HIS A 153 HIS A 251 FMT A 400 FMT A 401 SITE 1 AC8 5 GLU B 171 HIS B 229 HOH B2152 HOH B2153 SITE 2 AC8 5 HOH B2214 SITE 1 AC9 6 ALA B 132 HIS B 153 FMT B 401 ZN B 503 SITE 2 AC9 6 HOH B2099 HOH B2237 SITE 1 BC1 6 ALA B 132 THR B 152 HIS B 153 FMT B 400 SITE 2 BC1 6 ZN B 503 HOH B2098 SITE 1 BC2 5 HIS B 114 HIS B 116 HIS B 179 ZN B 502 SITE 2 BC2 5 HOH B2085 SITE 1 BC3 6 ASP B 118 CYS B 198 HIS B 240 ZN B 501 SITE 2 BC3 6 HOH B2085 HOH B2159 SITE 1 BC4 3 HIS B 153 FMT B 400 FMT B 401 CRYST1 102.955 79.689 68.171 90.00 130.56 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009713 0.000000 0.008313 0.00000 SCALE2 0.000000 0.012549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019308 0.00000