HEADER HYDROLASE 05-AUG-13 4C0L TITLE CRYSTAL STRUCTURE OF DROSOPHILA MIRO EF HAND AND CGTPASE DOMAINS BOUND TITLE 2 TO ONE MAGNESIUM ION AND MG:GDP (MGGDP-MIROS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL RHO GTPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ELM1, ELM2, AND CGTPASE, RESIDUES 201-467; COMPND 5 SYNONYM: MIRO, DMIRO; COMPND 6 EC: 3.6.5.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET17B; SOURCE 11 OTHER_DETAILS: DROSOPHILA GENOMICS RESOURCE CENTER CLONE RE22983 KEYWDS HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE, KINESIN, KEYWDS 2 MITOPHAGY, HIDDEN EF HANDS EXPDTA X-RAY DIFFRACTION AUTHOR J.L.KLOSOWIAK,P.J.FOCIA,Z.WAWRZAK,S.CHAKRAVARTHY,E.C.LANDAHL, AUTHOR 2 D.M.FREYMANN,S.E.RICE REVDAT 4 01-MAY-24 4C0L 1 REMARK REVDAT 3 15-NOV-23 4C0L 1 REMARK LINK ATOM REVDAT 2 13-NOV-13 4C0L 1 JRNL REVDAT 1 09-OCT-13 4C0L 0 JRNL AUTH J.L.KLOSOWIAK,P.J.FOCIA,S.CHAKRAVARTHY,E.C.LANDAHL, JRNL AUTH 2 D.M.FREYMANN,S.E.RICE JRNL TITL STRUCTURAL COUPLING OF THE EF HAND AND C-TERMINAL GTPASE JRNL TITL 2 DOMAINS IN THE MITOCHONDRIAL PROTEIN MIRO. JRNL REF EMBO REP. V. 14 968 2013 JRNL REFN ISSN 1469-221X JRNL PMID 24071720 JRNL DOI 10.1038/EMBOR.2013.151 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 12299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8259 - 5.9788 0.99 2716 145 0.1913 0.2302 REMARK 3 2 5.9788 - 4.7552 1.00 2717 142 0.2149 0.2036 REMARK 3 3 4.7552 - 4.1570 1.00 2738 142 0.1872 0.2569 REMARK 3 4 4.1570 - 3.7782 0.99 2746 134 0.1988 0.2586 REMARK 3 5 3.7782 - 3.5081 0.99 2726 144 0.2328 0.2470 REMARK 3 6 3.5081 - 3.3017 0.99 2699 140 0.2631 0.3674 REMARK 3 7 3.3017 - 3.1366 0.98 2638 135 0.2951 0.4071 REMARK 3 8 3.1366 - 3.0003 0.85 2333 125 0.3269 0.3968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3381 REMARK 3 ANGLE : 0.523 4567 REMARK 3 CHIRALITY : 0.040 496 REMARK 3 PLANARITY : 0.002 580 REMARK 3 DIHEDRAL : 9.809 1261 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT NUMBER OF REFLECTIONS TREATS REMARK 3 ANOMALOUS PAIRS SEPARATELY. REMARK 4 REMARK 4 4C0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12487 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 52.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: INITIAL MODEL FROM PRIOR DATASET REMARK 200 REMARK 200 REMARK: MOLECULAR REPLACEMENT MODEL WAS A MIRO STRUCTURE REMARK 200 DETERMINED BY SAD PHASING OF SEMET-LABELED PROTEIN. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0 MG/ML MIROS,1.9 M LISO4, 0.1 M BIS REMARK 280 -TRIS PH 8.0, 5 MM EGTA; CRYSTALS WERE SOAKED IN 30 MM MGCL2, 20 REMARK 280 MM GDP FOR 72H PRIOR TO DATA COLLECTION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.30000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.65000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 201 REMARK 465 MET A 202 REMARK 465 GLU A 203 REMARK 465 GLU A 204 REMARK 465 GLN A 205 REMARK 465 LEU A 610 REMARK 465 ARG A 611 REMARK 465 GLN A 612 REMARK 465 PHE A 613 REMARK 465 GLY A 614 REMARK 465 LEU A 615 REMARK 465 MET A 616 REMARK 465 THR A 617 REMARK 465 HIS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 434 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 436 CB CG OD1 OD2 REMARK 470 ALA A 438 CB REMARK 470 LYS A 439 CB CG CD CE NZ REMARK 470 ARG A 440 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 441 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 460 O3B GDP A 1614 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 -81.62 -134.70 REMARK 500 SER A 376 -4.41 -147.62 REMARK 500 SER A 442 41.44 -94.72 REMARK 500 SER A 445 -2.43 -150.05 REMARK 500 ARG A 507 -73.33 -72.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2017 DISTANCE = 6.00 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 UNKNOWN ATOM OR ION (UNX): UNIDENTIFIED FEATURE ASSIGNED AS REMARK 600 UNX UNKNOWN ATOM OR ION. REMARK 600 UNKNOWN LIGAND (HSE): UNIDENTIFIED LIGAND MODELED AS REMARK 600 HOMOSERINE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1613 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 OD1 REMARK 620 2 ASP A 227 OD1 59.2 REMARK 620 3 LEU A 229 O 68.0 67.2 REMARK 620 4 GLU A 234 OE2 145.8 141.8 94.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1616 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 343 OD1 REMARK 620 2 ASP A 345 OD1 82.2 REMARK 620 3 ASP A 345 OD2 129.6 49.0 REMARK 620 4 ASP A 347 OD1 81.9 69.5 90.1 REMARK 620 5 ALA A 349 O 74.8 152.5 155.5 92.1 REMARK 620 6 GLU A 354 OE1 101.0 110.0 87.5 177.0 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1615 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 460 OG1 REMARK 620 2 ASP A 505 OD2 157.1 REMARK 620 3 ASP A 505 OD1 107.4 50.1 REMARK 620 4 GDP A1614 O3B 59.6 118.2 91.0 REMARK 620 5 HOH A2008 O 76.7 126.3 168.4 81.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSE A 1617 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C0J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DROSOPHILA MIRO EF HAND AND CGTPASE DOMAINS IN REMARK 900 THE APO STATE (APO-MIROS) REMARK 900 RELATED ID: 4C0K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DROSOPHILA MIRO EF HAND AND CGTPASE DOMAINS REMARK 900 BOUND TO ONE CALCIUM ION (CA-MIROS) DBREF 4C0L A 201 617 UNP Q8IMX7 MIRO_DROME 201 617 SEQADV 4C0L HIS A 618 UNP Q8IMX7.1 EXPRESSION TAG SEQADV 4C0L HIS A 619 UNP Q8IMX7.1 EXPRESSION TAG SEQADV 4C0L HIS A 620 UNP Q8IMX7.1 EXPRESSION TAG SEQADV 4C0L HIS A 621 UNP Q8IMX7.1 EXPRESSION TAG SEQADV 4C0L HIS A 622 UNP Q8IMX7.1 EXPRESSION TAG SEQADV 4C0L HIS A 623 UNP Q8IMX7.1 EXPRESSION TAG SEQRES 1 A 423 MET MET GLU GLU GLN GLU LEU THR SER ALA CYS LYS LYS SEQRES 2 A 423 SER LEU VAL ARG ILE PHE LYS ILE CYS ASP ILE ASP GLY SEQRES 3 A 423 ASP ASN LEU LEU ASN ASP TYR GLU LEU ASN LEU PHE GLN SEQRES 4 A 423 ARG ARG CYS PHE ASN THR PRO LEU GLN PRO GLN ILE LEU SEQRES 5 A 423 ASP GLU VAL LYS ALA VAL ILE GLN LYS ASN VAL PRO ASP SEQRES 6 A 423 GLY ILE TYR ASN ASP ALA VAL THR LEU LYS GLY PHE LEU SEQRES 7 A 423 PHE LEU HIS CYS LEU PHE ILE GLN ARG GLY ARG ASN GLU SEQRES 8 A 423 THR THR TRP ALA VAL LEU ARG ARG PHE GLY TYR ASN ASP SEQRES 9 A 423 GLN LEU GLU MET CYS GLN GLU TYR LEU ARG PRO PRO LEU SEQRES 10 A 423 LYS ILE PRO PRO GLY SER SER THR GLU LEU SER HIS ARG SEQRES 11 A 423 GLY GLN GLN PHE LEU ILE ALA VAL PHE GLU ARG TYR ASP SEQRES 12 A 423 ARG ASP GLY ASP GLY ALA LEU SER PRO GLU GLU HIS LYS SEQRES 13 A 423 MET LEU PHE SER THR CYS PRO ALA ALA PRO TRP SER TYR SEQRES 14 A 423 SER THR ASP ILE ARG LYS SER CYS PRO ILE ASN GLU THR SEQRES 15 A 423 THR GLY TRP VAL THR LEU HIS GLY TRP LEU CYS ARG TRP SEQRES 16 A 423 THR LEU MET THR LEU ILE ASP VAL VAL LYS THR MET GLU SEQRES 17 A 423 TYR LEU ALA TYR LEU GLY PHE ASN VAL HIS GLU ASN ASP SEQRES 18 A 423 SER GLN LEU ALA ALA ILE HIS VAL THR ARG GLU ARG ARG SEQRES 19 A 423 ILE ASP LEU ALA LYS ARG GLN SER SER ARG SER VAL TYR SEQRES 20 A 423 LYS CYS HIS VAL ILE GLY PRO LYS GLY SER GLY LYS THR SEQRES 21 A 423 GLY MET CYS ARG GLY PHE LEU VAL GLU ASP MET HIS LYS SEQRES 22 A 423 LEU ILE GLY LYS GLU PHE LYS THR ASN VAL VAL ASN CYS SEQRES 23 A 423 ILE ASN SER VAL GLN VAL TYR GLY GLN GLU LYS HIS LEU SEQRES 24 A 423 ILE LEU ARG ASP ILE ASP VAL ARG HIS ALA LEU ASP PRO SEQRES 25 A 423 LEU GLN PRO GLN GLU VAL ASN CYS ASP VAL ALA CYS LEU SEQRES 26 A 423 VAL TYR ASP SER SER ASN PRO ARG SER PHE GLU TYR VAL SEQRES 27 A 423 ALA ARG ILE TYR ILE LYS TYR TYR ALA GLU SER LYS ILE SEQRES 28 A 423 PRO VAL MET ILE VAL GLY THR LYS CYS ASP MET ASP GLU SEQRES 29 A 423 ARG ARG GLN ASP TYR LEU MET GLN PRO SER GLU PHE CYS SEQRES 30 A 423 ASP LYS TYR LYS LEU LEU PRO PRO HIS LEU PHE SER LEU SEQRES 31 A 423 LYS THR ASN LYS LYS GLU LEU TYR THR LYS LEU ALA THR SEQRES 32 A 423 MET ALA ALA PHE PRO HIS LEU ARG GLN PHE GLY LEU MET SEQRES 33 A 423 THR HIS HIS HIS HIS HIS HIS HET UNX A1618 1 HET SO4 A1610 5 HET SO4 A1611 5 HET SO4 A1612 5 HET NA A1613 1 HET GDP A1614 28 HET MG A1615 1 HET MG A1616 1 HET HSE A1617 8 HETNAM UNX UNKNOWN ATOM OR ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM HSE L-HOMOSERINE FORMUL 2 UNX X FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 NA NA 1+ FORMUL 7 GDP C10 H15 N5 O11 P2 FORMUL 8 MG 2(MG 2+) FORMUL 10 HSE C4 H9 N O3 FORMUL 11 HOH *17(H2 O) HELIX 1 1 THR A 208 ASP A 223 1 16 HELIX 2 2 ASN A 231 ASN A 244 1 14 HELIX 3 3 GLN A 248 VAL A 263 1 16 HELIX 4 4 THR A 273 GLN A 286 1 14 HELIX 5 5 ARG A 289 PHE A 300 1 12 HELIX 6 6 CYS A 309 ARG A 314 1 6 HELIX 7 7 SER A 328 TYR A 342 1 15 HELIX 8 8 SER A 351 PHE A 359 1 9 HELIX 9 9 SER A 368 ARG A 374 1 7 HELIX 10 10 LEU A 388 ASP A 402 1 15 HELIX 11 11 ASP A 402 GLY A 414 1 13 HELIX 12 12 GLY A 414 GLU A 419 1 6 HELIX 13 13 SER A 422 ALA A 425 5 4 HELIX 14 14 LYS A 459 GLY A 465 1 7 HELIX 15 15 ASP A 470 ILE A 475 5 6 HELIX 16 16 GLN A 514 ASN A 519 1 6 HELIX 17 17 SER A 534 TYR A 546 1 13 HELIX 18 18 GLN A 572 TYR A 580 1 9 HELIX 19 19 LYS A 595 PHE A 607 1 13 SHEET 1 AA 2 ILE A 267 TYR A 268 0 SHEET 2 AA 2 ALA A 271 VAL A 272 -1 O ALA A 271 N TYR A 268 SHEET 1 AB 2 SER A 324 LEU A 327 0 SHEET 2 AB 2 ILE A 427 THR A 430 -1 O HIS A 428 N GLU A 326 SHEET 1 AC 2 ALA A 349 LEU A 350 0 SHEET 2 AC 2 VAL A 386 THR A 387 -1 O VAL A 386 N LEU A 350 SHEET 1 AD 6 CYS A 486 VAL A 492 0 SHEET 2 AD 6 GLN A 495 VAL A 506 -1 O GLN A 495 N VAL A 492 SHEET 3 AD 6 VAL A 446 PRO A 454 1 O TYR A 447 N ILE A 500 SHEET 4 AD 6 VAL A 522 ASP A 528 1 O VAL A 522 N HIS A 450 SHEET 5 AD 6 VAL A 553 THR A 558 1 O MET A 554 N LEU A 525 SHEET 6 AD 6 HIS A 586 PHE A 588 1 O HIS A 586 N GLY A 557 LINK OD1 ASP A 223 NA NA A1613 1555 1555 2.79 LINK OD1 ASP A 227 NA NA A1613 1555 1555 2.99 LINK O LEU A 229 NA NA A1613 1555 1555 2.52 LINK OE2 GLU A 234 NA NA A1613 1555 1555 2.42 LINK OD1 ASP A 343 MG MG A1616 1555 1555 2.09 LINK OD1 ASP A 345 MG MG A1616 1555 1555 2.07 LINK OD2 ASP A 345 MG MG A1616 1555 1555 2.90 LINK OD1 ASP A 347 MG MG A1616 1555 1555 2.11 LINK O ALA A 349 MG MG A1616 1555 1555 2.06 LINK OE1 GLU A 354 MG MG A1616 1555 1555 2.12 LINK OG1 THR A 460 MG MG A1615 1555 1555 2.10 LINK OD2 ASP A 505 MG MG A1615 1555 1555 2.11 LINK OD1 ASP A 505 MG MG A1615 1555 1555 2.83 LINK O3B GDP A1614 MG MG A1615 1555 1555 2.07 LINK MG MG A1615 O HOH A2008 1555 1555 2.08 CISPEP 1 PRO A 608 HIS A 609 0 3.44 SITE 1 AC1 6 LYS A 375 ARG A 464 LYS A 477 PHE A 479 SITE 2 AC1 6 LYS A 480 THR A 481 SITE 1 AC2 1 LEU A 229 SITE 1 AC3 5 ARG A 240 ARG A 241 HIS A 508 ALA A 509 SITE 2 AC3 5 TYR A 537 SITE 1 AC4 6 ASP A 223 ASP A 225 ASP A 227 LEU A 229 SITE 2 AC4 6 ASN A 231 GLU A 234 SITE 1 AC5 18 PRO A 454 LYS A 455 GLY A 456 SER A 457 SITE 2 AC5 18 GLY A 458 LYS A 459 THR A 460 GLY A 461 SITE 3 AC5 18 ILE A 475 ASP A 505 LYS A 559 ASP A 561 SITE 4 AC5 18 MET A 562 SER A 589 LEU A 590 LYS A 591 SITE 5 AC5 18 MG A1615 HOH A2008 SITE 1 AC6 4 THR A 460 ASP A 505 GDP A1614 HOH A2008 SITE 1 AC7 5 ASP A 343 ASP A 345 ASP A 347 ALA A 349 SITE 2 AC7 5 GLU A 354 SITE 1 AC8 2 LEU A 280 HIS A 281 CRYST1 81.510 81.510 154.950 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012268 0.007083 0.000000 0.00000 SCALE2 0.000000 0.014166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006454 0.00000