HEADER TRANSFERASE 16-AUG-13 4C23 TITLE L-FUCULOSE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-FUCULOSE KINASE FUCK; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-FUCULOSE KINASE; COMPND 5 EC: 2.7.1.51; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSFERASE, FUCOSE PROCESSING EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HIGGINS,M.D.L.SUITS,C.MARSTERS,A.B.BORASTON REVDAT 4 20-DEC-23 4C23 1 REMARK REVDAT 3 19-MAR-14 4C23 1 JRNL REVDAT 2 08-JAN-14 4C23 1 JRNL REVDAT 1 11-DEC-13 4C23 0 JRNL AUTH M.A.HIGGINS,M.D.SUITS,C.MARSTERS,A.B.BORASTON JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF FUCOSE-PROCESSING JRNL TITL 2 ENZYMES FROM STREPTOCOCCUS PNEUMONIAE. JRNL REF J.MOL.BIOL. V. 426 1469 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24333485 JRNL DOI 10.1016/J.JMB.2013.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 63900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3418 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.71000 REMARK 3 B22 (A**2) : -3.71000 REMARK 3 B33 (A**2) : 7.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7633 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10340 ; 1.633 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 949 ; 6.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 340 ;38.917 ;24.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1372 ;16.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.136 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1189 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5654 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3775 ; 2.070 ; 3.059 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4719 ; 3.052 ; 4.579 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3858 ; 2.481 ; 3.313 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.521 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.479 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4C23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290058026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : RH COATED REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CGK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SPFCSK AT A CONCENTRATION OF 24 MG ML REMARK 280 -1, BUFFERED IN 20 MM TRIS-HCL (PH 7.2), 150 MM NACL, 1 MM REMARK 280 MANGANESE CHLORIDE, AND 1 MM DTT WAS CRYSTALLIZED BY MIXING REMARK 280 EQUAL VOLUMES WITH A SOLUTION CONSISTING OF 4% (V PER V) REMARK 280 ETHYLENE-GLYCOL, 100 MM 4-(2-HYDROXYETHYL)-1- REMARK 280 PIPERAZINEETHANESULFONIC ACID (PH 7.5), AND 1.50 M AMMONIUM REMARK 280 SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.00650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 210.00975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.00325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 ASN B 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 LYS A 444 CG CD CE NZ REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 ASP B 315 CG OD1 OD2 REMARK 470 ASP B 316 CG OD1 OD2 REMARK 470 GLU B 360 CG CD OE1 OE2 REMARK 470 ARG B 404 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 454 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 293 OE1 GLU B 334 1.92 REMARK 500 O PHE B 146 O HOH B 2091 1.92 REMARK 500 O HOH A 2006 O HOH A 2024 2.03 REMARK 500 OH TYR B 20 O HOH B 2015 2.07 REMARK 500 OD2 ASP A 198 O HOH A 2130 2.10 REMARK 500 O HOH B 2141 O HOH B 2142 2.15 REMARK 500 O LEU A -5 O HOH A 2002 2.16 REMARK 500 NE2 GLN B 125 O HOH B 2079 2.16 REMARK 500 O HOH A 2212 O HOH A 2213 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A -1 N GLY A -1 CA 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A -1 N - CA - C ANGL. DEV. = 25.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A -2 -166.03 -124.16 REMARK 500 ASN A 24 9.28 56.69 REMARK 500 VAL A 79 -40.25 70.95 REMARK 500 SER A 142 76.59 -155.56 REMARK 500 LYS A 243 46.89 -97.71 REMARK 500 THR A 254 -89.37 17.67 REMARK 500 TRP A 255 71.36 -112.70 REMARK 500 LEU A 295 3.89 -55.54 REMARK 500 HIS A 356 -66.96 -129.82 REMARK 500 GLU A 360 85.10 -65.51 REMARK 500 GLU A 447 -80.39 -32.97 REMARK 500 SER B 0 -39.09 -162.81 REMARK 500 VAL B 79 -39.10 62.47 REMARK 500 SER B 142 66.58 -150.25 REMARK 500 GLU B 208 151.18 -49.96 REMARK 500 ARG B 308 19.26 -61.63 REMARK 500 HIS B 356 -71.31 -141.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A -1 SER A 0 -149.76 REMARK 500 GLY A 253 THR A 254 142.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2231 DISTANCE = 5.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1467 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C20 RELATED DB: PDB REMARK 900 L-FUCOSE ISOMERASE REMARK 900 RELATED ID: 4C21 RELATED DB: PDB REMARK 900 L-FUCOSE ISOMERASE IN COMPLEX WITH FUCITOL REMARK 900 RELATED ID: 4C22 RELATED DB: PDB REMARK 900 L-FUCOSE ISOMERASE IN COMPLEX WITH FUCULOSE REMARK 900 RELATED ID: 4C24 RELATED DB: PDB REMARK 900 L-FUCULOSE 1-PHOSPHATE ALDOLASE REMARK 900 RELATED ID: 4C25 RELATED DB: PDB REMARK 900 L-FUCULOSE 1-PHOSPHATE ALDOLASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 POLYPEPTIDE A INCLUDES THE PRECEDING N-TERMINAL AFFINITY REMARK 999 TAG. MET1 WAS NOT INCLUDED IN RECOMBINANT CONSTRUCT. DBREF 4C23 A 2 467 UNP Q97N88 Q97N88_STRPN 2 467 DBREF 4C23 B 2 467 UNP Q97N88 Q97N88_STRPN 2 467 SEQADV 4C23 LEU A -5 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 VAL A -4 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 PRO A -3 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 ARG A -2 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 GLY A -1 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 SER A 0 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 HIS A 1 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 LEU B -5 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 VAL B -4 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 PRO B -3 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 ARG B -2 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 GLY B -1 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 SER B 0 UNP Q97N88 EXPRESSION TAG SEQADV 4C23 HIS B 1 UNP Q97N88 EXPRESSION TAG SEQRES 1 A 473 LEU VAL PRO ARG GLY SER HIS GLU ALA VAL LEU ALA ILE SEQRES 2 A 473 ASP LEU GLY ALA THR SER GLY ARG ALA ILE VAL GLY TYR SEQRES 3 A 473 LEU SER GLU ASN LYS LEU VAL MET GLU GLU ILE ASN ARG SEQRES 4 A 473 PHE SER ASN LEU PRO ILE ARG VAL LYS GLY HIS LEU SER SEQRES 5 A 473 TRP ASP ILE ASP PHE LEU LEU ALA LYS ILE LEU GLU SER SEQRES 6 A 473 ILE ARG LEU ALA ASN THR SER TYR LYS ILE LEU SER ILE SEQRES 7 A 473 GLY ILE ASP THR TRP GLY VAL ASP PHE GLY LEU ILE ASP SEQRES 8 A 473 ASN GLU GLY LYS LEU LEU LEU GLN PRO VAL HIS TYR ARG SEQRES 9 A 473 ASP GLU ARG THR LYS GLY VAL LEU LYS GLU ILE SER GLU SEQRES 10 A 473 MET THR GLU LEU GLU LYS LEU TYR SER GLU THR GLY ASN SEQRES 11 A 473 GLN ILE MET GLU ILE ASN THR LEU PHE GLN LEU PHE LYS SEQRES 12 A 473 ALA ARG GLN GLU SER PRO ASP SER PHE TYR LYS THR ASN SEQRES 13 A 473 LYS ILE LEU LEU MET PRO ASP LEU PHE ASN TYR LEU LEU SEQRES 14 A 473 THR GLY LYS PHE ALA THR GLU LYS SER ILE ALA SER THR SEQRES 15 A 473 THR GLN LEU PHE ASP PRO ARG SER GLN ASN TRP ASN GLN SEQRES 16 A 473 ASN ILE LEU LYS LEU PHE GLU LEU ASP SER SER LEU LEU SEQRES 17 A 473 PRO GLU ILE VAL SER GLU GLY ASN VAL LEU GLY ARG ILE SEQRES 18 A 473 LYS GLU GLU TYR GLY LEU GLY ASP ILE PRO VAL VAL ASN SEQRES 19 A 473 VAL CYS SER HIS ASP THR ALA SER ALA ILE VAL SER VAL SEQRES 20 A 473 PRO LYS THR GLU GLY SER LEU PHE ILE SER SER GLY THR SEQRES 21 A 473 TRP SER LEU VAL GLY VAL GLU LEU THR SER PRO ILE LEU SEQRES 22 A 473 THR THR GLU SER PHE SER TYR GLY PHE THR ASN GLU VAL SEQRES 23 A 473 GLY LYS ASP GLY VAL ILE THR PHE LEU LYS ASN CYS THR SEQRES 24 A 473 GLY LEU TRP ILE ILE GLU GLU LEU ARG ARG SER PHE GLU SEQRES 25 A 473 ARG ARG GLY LYS ALA TYR SER PHE ASP ASP ILE ARG THR SEQRES 26 A 473 MET VAL GLU LYS GLU LYS GLU ASN LEU PRO LEU ILE ASP SEQRES 27 A 473 THR GLU SER THR GLU PHE ALA THR GLU SER ASP MET HIS SEQRES 28 A 473 LYS THR LEU THR GLU TYR LEU ALA TYR HIS HIS GLU THR SEQRES 29 A 473 ARG GLU TRP THR ASP GLY GLN LEU PHE LYS ILE VAL TYR SEQRES 30 A 473 GLU SER LEU ALA GLU THR TYR ARG LYS ALA ILE GLU LEU SEQRES 31 A 473 LEU GLU GLU LEU THR HIS LYS VAL TYR LYS ARG ILE TYR SEQRES 32 A 473 VAL ILE GLY GLY GLY ALA ARG ALA SER TYR PHE ASN GLN SEQRES 33 A 473 MET ILE ALA ASP ARG THR GLY LYS GLU VAL LEU THR GLY SEQRES 34 A 473 LEU THR GLU ALA THR ALA VAL GLY ASN ILE VAL VAL GLN SEQRES 35 A 473 LEU ILE ALA MET GLY GLN LEU LYS GLY MET GLU GLU ALA SEQRES 36 A 473 HIS HIS VAL ILE GLU GLU PHE LEU GLN LEU GLU SER TYR SEQRES 37 A 473 TYR SER GLN LYS ASN SEQRES 1 B 473 LEU VAL PRO ARG GLY SER HIS GLU ALA VAL LEU ALA ILE SEQRES 2 B 473 ASP LEU GLY ALA THR SER GLY ARG ALA ILE VAL GLY TYR SEQRES 3 B 473 LEU SER GLU ASN LYS LEU VAL MET GLU GLU ILE ASN ARG SEQRES 4 B 473 PHE SER ASN LEU PRO ILE ARG VAL LYS GLY HIS LEU SER SEQRES 5 B 473 TRP ASP ILE ASP PHE LEU LEU ALA LYS ILE LEU GLU SER SEQRES 6 B 473 ILE ARG LEU ALA ASN THR SER TYR LYS ILE LEU SER ILE SEQRES 7 B 473 GLY ILE ASP THR TRP GLY VAL ASP PHE GLY LEU ILE ASP SEQRES 8 B 473 ASN GLU GLY LYS LEU LEU LEU GLN PRO VAL HIS TYR ARG SEQRES 9 B 473 ASP GLU ARG THR LYS GLY VAL LEU LYS GLU ILE SER GLU SEQRES 10 B 473 MET THR GLU LEU GLU LYS LEU TYR SER GLU THR GLY ASN SEQRES 11 B 473 GLN ILE MET GLU ILE ASN THR LEU PHE GLN LEU PHE LYS SEQRES 12 B 473 ALA ARG GLN GLU SER PRO ASP SER PHE TYR LYS THR ASN SEQRES 13 B 473 LYS ILE LEU LEU MET PRO ASP LEU PHE ASN TYR LEU LEU SEQRES 14 B 473 THR GLY LYS PHE ALA THR GLU LYS SER ILE ALA SER THR SEQRES 15 B 473 THR GLN LEU PHE ASP PRO ARG SER GLN ASN TRP ASN GLN SEQRES 16 B 473 ASN ILE LEU LYS LEU PHE GLU LEU ASP SER SER LEU LEU SEQRES 17 B 473 PRO GLU ILE VAL SER GLU GLY ASN VAL LEU GLY ARG ILE SEQRES 18 B 473 LYS GLU GLU TYR GLY LEU GLY ASP ILE PRO VAL VAL ASN SEQRES 19 B 473 VAL CYS SER HIS ASP THR ALA SER ALA ILE VAL SER VAL SEQRES 20 B 473 PRO LYS THR GLU GLY SER LEU PHE ILE SER SER GLY THR SEQRES 21 B 473 TRP SER LEU VAL GLY VAL GLU LEU THR SER PRO ILE LEU SEQRES 22 B 473 THR THR GLU SER PHE SER TYR GLY PHE THR ASN GLU VAL SEQRES 23 B 473 GLY LYS ASP GLY VAL ILE THR PHE LEU LYS ASN CYS THR SEQRES 24 B 473 GLY LEU TRP ILE ILE GLU GLU LEU ARG ARG SER PHE GLU SEQRES 25 B 473 ARG ARG GLY LYS ALA TYR SER PHE ASP ASP ILE ARG THR SEQRES 26 B 473 MET VAL GLU LYS GLU LYS GLU ASN LEU PRO LEU ILE ASP SEQRES 27 B 473 THR GLU SER THR GLU PHE ALA THR GLU SER ASP MET HIS SEQRES 28 B 473 LYS THR LEU THR GLU TYR LEU ALA TYR HIS HIS GLU THR SEQRES 29 B 473 ARG GLU TRP THR ASP GLY GLN LEU PHE LYS ILE VAL TYR SEQRES 30 B 473 GLU SER LEU ALA GLU THR TYR ARG LYS ALA ILE GLU LEU SEQRES 31 B 473 LEU GLU GLU LEU THR HIS LYS VAL TYR LYS ARG ILE TYR SEQRES 32 B 473 VAL ILE GLY GLY GLY ALA ARG ALA SER TYR PHE ASN GLN SEQRES 33 B 473 MET ILE ALA ASP ARG THR GLY LYS GLU VAL LEU THR GLY SEQRES 34 B 473 LEU THR GLU ALA THR ALA VAL GLY ASN ILE VAL VAL GLN SEQRES 35 B 473 LEU ILE ALA MET GLY GLN LEU LYS GLY MET GLU GLU ALA SEQRES 36 B 473 HIS HIS VAL ILE GLU GLU PHE LEU GLN LEU GLU SER TYR SEQRES 37 B 473 TYR SER GLN LYS ASN HET EDO B1467 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *471(H2 O) HELIX 1 1 ASP A 48 SER A 66 1 19 HELIX 2 2 ASP A 99 LYS A 103 5 5 HELIX 3 3 GLY A 104 THR A 113 1 10 HELIX 4 4 GLU A 114 GLY A 123 1 10 HELIX 5 5 ASN A 130 SER A 142 1 13 HELIX 6 6 SER A 142 TYR A 147 1 6 HELIX 7 7 MET A 155 GLY A 165 1 11 HELIX 8 8 LYS A 171 SER A 175 1 5 HELIX 9 9 ASN A 188 GLU A 196 1 9 HELIX 10 10 ASP A 198 LEU A 202 5 5 HELIX 11 11 LYS A 216 GLY A 220 5 5 HELIX 12 12 HIS A 232 SER A 240 1 9 HELIX 13 13 THR A 268 TYR A 274 1 7 HELIX 14 14 LYS A 282 GLY A 284 5 3 HELIX 15 15 LEU A 295 ARG A 307 1 13 HELIX 16 16 SER A 313 GLU A 324 1 12 HELIX 17 17 ASP A 332 THR A 336 5 5 HELIX 18 18 ASP A 343 HIS A 356 1 14 HELIX 19 19 THR A 362 HIS A 390 1 29 HELIX 20 20 ALA A 405 GLY A 417 1 13 HELIX 21 21 GLU A 426 MET A 440 1 15 HELIX 22 22 GLY A 445 LEU A 457 1 13 HELIX 23 23 ASP B 48 TYR B 67 1 20 HELIX 24 24 GLY B 104 THR B 113 1 10 HELIX 25 25 GLU B 114 GLY B 123 1 10 HELIX 26 26 ASN B 130 SER B 142 1 13 HELIX 27 27 SER B 142 TYR B 147 1 6 HELIX 28 28 MET B 155 GLY B 165 1 11 HELIX 29 29 LYS B 171 SER B 175 1 5 HELIX 30 30 ASN B 188 PHE B 195 1 8 HELIX 31 31 ASP B 198 LEU B 202 5 5 HELIX 32 32 LYS B 216 GLY B 220 5 5 HELIX 33 33 HIS B 232 SER B 240 1 9 HELIX 34 34 THR B 268 GLY B 275 1 8 HELIX 35 35 LYS B 282 GLY B 284 5 3 HELIX 36 36 LEU B 295 ARG B 308 1 14 HELIX 37 37 SER B 313 GLU B 324 1 12 HELIX 38 38 ASP B 332 THR B 336 5 5 HELIX 39 39 ASP B 343 HIS B 356 1 14 HELIX 40 40 THR B 362 HIS B 390 1 29 HELIX 41 41 ALA B 405 GLY B 417 1 13 HELIX 42 42 GLU B 426 MET B 440 1 15 HELIX 43 43 LYS B 444 LEU B 457 1 14 SHEET 1 AA 6 LYS A 25 SER A 35 0 SHEET 2 AA 6 SER A 13 SER A 22 -1 O GLY A 14 N PHE A 34 SHEET 3 AA 6 HIS A 1 LEU A 9 -1 O VAL A 4 N GLY A 19 SHEET 4 AA 6 TYR A 67 ASP A 75 1 O LYS A 68 N ALA A 3 SHEET 5 AA 6 PRO A 225 VAL A 227 1 O PRO A 225 N ILE A 72 SHEET 6 AA 6 VAL A 211 ARG A 214 -1 N LEU A 212 O VAL A 226 SHEET 1 AB 2 ILE A 39 VAL A 41 0 SHEET 2 AB 2 HIS A 44 SER A 46 -1 O HIS A 44 N VAL A 41 SHEET 1 AC 2 PHE A 81 ASP A 85 0 SHEET 2 AC 2 THR A 149 LEU A 154 -1 N ASN A 150 O ILE A 84 SHEET 1 AD 2 THR A 169 GLU A 170 0 SHEET 2 AD 2 ILE A 205 VAL A 206 1 N VAL A 206 O THR A 169 SHEET 1 AE 2 PHE A 180 ASP A 181 0 SHEET 2 AE 2 ASN A 186 TRP A 187 -1 O ASN A 186 N ASP A 181 SHEET 1 AF 7 PHE A 276 VAL A 280 0 SHEET 2 AF 7 ILE A 286 ASN A 291 -1 O THR A 287 N GLU A 279 SHEET 3 AF 7 LEU A 257 LEU A 262 -1 O VAL A 258 N LYS A 290 SHEET 4 AF 7 SER A 247 SER A 251 -1 O PHE A 249 N GLY A 259 SHEET 5 AF 7 ARG A 395 VAL A 398 1 O ARG A 395 N LEU A 248 SHEET 6 AF 7 GLU A 419 THR A 422 1 O GLU A 419 N ILE A 396 SHEET 7 AF 7 GLU A 460 TYR A 462 -1 O GLU A 460 N THR A 422 SHEET 1 BA 6 LYS B 25 SER B 35 0 SHEET 2 BA 6 SER B 13 SER B 22 -1 O GLY B 14 N PHE B 34 SHEET 3 BA 6 GLU B 2 LEU B 9 -1 O VAL B 4 N GLY B 19 SHEET 4 BA 6 LYS B 68 THR B 76 1 O LYS B 68 N ALA B 3 SHEET 5 BA 6 PRO B 225 ASN B 228 1 O PRO B 225 N ILE B 72 SHEET 6 BA 6 ASN B 210 ARG B 214 -1 O ASN B 210 N ASN B 228 SHEET 1 BB 2 ILE B 39 VAL B 41 0 SHEET 2 BB 2 HIS B 44 SER B 46 -1 O HIS B 44 N VAL B 41 SHEET 1 BC 3 LEU B 90 LEU B 92 0 SHEET 2 BC 3 PHE B 81 ASP B 85 -1 O LEU B 83 N LEU B 91 SHEET 3 BC 3 THR B 149 LEU B 154 -1 N ASN B 150 O ILE B 84 SHEET 1 BD 2 THR B 169 GLU B 170 0 SHEET 2 BD 2 ILE B 205 VAL B 206 1 N VAL B 206 O THR B 169 SHEET 1 BE 2 PHE B 180 ASP B 181 0 SHEET 2 BE 2 ASN B 186 TRP B 187 -1 O ASN B 186 N ASP B 181 SHEET 1 BF 7 THR B 277 VAL B 280 0 SHEET 2 BF 7 ILE B 286 ASN B 291 -1 O THR B 287 N GLU B 279 SHEET 3 BF 7 LEU B 257 LEU B 262 -1 O VAL B 258 N LYS B 290 SHEET 4 BF 7 SER B 247 SER B 251 -1 O PHE B 249 N GLY B 259 SHEET 5 BF 7 ARG B 395 VAL B 398 1 O ARG B 395 N LEU B 248 SHEET 6 BF 7 GLU B 419 THR B 422 1 O GLU B 419 N ILE B 396 SHEET 7 BF 7 GLU B 460 TYR B 462 -1 O GLU B 460 N THR B 422 SITE 1 AC1 5 THR B 244 GLU B 245 GLY B 246 ARG B 395 SITE 2 AC1 5 HOH B2161 CRYST1 60.624 60.624 280.013 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003571 0.00000