HEADER LIGASE 10-SEP-13 4C5B TITLE THE X-RAY CRYSTAL STRUCTURE OF D-ALANYL-D-ALANINE LIGASE IN COMPLEX TITLE 2 WITH ATP AND D-ALA-D-ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALA-D-ALA LIGASE, D-ALANYLALANINE SYNTHETASE, D-ALANYL-D- COMPND 5 ALANINE LIGASE; COMPND 6 EC: 6.3.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR-ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPROEX KEYWDS LIGASE, DDLB EXPDTA X-RAY DIFFRACTION AUTHOR S.BATSON,V.MAJCE,A.J.LLOYD,D.REA,C.W.G.FISHWICK,K.J.SIMMONS,V.FULOP, AUTHOR 2 D.I.ROPER REVDAT 3 20-DEC-23 4C5B 1 REMARK LINK REVDAT 2 24-JAN-18 4C5B 1 JRNL REVDAT 1 21-JAN-15 4C5B 0 JRNL AUTH S.BATSON,C.DE CHIARA,V.MAJCE,A.J.LLOYD,S.GOBEC,D.REA, JRNL AUTH 2 V.FULOP,C.W.THOROUGHGOOD,K.J.SIMMONS,C.G.DOWSON, JRNL AUTH 3 C.W.G.FISHWICK,L.P.S.DE CARVALHO,D.I.ROPER JRNL TITL INHIBITION OF D-ALA:D-ALA LIGASE THROUGH A PHOSPHORYLATED JRNL TITL 2 FORM OF THE ANTIBIOTIC D-CYCLOSERINE. JRNL REF NAT COMMUN V. 8 1939 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29208891 JRNL DOI 10.1038/S41467-017-02118-7 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 87714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3729 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 766 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.445 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4791 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6491 ; 1.571 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 5.835 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;35.301 ;24.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;13.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3535 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3050 ; 0.908 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4844 ; 1.644 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1741 ; 2.729 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1647 ; 4.233 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2290 39.8760 50.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0111 REMARK 3 T33: 0.0865 T12: -0.0029 REMARK 3 T13: 0.0035 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.4075 L22: 0.4582 REMARK 3 L33: 0.5676 L12: 0.1004 REMARK 3 L13: 0.2338 L23: 0.1048 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.0506 S13: 0.0740 REMARK 3 S21: -0.0605 S22: 0.0115 S23: 0.0218 REMARK 3 S31: -0.0648 S32: 0.0403 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0970 31.6890 69.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.0108 T22: 0.0278 REMARK 3 T33: 0.0829 T12: 0.0006 REMARK 3 T13: -0.0051 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.0665 L22: 0.6890 REMARK 3 L33: 1.0452 L12: -0.2664 REMARK 3 L13: -0.0671 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.1056 S13: 0.0794 REMARK 3 S21: 0.0435 S22: 0.0326 S23: -0.0654 REMARK 3 S31: 0.0104 S32: 0.1047 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2940 32.6420 66.5000 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0236 REMARK 3 T33: 0.0779 T12: -0.0017 REMARK 3 T13: 0.0169 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6989 L22: 0.3307 REMARK 3 L33: 0.5298 L12: 0.0519 REMARK 3 L13: 0.0337 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.0944 S13: 0.0022 REMARK 3 S21: 0.0250 S22: -0.0091 S23: 0.0495 REMARK 3 S31: 0.0027 S32: -0.0511 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0270 57.9740 49.4600 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0216 REMARK 3 T33: 0.1080 T12: -0.0044 REMARK 3 T13: 0.0066 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.4580 L22: 0.4787 REMARK 3 L33: 0.9437 L12: 0.1644 REMARK 3 L13: -0.2003 L23: -0.1152 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: 0.0821 S13: -0.0801 REMARK 3 S21: -0.0358 S22: 0.0221 S23: -0.0900 REMARK 3 S31: 0.0063 S32: -0.0466 S33: -0.0147 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 179 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8190 66.1510 71.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0483 REMARK 3 T33: 0.0701 T12: -0.0183 REMARK 3 T13: 0.0148 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.9966 L22: 0.7786 REMARK 3 L33: 0.2826 L12: 0.4811 REMARK 3 L13: 0.4082 L23: 0.3055 REMARK 3 S TENSOR REMARK 3 S11: 0.1443 S12: -0.3048 S13: 0.0587 REMARK 3 S21: 0.0973 S22: -0.1205 S23: 0.0571 REMARK 3 S31: 0.0192 S32: -0.0930 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 180 B 306 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4130 65.2550 65.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0118 REMARK 3 T33: 0.1231 T12: -0.0098 REMARK 3 T13: -0.0277 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.5465 L22: 0.3893 REMARK 3 L33: 0.7206 L12: 0.2233 REMARK 3 L13: -0.0552 L23: 0.1869 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.0101 S13: -0.0176 REMARK 3 S21: 0.0886 S22: 0.0010 S23: -0.1419 REMARK 3 S31: 0.0069 S32: 0.0314 S33: -0.0422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4C5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IOW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 SER A -22 REMARK 465 TYR A -21 REMARK 465 TYR A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 ASP A -13 REMARK 465 TYR A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 ASN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET B -23 REMARK 465 SER B -22 REMARK 465 TYR B -21 REMARK 465 TYR B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 ASP B -13 REMARK 465 TYR B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 ASN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2010 O HOH B 2020 2.11 REMARK 500 NH1 ARG B 168 O HOH B 2230 2.11 REMARK 500 O1 GOL A 1315 O HOH A 2051 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3 GOL A 1315 O HOH A 2388 4556 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2045 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A2085 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2125 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A2177 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B2361 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD2 REMARK 620 2 GLU A 270 OE2 85.7 REMARK 620 3 ADP A 310 O2B 176.1 94.5 REMARK 620 4 ADP A 310 O1A 99.4 91.1 84.5 REMARK 620 5 CO3 A 313 O3 92.6 89.8 83.5 168.0 REMARK 620 6 HOH A2326 O 89.0 174.5 90.6 91.3 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE2 REMARK 620 2 GLU A 270 OE1 60.6 REMARK 620 3 ASN A 272 OD1 91.7 85.8 REMARK 620 4 ADP A 310 O1B 86.6 86.6 172.0 REMARK 620 5 CO3 A 313 O2 102.7 162.7 90.2 97.7 REMARK 620 6 HOH A2254 O 153.4 92.8 86.4 91.7 103.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 257 OD2 REMARK 620 2 GLU B 270 OE2 85.8 REMARK 620 3 ADP B 310 O1B 172.7 92.9 REMARK 620 4 ADP B 310 O1A 103.6 93.2 83.6 REMARK 620 5 CO3 B 313 O3 91.1 88.4 81.7 165.3 REMARK 620 6 HOH B2278 O 89.1 173.9 91.8 91.2 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 270 OE2 REMARK 620 2 GLU B 270 OE1 60.7 REMARK 620 3 ASN B 272 OD1 90.0 84.1 REMARK 620 4 ADP B 310 O3B 86.6 87.3 171.3 REMARK 620 5 CO3 B 313 O2 101.2 161.4 92.5 95.9 REMARK 620 6 HOH B2198 O 154.1 93.4 86.3 93.3 104.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 280 NE2 REMARK 620 2 HOH B2281 O 88.1 REMARK 620 3 HOH B2285 O 87.8 89.8 REMARK 620 4 HOH B2334 O 90.9 92.9 177.0 REMARK 620 5 HOH B2336 O 84.9 172.9 88.6 88.6 REMARK 620 6 HOH B2357 O 176.2 92.7 88.5 92.7 94.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2224 O REMARK 620 2 HOH B2225 O 87.2 REMARK 620 3 HOH B2358 O 101.4 90.2 REMARK 620 4 HOH B2359 O 99.1 172.8 91.9 REMARK 620 5 HOH B2360 O 88.4 93.7 169.7 83.2 REMARK 620 6 HOH B2361 O 173.2 96.4 84.4 76.9 85.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide DAL A 311 and DAL A REMARK 800 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide DAL B 311 and DAL B REMARK 800 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C5A RELATED DB: PDB REMARK 900 THE X-RAY CRYSTAL STRUCTURES OF D-ALANYL-D-ALANINE LIGASE IN REMARK 900 COMPLEX ADP AND D-CYCLOSERINE PHOSPHATE REMARK 900 RELATED ID: 4C5C RELATED DB: PDB REMARK 900 THE X-RAY CRYSTAL STRUCTURE OF D-ALANYL-D-ALANINE LIGASE IN COMPLEX REMARK 900 WITH ADP AND D-ALA-D-ALA DBREF 4C5B A 1 306 UNP C4ZRI7 C4ZRI7_ECOBW 1 306 DBREF 4C5B B 1 306 UNP C4ZRI7 C4ZRI7_ECOBW 1 306 SEQADV 4C5B MET A -23 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B SER A -22 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR A -21 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR A -20 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS A -19 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS A -18 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS A -17 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS A -16 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS A -15 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS A -14 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ASP A -13 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR A -12 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ILE A -11 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B PRO A -10 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B THR A -9 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B THR A -8 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B GLU A -7 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ASN A -6 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B LEU A -5 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR A -4 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B PHE A -3 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ASN A -2 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B GLY A -1 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ALA A 0 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B MET B -23 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B SER B -22 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR B -21 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR B -20 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS B -19 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS B -18 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS B -17 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS B -16 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS B -15 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B HIS B -14 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ASP B -13 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR B -12 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ILE B -11 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B PRO B -10 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B THR B -9 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B THR B -8 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B GLU B -7 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ASN B -6 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B LEU B -5 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B TYR B -4 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B PHE B -3 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ASN B -2 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B GLY B -1 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5B ALA B 0 UNP C4ZRI7 EXPRESSION TAG SEQRES 1 A 330 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ILE SEQRES 2 A 330 PRO THR THR GLU ASN LEU TYR PHE ASN GLY ALA MET THR SEQRES 3 A 330 ASP LYS ILE ALA VAL LEU LEU GLY GLY THR SER ALA GLU SEQRES 4 A 330 ARG GLU VAL SER LEU ASN SER GLY ALA ALA VAL LEU ALA SEQRES 5 A 330 GLY LEU ARG GLU GLY GLY ILE ASP ALA TYR PRO VAL ASP SEQRES 6 A 330 PRO LYS GLU VAL ASP VAL THR GLN LEU LYS SER MET GLY SEQRES 7 A 330 PHE GLN LYS VAL PHE ILE ALA LEU HIS GLY ARG GLY GLY SEQRES 8 A 330 GLU ASP GLY THR LEU GLN GLY MET LEU GLU LEU MET GLY SEQRES 9 A 330 LEU PRO TYR THR GLY SER GLY VAL MET ALA SER ALA LEU SEQRES 10 A 330 SER MET ASP LYS LEU ARG SER LYS LEU LEU TRP GLN GLY SEQRES 11 A 330 ALA GLY LEU PRO VAL ALA PRO TRP VAL ALA LEU THR ARG SEQRES 12 A 330 ALA GLU PHE GLU LYS GLY LEU SER ASP LYS GLN LEU ALA SEQRES 13 A 330 GLU ILE SER ALA LEU GLY LEU PRO VAL ILE VAL LYS PRO SEQRES 14 A 330 SER ARG GLU GLY SER SER VAL GLY MET SER LYS VAL VAL SEQRES 15 A 330 ALA GLU ASN ALA LEU GLN ASP ALA LEU ARG LEU ALA PHE SEQRES 16 A 330 GLN HIS ASP GLU GLU VAL LEU ILE GLU LYS TRP LEU SER SEQRES 17 A 330 GLY PRO GLU PHE THR VAL ALA ILE LEU GLY GLU GLU ILE SEQRES 18 A 330 LEU PRO SER ILE ARG ILE GLN PRO SER GLY THR PHE TYR SEQRES 19 A 330 ASP TYR GLU ALA LYS TYR LEU SER ASP GLU THR GLN TYR SEQRES 20 A 330 PHE CYS PRO ALA GLY LEU GLU ALA SER GLN GLU ALA ASN SEQRES 21 A 330 LEU GLN ALA LEU VAL LEU LYS ALA TRP THR THR LEU GLY SEQRES 22 A 330 CYS LYS GLY TRP GLY ARG ILE ASP VAL MET LEU ASP SER SEQRES 23 A 330 ASP GLY GLN PHE TYR LEU LEU GLU ALA ASN THR SER PRO SEQRES 24 A 330 GLY MET THR SER HIS SER LEU VAL PRO MET ALA ALA ARG SEQRES 25 A 330 GLN ALA GLY MET SER PHE SER GLN LEU VAL VAL ARG ILE SEQRES 26 A 330 LEU GLU LEU ALA ASP SEQRES 1 B 330 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ILE SEQRES 2 B 330 PRO THR THR GLU ASN LEU TYR PHE ASN GLY ALA MET THR SEQRES 3 B 330 ASP LYS ILE ALA VAL LEU LEU GLY GLY THR SER ALA GLU SEQRES 4 B 330 ARG GLU VAL SER LEU ASN SER GLY ALA ALA VAL LEU ALA SEQRES 5 B 330 GLY LEU ARG GLU GLY GLY ILE ASP ALA TYR PRO VAL ASP SEQRES 6 B 330 PRO LYS GLU VAL ASP VAL THR GLN LEU LYS SER MET GLY SEQRES 7 B 330 PHE GLN LYS VAL PHE ILE ALA LEU HIS GLY ARG GLY GLY SEQRES 8 B 330 GLU ASP GLY THR LEU GLN GLY MET LEU GLU LEU MET GLY SEQRES 9 B 330 LEU PRO TYR THR GLY SER GLY VAL MET ALA SER ALA LEU SEQRES 10 B 330 SER MET ASP LYS LEU ARG SER LYS LEU LEU TRP GLN GLY SEQRES 11 B 330 ALA GLY LEU PRO VAL ALA PRO TRP VAL ALA LEU THR ARG SEQRES 12 B 330 ALA GLU PHE GLU LYS GLY LEU SER ASP LYS GLN LEU ALA SEQRES 13 B 330 GLU ILE SER ALA LEU GLY LEU PRO VAL ILE VAL LYS PRO SEQRES 14 B 330 SER ARG GLU GLY SER SER VAL GLY MET SER LYS VAL VAL SEQRES 15 B 330 ALA GLU ASN ALA LEU GLN ASP ALA LEU ARG LEU ALA PHE SEQRES 16 B 330 GLN HIS ASP GLU GLU VAL LEU ILE GLU LYS TRP LEU SER SEQRES 17 B 330 GLY PRO GLU PHE THR VAL ALA ILE LEU GLY GLU GLU ILE SEQRES 18 B 330 LEU PRO SER ILE ARG ILE GLN PRO SER GLY THR PHE TYR SEQRES 19 B 330 ASP TYR GLU ALA LYS TYR LEU SER ASP GLU THR GLN TYR SEQRES 20 B 330 PHE CYS PRO ALA GLY LEU GLU ALA SER GLN GLU ALA ASN SEQRES 21 B 330 LEU GLN ALA LEU VAL LEU LYS ALA TRP THR THR LEU GLY SEQRES 22 B 330 CYS LYS GLY TRP GLY ARG ILE ASP VAL MET LEU ASP SER SEQRES 23 B 330 ASP GLY GLN PHE TYR LEU LEU GLU ALA ASN THR SER PRO SEQRES 24 B 330 GLY MET THR SER HIS SER LEU VAL PRO MET ALA ALA ARG SEQRES 25 B 330 GLN ALA GLY MET SER PHE SER GLN LEU VAL VAL ARG ILE SEQRES 26 B 330 LEU GLU LEU ALA ASP HET ADP A 310 27 HET DAL A 311 5 HET DAL A 312 6 HET CO3 A 313 4 HET MG A1313 1 HET MG A1314 1 HET GOL A1315 6 HET GOL A1316 6 HET IMD A1317 5 HET ADP B 310 27 HET DAL B 311 5 HET DAL B 312 6 HET CO3 B 313 4 HET MG B1307 1 HET MG B1308 1 HET MG B1309 1 HET MG B1310 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM DAL D-ALANINE HETNAM CO3 CARBONATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 DAL 4(C3 H7 N O2) FORMUL 6 CO3 2(C O3 2-) FORMUL 7 MG 6(MG 2+) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 IMD C3 H5 N2 1+ FORMUL 20 HOH *766(H2 O) HELIX 1 1 GLU A 15 GLY A 33 1 19 HELIX 2 2 ASP A 46 LEU A 50 5 5 HELIX 3 3 GLY A 70 GLY A 80 1 11 HELIX 4 4 GLY A 87 ASP A 96 1 10 HELIX 5 5 ASP A 96 ALA A 107 1 12 HELIX 6 6 ARG A 119 LYS A 124 1 6 HELIX 7 7 SER A 127 GLY A 138 1 12 HELIX 8 8 ALA A 159 ASN A 161 5 3 HELIX 9 9 ALA A 162 GLN A 172 1 11 HELIX 10 10 ASP A 211 LEU A 217 1 7 HELIX 11 11 GLU A 230 GLY A 249 1 20 HELIX 12 12 SER A 281 ALA A 290 1 10 HELIX 13 13 SER A 293 LEU A 304 1 12 HELIX 14 14 GLU B 15 GLY B 33 1 19 HELIX 15 15 ASP B 46 LEU B 50 5 5 HELIX 16 16 GLY B 70 GLY B 80 1 11 HELIX 17 17 GLY B 87 ASP B 96 1 10 HELIX 18 18 ASP B 96 ALA B 107 1 12 HELIX 19 19 ARG B 119 GLY B 125 1 7 HELIX 20 20 SER B 127 ALA B 136 1 10 HELIX 21 21 ALA B 159 ASN B 161 5 3 HELIX 22 22 ALA B 162 PHE B 171 1 10 HELIX 23 23 ASP B 211 LEU B 217 1 7 HELIX 24 24 GLU B 230 GLY B 249 1 20 HELIX 25 25 SER B 281 ALA B 290 1 10 HELIX 26 26 SER B 293 LEU B 304 1 12 SHEET 1 AA 3 ASP A 36 VAL A 40 0 SHEET 2 AA 3 LYS A 4 LEU A 8 1 O ILE A 5 N TYR A 38 SHEET 3 AA 3 LYS A 57 ILE A 60 1 O LYS A 57 N ALA A 6 SHEET 1 AB 4 TRP A 114 THR A 118 0 SHEET 2 AB 4 GLU A 176 LYS A 181 -1 O VAL A 177 N LEU A 117 SHEET 3 AB 4 VAL A 141 PRO A 145 -1 O ILE A 142 N GLU A 180 SHEET 4 AB 4 SER A 155 VAL A 157 -1 O SER A 155 N VAL A 143 SHEET 1 AC 2 GLU A 196 ILE A 197 0 SHEET 2 AC 2 GLU A 187 LEU A 193 -1 O LEU A 193 N GLU A 196 SHEET 1 AD 4 GLN A 222 PHE A 224 0 SHEET 2 AD 4 ILE A 201 GLN A 204 -1 O ARG A 202 N PHE A 224 SHEET 3 AD 4 GLU A 187 LEU A 193 -1 O GLU A 187 N ILE A 203 SHEET 4 AD 4 GLU A 196 ILE A 197 -1 O GLU A 196 N LEU A 193 SHEET 1 AE 5 GLN A 222 PHE A 224 0 SHEET 2 AE 5 ILE A 201 GLN A 204 -1 O ARG A 202 N PHE A 224 SHEET 3 AE 5 GLU A 187 LEU A 193 -1 O GLU A 187 N ILE A 203 SHEET 4 AE 5 TRP A 253 LEU A 260 -1 O GLY A 254 N ILE A 192 SHEET 5 AE 5 PHE A 266 ASN A 272 -1 O TYR A 267 N MET A 259 SHEET 1 BA 3 ASP B 36 VAL B 40 0 SHEET 2 BA 3 LYS B 4 LEU B 8 1 O ILE B 5 N TYR B 38 SHEET 3 BA 3 LYS B 57 ILE B 60 1 O LYS B 57 N ALA B 6 SHEET 1 BB 4 TRP B 114 THR B 118 0 SHEET 2 BB 4 GLU B 176 LYS B 181 -1 O VAL B 177 N LEU B 117 SHEET 3 BB 4 VAL B 141 PRO B 145 -1 O ILE B 142 N GLU B 180 SHEET 4 BB 4 SER B 155 VAL B 157 -1 O SER B 155 N VAL B 143 SHEET 1 BC 2 GLU B 196 ILE B 197 0 SHEET 2 BC 2 GLU B 187 LEU B 193 -1 O LEU B 193 N GLU B 196 SHEET 1 BD 4 GLN B 222 PHE B 224 0 SHEET 2 BD 4 ILE B 201 GLN B 204 -1 O ARG B 202 N PHE B 224 SHEET 3 BD 4 GLU B 187 LEU B 193 -1 O GLU B 187 N ILE B 203 SHEET 4 BD 4 GLU B 196 ILE B 197 -1 O GLU B 196 N LEU B 193 SHEET 1 BE 5 GLN B 222 PHE B 224 0 SHEET 2 BE 5 ILE B 201 GLN B 204 -1 O ARG B 202 N PHE B 224 SHEET 3 BE 5 GLU B 187 LEU B 193 -1 O GLU B 187 N ILE B 203 SHEET 4 BE 5 TRP B 253 LEU B 260 -1 O GLY B 254 N ILE B 192 SHEET 5 BE 5 PHE B 266 ASN B 272 -1 O TYR B 267 N MET B 259 LINK C DAL A 311 N DAL A 312 1555 1555 1.33 LINK C DAL B 311 N DAL B 312 1555 1555 1.33 LINK OD2 ASP A 257 MG MG A1314 1555 1555 2.08 LINK OE2 GLU A 270 MG MG A1313 1555 1555 2.17 LINK OE1 GLU A 270 MG MG A1313 1555 1555 2.25 LINK OE2 GLU A 270 MG MG A1314 1555 1555 2.13 LINK OD1 ASN A 272 MG MG A1313 1555 1555 2.15 LINK O1B ADP A 310 MG MG A1313 1555 1555 2.07 LINK O2B ADP A 310 MG MG A1314 1555 1555 2.03 LINK O1A ADP A 310 MG MG A1314 1555 1555 2.06 LINK O2 CO3 A 313 MG MG A1313 1555 1555 1.98 LINK O3 CO3 A 313 MG MG A1314 1555 1555 2.10 LINK MG MG A1313 O HOH A2254 1555 1555 2.06 LINK MG MG A1314 O HOH A2326 1555 1555 2.13 LINK OD2 ASP B 257 MG MG B1308 1555 1555 2.02 LINK OE2 GLU B 270 MG MG B1307 1555 1555 2.18 LINK OE1 GLU B 270 MG MG B1307 1555 1555 2.26 LINK OE2 GLU B 270 MG MG B1308 1555 1555 2.10 LINK OD1 ASN B 272 MG MG B1307 1555 1555 2.12 LINK NE2 HIS B 280 MG MG B1309 1555 1555 2.27 LINK O3B ADP B 310 MG MG B1307 1555 1555 2.03 LINK O1B ADP B 310 MG MG B1308 1555 1555 2.12 LINK O1A ADP B 310 MG MG B1308 1555 1555 1.99 LINK O2 CO3 B 313 MG MG B1307 1555 1555 1.95 LINK O3 CO3 B 313 MG MG B1308 1555 1555 2.12 LINK MG MG B1307 O HOH B2198 1555 1555 2.09 LINK MG MG B1308 O HOH B2278 1555 1555 2.11 LINK MG MG B1309 O HOH B2281 1555 1555 2.16 LINK MG MG B1309 O HOH B2285 1555 1555 2.15 LINK MG MG B1309 O HOH B2334 1555 1555 2.07 LINK MG MG B1309 O HOH B2336 1555 1555 2.00 LINK MG MG B1309 O HOH B2357 1555 1555 1.98 LINK MG MG B1310 O HOH B2224 1555 1555 2.09 LINK MG MG B1310 O HOH B2225 1555 1555 2.01 LINK MG MG B1310 O HOH B2358 1555 1555 2.01 LINK MG MG B1310 O HOH B2359 1555 1555 2.07 LINK MG MG B1310 O HOH B2360 1555 1555 2.17 LINK MG MG B1310 O HOH B2361 1555 1555 2.27 CISPEP 1 LEU A 139 PRO A 140 0 -1.93 CISPEP 2 GLY A 185 PRO A 186 0 6.26 CISPEP 3 CYS A 225 PRO A 226 0 4.15 CISPEP 4 LEU B 139 PRO B 140 0 -1.39 CISPEP 5 GLY B 185 PRO B 186 0 5.64 CISPEP 6 CYS B 225 PRO B 226 0 1.44 SITE 1 AC1 27 LYS A 97 ILE A 142 LYS A 144 GLU A 148 SITE 2 AC1 27 GLY A 149 SER A 150 SER A 151 MET A 154 SITE 3 AC1 27 GLU A 180 LYS A 181 TRP A 182 LEU A 183 SITE 4 AC1 27 GLU A 187 PHE A 209 TYR A 210 LYS A 215 SITE 5 AC1 27 ASP A 257 MET A 259 LEU A 269 GLU A 270 SITE 6 AC1 27 CO3 A 313 MG A1313 MG A1314 HOH A2254 SITE 7 AC1 27 HOH A2256 HOH A2326 HOH A2404 SITE 1 AC2 13 GLY A 149 SER A 150 LYS A 215 ARG A 255 SITE 2 AC2 13 ASP A 257 GLU A 270 ASN A 272 ADP A 310 SITE 3 AC2 13 DAL A 311 DAL A 312 MG A1313 MG A1314 SITE 4 AC2 13 HOH A2326 SITE 1 AC3 6 GLU A 270 ASN A 272 ADP A 310 CO3 A 313 SITE 2 AC3 6 MG A1314 HOH A2254 SITE 1 AC4 6 ASP A 257 GLU A 270 ADP A 310 CO3 A 313 SITE 2 AC4 6 MG A1313 HOH A2326 SITE 1 AC5 7 GLU A 17 VAL A 18 TYR A 212 LEU A 217 SITE 2 AC5 7 ARG A 288 HOH A2051 HOH A2388 SITE 1 AC6 8 PRO A 39 ASP A 41 GLN A 164 ASP A 165 SITE 2 AC6 8 ARG A 168 HOH A2081 HOH A2276 HOH A2405 SITE 1 AC7 6 LYS A 215 TYR A 216 HIS A 280 HOH A2281 SITE 2 AC7 6 HOH A2324 HOH A2374 SITE 1 AC8 26 LYS B 97 ILE B 142 LYS B 144 GLU B 148 SITE 2 AC8 26 GLY B 149 SER B 150 SER B 151 MET B 154 SITE 3 AC8 26 GLU B 180 LYS B 181 TRP B 182 LEU B 183 SITE 4 AC8 26 GLU B 187 PHE B 209 TYR B 210 LYS B 215 SITE 5 AC8 26 ASP B 257 MET B 259 GLU B 270 CO3 B 313 SITE 6 AC8 26 MG B1307 MG B1308 HOH B2198 HOH B2200 SITE 7 AC8 26 HOH B2278 HOH B2356 SITE 1 AC9 12 SER B 150 LYS B 215 ARG B 255 ASP B 257 SITE 2 AC9 12 GLU B 270 ASN B 272 ADP B 310 DAL B 311 SITE 3 AC9 12 DAL B 312 MG B1307 MG B1308 HOH B2278 SITE 1 BC1 6 GLU B 270 ASN B 272 ADP B 310 CO3 B 313 SITE 2 BC1 6 MG B1308 HOH B2198 SITE 1 BC2 6 ASP B 257 GLU B 270 ADP B 310 CO3 B 313 SITE 2 BC2 6 MG B1307 HOH B2278 SITE 1 BC3 6 HOH B2224 HOH B2225 HOH B2358 HOH B2359 SITE 2 BC3 6 HOH B2360 HOH B2361 SITE 1 BC4 6 HIS B 280 HOH B2281 HOH B2285 HOH B2334 SITE 2 BC4 6 HOH B2336 HOH B2357 SITE 1 BC5 11 GLU A 15 HIS A 63 SER A 150 TYR A 216 SITE 2 BC5 11 ARG A 255 GLY A 276 SER A 281 LEU A 282 SITE 3 BC5 11 CO3 A 313 HOH A2149 HOH A2366 SITE 1 BC6 11 GLU B 15 HIS B 63 SER B 150 TYR B 216 SITE 2 BC6 11 ARG B 255 GLY B 276 SER B 281 LEU B 282 SITE 3 BC6 11 CO3 B 313 HOH B2108 HOH B2319 CRYST1 53.000 97.620 109.490 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009133 0.00000