HEADER LIGASE 10-SEP-13 4C5C TITLE THE X-RAY CRYSTAL STRUCTURE OF D-ALANYL-D-ALANINE LIGASE IN COMPLEX TITLE 2 WITH ADP AND D-ALA-D-ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALA-D-ALA LIGASE, D-ALANYLALANINE SYNTHETASE, D-ALANYL-D- COMPND 5 ALANINE LIGASE; COMPND 6 EC: 6.3.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPROEX KEYWDS LIGASE, DDLB EXPDTA X-RAY DIFFRACTION AUTHOR S.BATSON,V.MAJCE,A.J.LLOYD,D.REA,C.W.G.FISHWICK,K.J.SIMMONS,V.FULOP, AUTHOR 2 D.I.ROPER REVDAT 3 20-DEC-23 4C5C 1 REMARK LINK REVDAT 2 24-JAN-18 4C5C 1 JRNL REVDAT 1 21-JAN-15 4C5C 0 JRNL AUTH S.BATSON,C.DE CHIARA,V.MAJCE,A.J.LLOYD,S.GOBEC,D.REA, JRNL AUTH 2 V.FULOP,C.W.THOROUGHGOOD,K.J.SIMMONS,C.G.DOWSON, JRNL AUTH 3 C.W.G.FISHWICK,L.P.S.DE CARVALHO,D.I.ROPER JRNL TITL INHIBITION OF D-ALA:D-ALA LIGASE THROUGH A PHOSPHORYLATED JRNL TITL 2 FORM OF THE ANTIBIOTIC D-CYCLOSERINE. JRNL REF NAT COMMUN V. 8 1939 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29208891 JRNL DOI 10.1038/S41467-017-02118-7 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 101827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 652 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.053 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4788 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6494 ; 1.662 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 5.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;35.785 ;24.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;12.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3522 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3044 ; 0.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4844 ; 1.602 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1744 ; 2.941 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1650 ; 4.394 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6430 39.8400 50.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.0459 REMARK 3 T33: 0.0210 T12: 0.0071 REMARK 3 T13: -0.0034 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.5999 L22: 0.5870 REMARK 3 L33: 0.9195 L12: 0.1360 REMARK 3 L13: 0.0109 L23: 0.2178 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: 0.1306 S13: 0.0483 REMARK 3 S21: -0.0762 S22: -0.0005 S23: 0.0400 REMARK 3 S31: -0.0748 S32: -0.0445 S33: 0.0156 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0170 31.2900 71.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0496 T22: 0.0680 REMARK 3 T33: 0.0408 T12: -0.0021 REMARK 3 T13: -0.0017 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.9777 L22: 0.2596 REMARK 3 L33: 1.1900 L12: 0.0584 REMARK 3 L13: 0.4645 L23: 0.1494 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.1705 S13: -0.0700 REMARK 3 S21: 0.0606 S22: 0.0157 S23: -0.0296 REMARK 3 S31: 0.0279 S32: 0.1100 S33: -0.0637 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9540 32.7190 65.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0353 REMARK 3 T33: 0.0299 T12: -0.0050 REMARK 3 T13: 0.0149 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.6931 L22: 0.4501 REMARK 3 L33: 0.6235 L12: 0.1458 REMARK 3 L13: -0.0425 L23: -0.0345 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0258 S13: -0.0335 REMARK 3 S21: 0.0415 S22: -0.0224 S23: 0.0842 REMARK 3 S31: -0.0112 S32: -0.0642 S33: 0.0162 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0940 58.1500 50.3880 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: 0.0417 REMARK 3 T33: 0.0387 T12: -0.0032 REMARK 3 T13: 0.0037 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.7372 L22: 0.9028 REMARK 3 L33: 0.4625 L12: 0.3340 REMARK 3 L13: -0.0418 L23: -0.0180 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.1461 S13: -0.0454 REMARK 3 S21: -0.1412 S22: 0.0629 S23: -0.1098 REMARK 3 S31: 0.0527 S32: 0.0053 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 179 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4350 66.5920 71.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0723 REMARK 3 T33: 0.0526 T12: -0.0042 REMARK 3 T13: -0.0067 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.8066 L22: 0.5378 REMARK 3 L33: 1.8651 L12: -0.0531 REMARK 3 L13: -0.4272 L23: -0.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.1528 S13: 0.0264 REMARK 3 S21: 0.0751 S22: 0.0103 S23: 0.0309 REMARK 3 S31: -0.0056 S32: -0.1894 S33: -0.0617 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 180 B 306 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3670 65.1730 66.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.0205 T22: 0.0185 REMARK 3 T33: 0.0616 T12: -0.0055 REMARK 3 T13: -0.0288 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.9422 L22: 0.6191 REMARK 3 L33: 0.6932 L12: 0.2795 REMARK 3 L13: 0.0778 L23: 0.0567 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.0379 S13: 0.0378 REMARK 3 S21: 0.0718 S22: -0.0078 S23: -0.1398 REMARK 3 S31: 0.0093 S32: 0.0451 S33: -0.0215 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4C5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IOW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 SER A -22 REMARK 465 TYR A -21 REMARK 465 TYR A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 ASP A -13 REMARK 465 TYR A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 ASN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET B -23 REMARK 465 SER B -22 REMARK 465 TYR B -21 REMARK 465 TYR B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 ASP B -13 REMARK 465 TYR B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 ASN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2236 O HOH A 2237 1.97 REMARK 500 O HOH A 2057 O HOH A 2158 2.04 REMARK 500 O HOH A 2057 O HOH A 2157 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2011 O HOH A 2133 4556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2001 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2107 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD2 REMARK 620 2 GLU A 270 OE2 87.9 REMARK 620 3 ATP A 310 O1A 104.6 91.9 REMARK 620 4 ATP A 310 O3B 165.9 89.1 89.3 REMARK 620 5 ATP A 310 PG 123.6 82.4 131.1 42.4 REMARK 620 6 ATP A 310 O2G 92.4 87.8 163.0 73.7 32.1 REMARK 620 7 HOH A2272 O 90.7 176.3 91.8 91.4 95.6 88.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE1 REMARK 620 2 GLU A 270 OE2 61.0 REMARK 620 3 ASN A 272 OD1 86.3 90.9 REMARK 620 4 ATP A 310 O1B 87.1 87.7 173.2 REMARK 620 5 ATP A 310 O3G 163.2 102.5 91.0 95.8 REMARK 620 6 HOH A2194 O 95.1 156.1 86.8 91.8 101.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 280 NE2 REMARK 620 2 HOH A2273 O 97.3 REMARK 620 3 HOH A2278 O 95.4 90.6 REMARK 620 4 HOH A2322 O 91.6 89.9 172.8 REMARK 620 5 HOH A2323 O 89.8 172.9 88.6 90.0 REMARK 620 6 HOH A2343 O 172.5 84.5 91.8 81.1 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 257 OD2 REMARK 620 2 GLU B 270 OE2 86.9 REMARK 620 3 ATP B 310 O1A 102.9 93.5 REMARK 620 4 ATP B 310 O3B 166.5 91.7 90.5 REMARK 620 5 ATP B 310 PG 123.2 84.1 133.5 43.3 REMARK 620 6 ATP B 310 O2G 91.9 89.4 165.1 74.7 32.3 REMARK 620 7 HOH B2236 O 89.8 175.2 90.6 90.7 94.8 87.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 270 OE2 REMARK 620 2 GLU B 270 OE1 60.7 REMARK 620 3 ASN B 272 OD1 90.6 86.3 REMARK 620 4 ATP B 310 O1B 86.5 86.8 173.0 REMARK 620 5 ATP B 310 O3G 102.9 163.2 90.5 96.4 REMARK 620 6 HOH B2165 O 155.0 94.4 86.3 93.6 101.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 280 NE2 REMARK 620 2 HOH B2238 O 94.1 REMARK 620 3 HOH B2240 O 99.0 91.4 REMARK 620 4 HOH B2241 O 89.6 175.4 85.4 REMARK 620 5 HOH B2286 O 92.2 87.7 168.7 94.8 REMARK 620 6 HOH B2306 O 173.1 79.6 84.1 96.7 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2181 O REMARK 620 2 HOH B2182 O 77.7 REMARK 620 3 HOH B2186 O 70.0 146.8 REMARK 620 4 HOH B2187 O 97.5 94.3 82.4 REMARK 620 5 HOH B2307 O 171.4 96.6 116.4 89.3 REMARK 620 6 HOH B2308 O 83.8 89.6 94.6 176.1 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide DAL A 311 and DAL A REMARK 800 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide DAL B 311 and DAL B REMARK 800 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C5A RELATED DB: PDB REMARK 900 THE X-RAY CRYSTAL STRUCTURES OF D-ALANYL-D-ALANINE LIGASE IN REMARK 900 COMPLEX ADP AND D-CYCLOSERINE PHOSPHATE REMARK 900 RELATED ID: 4C5B RELATED DB: PDB REMARK 900 THE X-RAY CRYSTAL STRUCTURE OF D-ALANYL-D-ALANINE LIGASE IN COMPLEX REMARK 900 WITH ATP AND D-ALA-D-ALA DBREF 4C5C A 1 306 UNP C4ZRI7 C4ZRI7_ECOBW 1 306 DBREF 4C5C B 1 306 UNP C4ZRI7 C4ZRI7_ECOBW 1 306 SEQADV 4C5C MET A -23 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C SER A -22 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR A -21 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR A -20 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS A -19 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS A -18 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS A -17 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS A -16 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS A -15 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS A -14 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ASP A -13 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR A -12 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ILE A -11 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C PRO A -10 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C THR A -9 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C THR A -8 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C GLU A -7 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ASN A -6 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C LEU A -5 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR A -4 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C PHE A -3 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ASN A -2 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C GLY A -1 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ALA A 0 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C MET B -23 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C SER B -22 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR B -21 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR B -20 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS B -19 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS B -18 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS B -17 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS B -16 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS B -15 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C HIS B -14 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ASP B -13 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR B -12 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ILE B -11 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C PRO B -10 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C THR B -9 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C THR B -8 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C GLU B -7 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ASN B -6 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C LEU B -5 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C TYR B -4 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C PHE B -3 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ASN B -2 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C GLY B -1 UNP C4ZRI7 EXPRESSION TAG SEQADV 4C5C ALA B 0 UNP C4ZRI7 EXPRESSION TAG SEQRES 1 A 330 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ILE SEQRES 2 A 330 PRO THR THR GLU ASN LEU TYR PHE ASN GLY ALA MET THR SEQRES 3 A 330 ASP LYS ILE ALA VAL LEU LEU GLY GLY THR SER ALA GLU SEQRES 4 A 330 ARG GLU VAL SER LEU ASN SER GLY ALA ALA VAL LEU ALA SEQRES 5 A 330 GLY LEU ARG GLU GLY GLY ILE ASP ALA TYR PRO VAL ASP SEQRES 6 A 330 PRO LYS GLU VAL ASP VAL THR GLN LEU LYS SER MET GLY SEQRES 7 A 330 PHE GLN LYS VAL PHE ILE ALA LEU HIS GLY ARG GLY GLY SEQRES 8 A 330 GLU ASP GLY THR LEU GLN GLY MET LEU GLU LEU MET GLY SEQRES 9 A 330 LEU PRO TYR THR GLY SER GLY VAL MET ALA SER ALA LEU SEQRES 10 A 330 SER MET ASP LYS LEU ARG SER LYS LEU LEU TRP GLN GLY SEQRES 11 A 330 ALA GLY LEU PRO VAL ALA PRO TRP VAL ALA LEU THR ARG SEQRES 12 A 330 ALA GLU PHE GLU LYS GLY LEU SER ASP LYS GLN LEU ALA SEQRES 13 A 330 GLU ILE SER ALA LEU GLY LEU PRO VAL ILE VAL LYS PRO SEQRES 14 A 330 SER ARG GLU GLY SER SER VAL GLY MET SER LYS VAL VAL SEQRES 15 A 330 ALA GLU ASN ALA LEU GLN ASP ALA LEU ARG LEU ALA PHE SEQRES 16 A 330 GLN HIS ASP GLU GLU VAL LEU ILE GLU LYS TRP LEU SER SEQRES 17 A 330 GLY PRO GLU PHE THR VAL ALA ILE LEU GLY GLU GLU ILE SEQRES 18 A 330 LEU PRO SER ILE ARG ILE GLN PRO SER GLY THR PHE TYR SEQRES 19 A 330 ASP TYR GLU ALA LYS TYR LEU SER ASP GLU THR GLN TYR SEQRES 20 A 330 PHE CYS PRO ALA GLY LEU GLU ALA SER GLN GLU ALA ASN SEQRES 21 A 330 LEU GLN ALA LEU VAL LEU LYS ALA TRP THR THR LEU GLY SEQRES 22 A 330 CYS LYS GLY TRP GLY ARG ILE ASP VAL MET LEU ASP SER SEQRES 23 A 330 ASP GLY GLN PHE TYR LEU LEU GLU ALA ASN THR SER PRO SEQRES 24 A 330 GLY MET THR SER HIS SER LEU VAL PRO MET ALA ALA ARG SEQRES 25 A 330 GLN ALA GLY MET SER PHE SER GLN LEU VAL VAL ARG ILE SEQRES 26 A 330 LEU GLU LEU ALA ASP SEQRES 1 B 330 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ILE SEQRES 2 B 330 PRO THR THR GLU ASN LEU TYR PHE ASN GLY ALA MET THR SEQRES 3 B 330 ASP LYS ILE ALA VAL LEU LEU GLY GLY THR SER ALA GLU SEQRES 4 B 330 ARG GLU VAL SER LEU ASN SER GLY ALA ALA VAL LEU ALA SEQRES 5 B 330 GLY LEU ARG GLU GLY GLY ILE ASP ALA TYR PRO VAL ASP SEQRES 6 B 330 PRO LYS GLU VAL ASP VAL THR GLN LEU LYS SER MET GLY SEQRES 7 B 330 PHE GLN LYS VAL PHE ILE ALA LEU HIS GLY ARG GLY GLY SEQRES 8 B 330 GLU ASP GLY THR LEU GLN GLY MET LEU GLU LEU MET GLY SEQRES 9 B 330 LEU PRO TYR THR GLY SER GLY VAL MET ALA SER ALA LEU SEQRES 10 B 330 SER MET ASP LYS LEU ARG SER LYS LEU LEU TRP GLN GLY SEQRES 11 B 330 ALA GLY LEU PRO VAL ALA PRO TRP VAL ALA LEU THR ARG SEQRES 12 B 330 ALA GLU PHE GLU LYS GLY LEU SER ASP LYS GLN LEU ALA SEQRES 13 B 330 GLU ILE SER ALA LEU GLY LEU PRO VAL ILE VAL LYS PRO SEQRES 14 B 330 SER ARG GLU GLY SER SER VAL GLY MET SER LYS VAL VAL SEQRES 15 B 330 ALA GLU ASN ALA LEU GLN ASP ALA LEU ARG LEU ALA PHE SEQRES 16 B 330 GLN HIS ASP GLU GLU VAL LEU ILE GLU LYS TRP LEU SER SEQRES 17 B 330 GLY PRO GLU PHE THR VAL ALA ILE LEU GLY GLU GLU ILE SEQRES 18 B 330 LEU PRO SER ILE ARG ILE GLN PRO SER GLY THR PHE TYR SEQRES 19 B 330 ASP TYR GLU ALA LYS TYR LEU SER ASP GLU THR GLN TYR SEQRES 20 B 330 PHE CYS PRO ALA GLY LEU GLU ALA SER GLN GLU ALA ASN SEQRES 21 B 330 LEU GLN ALA LEU VAL LEU LYS ALA TRP THR THR LEU GLY SEQRES 22 B 330 CYS LYS GLY TRP GLY ARG ILE ASP VAL MET LEU ASP SER SEQRES 23 B 330 ASP GLY GLN PHE TYR LEU LEU GLU ALA ASN THR SER PRO SEQRES 24 B 330 GLY MET THR SER HIS SER LEU VAL PRO MET ALA ALA ARG SEQRES 25 B 330 GLN ALA GLY MET SER PHE SER GLN LEU VAL VAL ARG ILE SEQRES 26 B 330 LEU GLU LEU ALA ASP HET ATP A 310 31 HET DAL A 311 5 HET DAL A 312 6 HET MG A1313 1 HET MG A1314 1 HET MG A1315 1 HET GOL A1316 6 HET GOL A1317 6 HET ATP B 310 31 HET DAL B 311 5 HET DAL B 312 6 HET MG B1307 1 HET MG B1308 1 HET MG B1309 1 HET MG B1310 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM DAL D-ALANINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 DAL 4(C3 H7 N O2) FORMUL 6 MG 7(MG 2+) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 18 HOH *652(H2 O) HELIX 1 1 GLU A 15 GLY A 33 1 19 HELIX 2 2 ASP A 46 LEU A 50 5 5 HELIX 3 3 GLY A 70 GLY A 80 1 11 HELIX 4 4 GLY A 87 ASP A 96 1 10 HELIX 5 5 ASP A 96 ALA A 107 1 12 HELIX 6 6 ARG A 119 GLY A 125 1 7 HELIX 7 7 SER A 127 LEU A 137 1 11 HELIX 8 8 ALA A 159 ASN A 161 5 3 HELIX 9 9 ALA A 162 GLN A 172 1 11 HELIX 10 10 ASP A 211 LEU A 217 1 7 HELIX 11 11 GLU A 230 GLY A 249 1 20 HELIX 12 12 SER A 281 ALA A 290 1 10 HELIX 13 13 SER A 293 LEU A 304 1 12 HELIX 14 14 GLU B 15 GLY B 33 1 19 HELIX 15 15 ASP B 46 LEU B 50 5 5 HELIX 16 16 GLY B 70 GLY B 80 1 11 HELIX 17 17 GLY B 87 ASP B 96 1 10 HELIX 18 18 ASP B 96 ALA B 107 1 12 HELIX 19 19 ARG B 119 GLY B 125 1 7 HELIX 20 20 SER B 127 LEU B 137 1 11 HELIX 21 21 ALA B 159 GLN B 172 1 14 HELIX 22 22 ASP B 211 LEU B 217 1 7 HELIX 23 23 GLU B 230 GLY B 249 1 20 HELIX 24 24 SER B 281 ALA B 290 1 10 HELIX 25 25 SER B 293 LEU B 304 1 12 SHEET 1 AA 3 ASP A 36 VAL A 40 0 SHEET 2 AA 3 LYS A 4 LEU A 8 1 O ILE A 5 N TYR A 38 SHEET 3 AA 3 LYS A 57 ILE A 60 1 O LYS A 57 N ALA A 6 SHEET 1 AB 4 TRP A 114 THR A 118 0 SHEET 2 AB 4 GLU A 176 LYS A 181 -1 O VAL A 177 N LEU A 117 SHEET 3 AB 4 VAL A 141 PRO A 145 -1 O ILE A 142 N GLU A 180 SHEET 4 AB 4 SER A 155 VAL A 157 -1 O SER A 155 N VAL A 143 SHEET 1 AC 2 GLU A 196 ILE A 197 0 SHEET 2 AC 2 GLU A 187 LEU A 193 -1 O LEU A 193 N GLU A 196 SHEET 1 AD 4 GLN A 222 PHE A 224 0 SHEET 2 AD 4 ILE A 201 GLN A 204 -1 O ARG A 202 N PHE A 224 SHEET 3 AD 4 GLU A 187 LEU A 193 -1 O GLU A 187 N ILE A 203 SHEET 4 AD 4 GLU A 196 ILE A 197 -1 O GLU A 196 N LEU A 193 SHEET 1 AE 5 GLN A 222 PHE A 224 0 SHEET 2 AE 5 ILE A 201 GLN A 204 -1 O ARG A 202 N PHE A 224 SHEET 3 AE 5 GLU A 187 LEU A 193 -1 O GLU A 187 N ILE A 203 SHEET 4 AE 5 TRP A 253 LEU A 260 -1 O GLY A 254 N ILE A 192 SHEET 5 AE 5 PHE A 266 ASN A 272 -1 O TYR A 267 N MET A 259 SHEET 1 BA 3 ASP B 36 VAL B 40 0 SHEET 2 BA 3 LYS B 4 LEU B 8 1 O ILE B 5 N TYR B 38 SHEET 3 BA 3 LYS B 57 ILE B 60 1 O LYS B 57 N ALA B 6 SHEET 1 BB 4 TRP B 114 THR B 118 0 SHEET 2 BB 4 GLU B 176 LYS B 181 -1 O VAL B 177 N LEU B 117 SHEET 3 BB 4 VAL B 141 PRO B 145 -1 O ILE B 142 N GLU B 180 SHEET 4 BB 4 SER B 155 VAL B 157 -1 O SER B 155 N VAL B 143 SHEET 1 BC 2 GLU B 196 ILE B 197 0 SHEET 2 BC 2 GLU B 187 LEU B 193 -1 O LEU B 193 N GLU B 196 SHEET 1 BD 4 GLN B 222 PHE B 224 0 SHEET 2 BD 4 ILE B 201 GLN B 204 -1 O ARG B 202 N PHE B 224 SHEET 3 BD 4 GLU B 187 LEU B 193 -1 O GLU B 187 N ILE B 203 SHEET 4 BD 4 GLU B 196 ILE B 197 -1 O GLU B 196 N LEU B 193 SHEET 1 BE 5 GLN B 222 PHE B 224 0 SHEET 2 BE 5 ILE B 201 GLN B 204 -1 O ARG B 202 N PHE B 224 SHEET 3 BE 5 GLU B 187 LEU B 193 -1 O GLU B 187 N ILE B 203 SHEET 4 BE 5 TRP B 253 LEU B 260 -1 O GLY B 254 N ILE B 192 SHEET 5 BE 5 PHE B 266 ASN B 272 -1 O TYR B 267 N MET B 259 LINK C DAL A 311 N DAL A 312 1555 1555 1.34 LINK C DAL B 311 N DAL B 312 1555 1555 1.33 LINK OD2 ASP A 257 MG MG A1314 1555 1555 2.05 LINK OE1 GLU A 270 MG MG A1313 1555 1555 2.20 LINK OE2 GLU A 270 MG MG A1313 1555 1555 2.13 LINK OE2 GLU A 270 MG MG A1314 1555 1555 2.13 LINK OD1 ASN A 272 MG MG A1313 1555 1555 2.16 LINK NE2 HIS A 280 MG MG A1315 1555 1555 2.17 LINK O1B ATP A 310 MG MG A1313 1555 1555 2.02 LINK O3G ATP A 310 MG MG A1313 1555 1555 1.96 LINK O1A ATP A 310 MG MG A1314 1555 1555 1.97 LINK O3B ATP A 310 MG MG A1314 1555 1555 2.19 LINK PG ATP A 310 MG MG A1314 1555 1555 2.71 LINK O2G ATP A 310 MG MG A1314 1555 1555 2.03 LINK MG MG A1313 O HOH A2194 1555 1555 2.10 LINK MG MG A1314 O HOH A2272 1555 1555 2.10 LINK MG MG A1315 O HOH A2273 1555 1555 1.92 LINK MG MG A1315 O HOH A2278 1555 1555 2.27 LINK MG MG A1315 O HOH A2322 1555 1555 1.95 LINK MG MG A1315 O HOH A2323 1555 1555 2.02 LINK MG MG A1315 O HOH A2343 1555 1555 2.21 LINK OD2 ASP B 257 MG MG B1308 1555 1555 2.11 LINK OE2 GLU B 270 MG MG B1307 1555 1555 2.19 LINK OE1 GLU B 270 MG MG B1307 1555 1555 2.23 LINK OE2 GLU B 270 MG MG B1308 1555 1555 2.08 LINK OD1 ASN B 272 MG MG B1307 1555 1555 2.16 LINK NE2 HIS B 280 MG MG B1309 1555 1555 2.15 LINK O1B ATP B 310 MG MG B1307 1555 1555 2.02 LINK O3G ATP B 310 MG MG B1307 1555 1555 1.95 LINK O1A ATP B 310 MG MG B1308 1555 1555 1.93 LINK O3B ATP B 310 MG MG B1308 1555 1555 2.11 LINK PG ATP B 310 MG MG B1308 1555 1555 2.69 LINK O2G ATP B 310 MG MG B1308 1555 1555 2.13 LINK MG MG B1307 O HOH B2165 1555 1555 2.09 LINK MG MG B1308 O HOH B2236 1555 1555 2.12 LINK MG MG B1309 O HOH B2238 1555 1555 1.99 LINK MG MG B1309 O HOH B2240 1555 1555 2.25 LINK MG MG B1309 O HOH B2241 1555 1555 1.83 LINK MG MG B1309 O HOH B2286 1555 1555 1.95 LINK MG MG B1309 O HOH B2306 1555 1555 2.31 LINK MG MG B1310 O HOH B2181 1555 1555 2.47 LINK MG MG B1310 O HOH B2182 1555 1555 2.07 LINK MG MG B1310 O HOH B2186 1555 1555 2.56 LINK MG MG B1310 O HOH B2187 1555 1555 2.30 LINK MG MG B1310 O HOH B2307 1555 1555 2.00 LINK MG MG B1310 O HOH B2308 1555 1555 1.96 CISPEP 1 LEU A 139 PRO A 140 0 -2.37 CISPEP 2 GLY A 185 PRO A 186 0 5.40 CISPEP 3 CYS A 225 PRO A 226 0 -0.59 CISPEP 4 LEU B 139 PRO B 140 0 2.73 CISPEP 5 GLY B 185 PRO B 186 0 4.31 CISPEP 6 CYS B 225 PRO B 226 0 -2.61 SITE 1 AC1 30 LYS A 97 ILE A 142 LYS A 144 GLU A 148 SITE 2 AC1 30 GLY A 149 SER A 150 SER A 151 MET A 154 SITE 3 AC1 30 GLU A 180 LYS A 181 TRP A 182 LEU A 183 SITE 4 AC1 30 GLU A 187 PHE A 209 TYR A 210 LYS A 215 SITE 5 AC1 30 ARG A 255 ASP A 257 MET A 259 LEU A 269 SITE 6 AC1 30 GLU A 270 ASN A 272 DAL A 311 DAL A 312 SITE 7 AC1 30 MG A1313 MG A1314 HOH A2194 HOH A2197 SITE 8 AC1 30 HOH A2263 HOH A2272 SITE 1 AC2 5 GLU A 270 ASN A 272 ATP A 310 MG A1314 SITE 2 AC2 5 HOH A2194 SITE 1 AC3 5 ASP A 257 GLU A 270 ATP A 310 MG A1313 SITE 2 AC3 5 HOH A2272 SITE 1 AC4 30 LYS B 97 ILE B 142 LYS B 144 GLU B 148 SITE 2 AC4 30 GLY B 149 SER B 150 SER B 151 MET B 154 SITE 3 AC4 30 GLU B 180 LYS B 181 TRP B 182 LEU B 183 SITE 4 AC4 30 GLU B 187 PHE B 209 TYR B 210 LYS B 215 SITE 5 AC4 30 ARG B 255 ASP B 257 MET B 259 LEU B 269 SITE 6 AC4 30 GLU B 270 ASN B 272 DAL B 311 DAL B 312 SITE 7 AC4 30 MG B1307 MG B1308 HOH B2165 HOH B2166 SITE 8 AC4 30 HOH B2225 HOH B2236 SITE 1 AC5 5 GLU B 270 ASN B 272 ATP B 310 MG B1308 SITE 2 AC5 5 HOH B2165 SITE 1 AC6 5 ASP B 257 GLU B 270 ATP B 310 MG B1307 SITE 2 AC6 5 HOH B2236 SITE 1 AC7 6 HOH B2181 HOH B2182 HOH B2186 HOH B2187 SITE 2 AC7 6 HOH B2307 HOH B2308 SITE 1 AC8 6 HIS A 280 HOH A2273 HOH A2278 HOH A2322 SITE 2 AC8 6 HOH A2323 HOH A2343 SITE 1 AC9 6 HIS B 280 HOH B2238 HOH B2240 HOH B2241 SITE 2 AC9 6 HOH B2286 HOH B2306 SITE 1 BC1 6 ASN A 21 TYR A 212 ARG A 288 HOH A2274 SITE 2 BC1 6 HOH A2327 HOH A2344 SITE 1 BC2 8 LEU A 20 PRO A 39 ASP A 41 ASP A 165 SITE 2 BC2 8 ARG A 168 HOH A2046 HOH A2213 HOH A2218 SITE 1 BC3 11 GLU A 15 HIS A 63 SER A 150 TYR A 216 SITE 2 BC3 11 ARG A 255 GLY A 276 SER A 281 LEU A 282 SITE 3 BC3 11 ATP A 310 HOH A2095 HOH A2308 SITE 1 BC4 12 GLU B 15 HIS B 63 SER B 150 TYR B 216 SITE 2 BC4 12 ARG B 255 GLY B 276 SER B 281 LEU B 282 SITE 3 BC4 12 ATP B 310 HOH B2018 HOH B2081 HOH B2274 CRYST1 51.230 97.800 110.120 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009081 0.00000