HEADER TRANSPORT PROTEIN 17-SEP-13 4C69 TITLE ATP BINDING TO MURINE VOLTAGE-DEPENDENT ANION CHANNEL 1 (MVDAC1). COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: VDAC-1, MVDAC1, OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN COMPND 5 1, PLASMALEMMAL PORIN, VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL COMPND 6 PROTEIN 5, VDAC-5, MVDAC5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1007065; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS TRANSPORT PROTEIN, BICELLE, OUTER MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.PAZ,J.P.COLLETIER,J.ABRAMSON REVDAT 5 20-DEC-23 4C69 1 REMARK REVDAT 4 16-JUL-14 4C69 1 JRNL REVDAT 3 18-JUN-14 4C69 1 JRNL REVDAT 2 11-JUN-14 4C69 1 JRNL REVDAT 1 04-JUN-14 4C69 0 JRNL AUTH O.P.CHOUDHARY,A.PAZ,J.L.ADELMAN,J.COLLETIER,J.ABRAMSON, JRNL AUTH 2 M.GRABE JRNL TITL STRUCTURE-GUIDED SIMULATIONS ILLUMINATE THE MECHANISM OF ATP JRNL TITL 2 TRANSPORT THROUGH VDAC1. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 626 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24908397 JRNL DOI 10.1038/NSMB.2841 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 17142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4972 - 4.1272 0.99 2795 145 0.1896 0.2418 REMARK 3 2 4.1272 - 3.2810 0.99 2744 153 0.1914 0.2550 REMARK 3 3 3.2810 - 2.8677 1.00 2785 128 0.2097 0.2523 REMARK 3 4 2.8677 - 2.6062 1.00 2745 153 0.2285 0.3079 REMARK 3 5 2.6062 - 2.4197 1.00 2732 141 0.2689 0.3333 REMARK 3 6 2.4197 - 2.2773 0.91 2478 143 0.2843 0.3385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2396 REMARK 3 ANGLE : 1.109 3241 REMARK 3 CHIRALITY : 0.077 342 REMARK 3 PLANARITY : 0.004 397 REMARK 3 DIHEDRAL : 17.647 919 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN X AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7627 34.5786 22.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.3412 REMARK 3 T33: 0.3655 T12: -0.0109 REMARK 3 T13: 0.0403 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.4061 L22: 5.4804 REMARK 3 L33: 7.6273 L12: -0.2452 REMARK 3 L13: 0.1808 L23: -5.3106 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.0267 S13: -0.0521 REMARK 3 S21: -0.3706 S22: 0.4721 S23: 0.6204 REMARK 3 S31: 0.5731 S32: -0.3032 S33: -0.4896 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN X AND (RESID 26 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9614 30.7701 5.9695 REMARK 3 T TENSOR REMARK 3 T11: 0.7462 T22: 0.9286 REMARK 3 T33: 0.4800 T12: 0.0772 REMARK 3 T13: 0.1034 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 9.7778 L22: 4.2960 REMARK 3 L33: 2.7365 L12: 4.3368 REMARK 3 L13: -0.2084 L23: 0.3589 REMARK 3 S TENSOR REMARK 3 S11: 0.8250 S12: -1.0044 S13: -0.1704 REMARK 3 S21: 1.1055 S22: -0.6603 S23: 0.1726 REMARK 3 S31: 0.4246 S32: 0.8523 S33: -0.2537 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN X AND (RESID 49 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5754 27.6806 3.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.6360 T22: 0.9072 REMARK 3 T33: 0.6336 T12: 0.1480 REMARK 3 T13: 0.1255 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 6.0533 L22: 9.1497 REMARK 3 L33: 8.0015 L12: 6.5841 REMARK 3 L13: -1.7242 L23: -4.7584 REMARK 3 S TENSOR REMARK 3 S11: -0.2049 S12: 0.5035 S13: -0.3574 REMARK 3 S21: -0.2760 S22: 0.4004 S23: -0.7170 REMARK 3 S31: -0.6684 S32: -0.1779 S33: 0.0162 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN X AND (RESID 65 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2321 17.3053 8.1724 REMARK 3 T TENSOR REMARK 3 T11: 0.3788 T22: 0.7764 REMARK 3 T33: 0.4398 T12: 0.1108 REMARK 3 T13: -0.1335 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 4.7795 L22: 10.2138 REMARK 3 L33: 4.2994 L12: -0.2899 REMARK 3 L13: -1.0694 L23: -2.1450 REMARK 3 S TENSOR REMARK 3 S11: 0.4110 S12: 0.8085 S13: -0.5104 REMARK 3 S21: -0.5715 S22: 0.0319 S23: 0.3066 REMARK 3 S31: -0.0669 S32: -0.3671 S33: -0.1986 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN X AND (RESID 89 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7126 12.6981 18.3581 REMARK 3 T TENSOR REMARK 3 T11: 0.4821 T22: 0.6437 REMARK 3 T33: 0.3301 T12: -0.0148 REMARK 3 T13: -0.0267 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 8.8194 L22: 4.7612 REMARK 3 L33: 4.2033 L12: 0.7704 REMARK 3 L13: -5.6518 L23: -2.6738 REMARK 3 S TENSOR REMARK 3 S11: 0.3298 S12: 1.0092 S13: -0.1719 REMARK 3 S21: -0.4208 S22: -0.1468 S23: -0.1012 REMARK 3 S31: -0.1868 S32: -1.5288 S33: -0.2322 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN X AND (RESID 104 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3679 15.5652 12.6682 REMARK 3 T TENSOR REMARK 3 T11: 0.4832 T22: 0.9229 REMARK 3 T33: 0.5211 T12: 0.1374 REMARK 3 T13: -0.0633 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 3.9496 L22: 4.9488 REMARK 3 L33: 4.1472 L12: 0.3506 REMARK 3 L13: 0.5909 L23: -2.3852 REMARK 3 S TENSOR REMARK 3 S11: 0.3536 S12: 1.6259 S13: 0.5904 REMARK 3 S21: -0.7480 S22: 0.2217 S23: -0.3551 REMARK 3 S31: 0.0028 S32: 0.1364 S33: -0.3017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN X AND (RESID 121 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4628 17.4497 24.4590 REMARK 3 T TENSOR REMARK 3 T11: 0.4656 T22: 0.3049 REMARK 3 T33: 0.3001 T12: 0.0265 REMARK 3 T13: -0.0036 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 7.5201 L22: 5.9308 REMARK 3 L33: 5.1960 L12: -1.9626 REMARK 3 L13: -0.4251 L23: 4.9992 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: 0.8241 S13: -0.5295 REMARK 3 S21: -0.5404 S22: -0.0505 S23: 0.2052 REMARK 3 S31: -0.4832 S32: -0.1162 S33: -0.3858 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN X AND (RESID 147 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1084 23.4291 27.3603 REMARK 3 T TENSOR REMARK 3 T11: 0.4170 T22: 0.4931 REMARK 3 T33: 0.3890 T12: -0.0261 REMARK 3 T13: -0.0672 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 6.4576 L22: 7.0675 REMARK 3 L33: 4.2361 L12: -1.8462 REMARK 3 L13: -1.5025 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.2391 S12: 0.1742 S13: -0.5485 REMARK 3 S21: 0.1411 S22: 0.2557 S23: -0.3198 REMARK 3 S31: 0.2100 S32: 0.9167 S33: -0.2528 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN X AND (RESID 175 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9124 37.5914 29.9222 REMARK 3 T TENSOR REMARK 3 T11: 0.4871 T22: 0.2827 REMARK 3 T33: 0.3293 T12: -0.0287 REMARK 3 T13: -0.0496 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 7.8626 L22: 8.2987 REMARK 3 L33: 4.8738 L12: -6.0382 REMARK 3 L13: 0.8340 L23: -0.6198 REMARK 3 S TENSOR REMARK 3 S11: -0.1486 S12: -0.1051 S13: -0.2928 REMARK 3 S21: 0.1090 S22: 0.3298 S23: 0.1701 REMARK 3 S31: -0.2769 S32: -0.2037 S33: -0.1663 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN X AND (RESID 200 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9477 44.8524 25.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.5736 T22: 0.3775 REMARK 3 T33: 0.3408 T12: 0.0242 REMARK 3 T13: 0.0973 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 2.8208 L22: 3.1349 REMARK 3 L33: 2.5110 L12: -0.0038 REMARK 3 L13: 2.6298 L23: -0.9606 REMARK 3 S TENSOR REMARK 3 S11: -0.2739 S12: 0.1296 S13: -0.2791 REMARK 3 S21: -0.0783 S22: 0.2368 S23: 0.0340 REMARK 3 S31: -0.2225 S32: -0.1797 S33: 0.0360 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN X AND (RESID 226 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9726 49.1585 18.1068 REMARK 3 T TENSOR REMARK 3 T11: 0.6244 T22: 0.4194 REMARK 3 T33: 0.3054 T12: 0.0944 REMARK 3 T13: 0.0895 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.3996 L22: 4.9579 REMARK 3 L33: 5.6124 L12: 2.3617 REMARK 3 L13: 4.3774 L23: 2.2393 REMARK 3 S TENSOR REMARK 3 S11: -0.6796 S12: 0.2029 S13: -0.2022 REMARK 3 S21: -0.6502 S22: 0.0806 S23: 0.3942 REMARK 3 S31: -0.4235 S32: -0.6976 S33: 0.5008 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN X AND (RESID 242 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1218 48.5486 10.0813 REMARK 3 T TENSOR REMARK 3 T11: 0.6412 T22: 0.3941 REMARK 3 T33: 0.3567 T12: 0.0242 REMARK 3 T13: 0.0189 T23: 0.1080 REMARK 3 L TENSOR REMARK 3 L11: 8.5763 L22: 3.1637 REMARK 3 L33: 9.0689 L12: 0.6263 REMARK 3 L13: 6.8433 L23: 3.7501 REMARK 3 S TENSOR REMARK 3 S11: -0.4380 S12: 0.6306 S13: 0.8814 REMARK 3 S21: -0.0989 S22: 0.0885 S23: 0.2943 REMARK 3 S31: -0.7789 S32: -0.1003 S33: 0.2591 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN X AND (RESID 268 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4315 46.6648 5.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.9681 T22: 0.9233 REMARK 3 T33: 0.5731 T12: 0.0024 REMARK 3 T13: 0.0906 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 4.0784 L22: 4.5312 REMARK 3 L33: 5.6207 L12: 2.4133 REMARK 3 L13: 2.9580 L23: 2.0897 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 1.3764 S13: 0.7105 REMARK 3 S21: -0.0634 S22: 0.6391 S23: 0.3904 REMARK 3 S31: -1.2523 S32: 0.4812 S33: -0.6386 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ATP MOLECULE WAS DOCKED BASED ON REMARK 3 DENSITES GENERATED BY A FO-FO MAP OF THE DIFFERENCE BETWEEN THE REMARK 3 ATP SOAKED DATASET AND A NATIVE ONE. THE FINAL HIGH B-FACTORS REMARK 3 FOR THE REFINED ATP STRONGLY SUGGEST THAT THE BINDING SITE IS A REMARK 3 LOW-AFFINITY ONE IN WHICH ATP VIBRATES CONSIDERABLY AROUND ITS REMARK 3 EQUILIBRIUM POSITION. THE COORDINATES REPRESENT THE MOST REMARK 3 PROBABLE LOCATION OF THE ATP. REMARK 4 REMARK 4 4C69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.210 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.640 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.62 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3EMN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% MPD, 0.1 M TRISHCL (PH 8.5), REMARK 280 10% PEG400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.07600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.18450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.07600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.18450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X -11 REMARK 465 ARG X -10 REMARK 465 GLY X -9 REMARK 465 SER X -8 REMARK 465 HIS X -7 REMARK 465 HIS X -6 REMARK 465 HIS X -5 REMARK 465 HIS X -4 REMARK 465 HIS X -3 REMARK 465 HIS X -2 REMARK 465 GLY X -1 REMARK 465 SER X 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 2049 O HOH X 2052 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP X 64 66.96 -101.78 REMARK 500 ASP X 78 30.10 -75.08 REMARK 500 ASN X 79 12.78 57.97 REMARK 500 HIS X 122 -1.77 70.70 REMARK 500 GLU X 147 53.80 38.10 REMARK 500 THR X 188 -44.57 -138.25 REMARK 500 ASN X 269 77.74 -55.53 REMARK 500 ALA X 270 130.32 65.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LDA X 1284 REMARK 610 MC3 X 1285 REMARK 610 LDA X 1286 REMARK 610 MC3 X 1288 REMARK 610 LDA X 1289 REMARK 610 LDA X 1290 REMARK 610 LDA X 1291 REMARK 610 LDA X 1292 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "XA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 19-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 20-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA X 1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MC3 X 1285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA X 1286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP X 1287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MC3 X 1288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA X 1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA X 1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA X 1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA X 1292 DBREF 4C69 X 1 283 UNP Q60932 VDAC1_MOUSE 14 296 SEQADV 4C69 MET X -11 UNP Q60932 EXPRESSION TAG SEQADV 4C69 ARG X -10 UNP Q60932 EXPRESSION TAG SEQADV 4C69 GLY X -9 UNP Q60932 EXPRESSION TAG SEQADV 4C69 SER X -8 UNP Q60932 EXPRESSION TAG SEQADV 4C69 HIS X -7 UNP Q60932 EXPRESSION TAG SEQADV 4C69 HIS X -6 UNP Q60932 EXPRESSION TAG SEQADV 4C69 HIS X -5 UNP Q60932 EXPRESSION TAG SEQADV 4C69 HIS X -4 UNP Q60932 EXPRESSION TAG SEQADV 4C69 HIS X -3 UNP Q60932 EXPRESSION TAG SEQADV 4C69 HIS X -2 UNP Q60932 EXPRESSION TAG SEQADV 4C69 GLY X -1 UNP Q60932 EXPRESSION TAG SEQADV 4C69 SER X 0 UNP Q60932 EXPRESSION TAG SEQRES 1 X 295 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 X 295 ALA VAL PRO PRO THR TYR ALA ASP LEU GLY LYS SER ALA SEQRES 3 X 295 ARG ASP VAL PHE THR LYS GLY TYR GLY PHE GLY LEU ILE SEQRES 4 X 295 LYS LEU ASP LEU LYS THR LYS SER GLU ASN GLY LEU GLU SEQRES 5 X 295 PHE THR SER SER GLY SER ALA ASN THR GLU THR THR LYS SEQRES 6 X 295 VAL ASN GLY SER LEU GLU THR LYS TYR ARG TRP THR GLU SEQRES 7 X 295 TYR GLY LEU THR PHE THR GLU LYS TRP ASN THR ASP ASN SEQRES 8 X 295 THR LEU GLY THR GLU ILE THR VAL GLU ASP GLN LEU ALA SEQRES 9 X 295 ARG GLY LEU LYS LEU THR PHE ASP SER SER PHE SER PRO SEQRES 10 X 295 ASN THR GLY LYS LYS ASN ALA LYS ILE LYS THR GLY TYR SEQRES 11 X 295 LYS ARG GLU HIS ILE ASN LEU GLY CYS ASP VAL ASP PHE SEQRES 12 X 295 ASP ILE ALA GLY PRO SER ILE ARG GLY ALA LEU VAL LEU SEQRES 13 X 295 GLY TYR GLU GLY TRP LEU ALA GLY TYR GLN MET ASN PHE SEQRES 14 X 295 GLU THR SER LYS SER ARG VAL THR GLN SER ASN PHE ALA SEQRES 15 X 295 VAL GLY TYR LYS THR ASP GLU PHE GLN LEU HIS THR ASN SEQRES 16 X 295 VAL ASN ASP GLY THR GLU PHE GLY GLY SER ILE TYR GLN SEQRES 17 X 295 LYS VAL ASN LYS LYS LEU GLU THR ALA VAL ASN LEU ALA SEQRES 18 X 295 TRP THR ALA GLY ASN SER ASN THR ARG PHE GLY ILE ALA SEQRES 19 X 295 ALA LYS TYR GLN VAL ASP PRO ASP ALA CYS PHE SER ALA SEQRES 20 X 295 LYS VAL ASN ASN SER SER LEU ILE GLY LEU GLY TYR THR SEQRES 21 X 295 GLN THR LEU LYS PRO GLY ILE LYS LEU THR LEU SER ALA SEQRES 22 X 295 LEU LEU ASP GLY LYS ASN VAL ASN ALA GLY GLY HIS LYS SEQRES 23 X 295 LEU GLY LEU GLY LEU GLU PHE GLN ALA HET LDA X1284 12 HET MC3 X1285 23 HET LDA X1286 12 HET ATP X1287 31 HET MC3 X1288 23 HET LDA X1289 9 HET LDA X1290 12 HET LDA X1291 9 HET LDA X1292 12 HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM MC3 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 LDA 6(C14 H31 N O) FORMUL 3 MC3 2(C36 H72 N O8 P) FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 11 HOH *54(H2 O) HELIX 1 1 GLY X 11 LYS X 20 1 10 HELIX 2 2 LYS X 266 VAL X 268 5 3 SHEET 1 XA20 LEU X 26 LYS X 32 0 SHEET 2 XA20 GLY X 38 ASN X 48 -1 O SER X 43 N LEU X 31 SHEET 3 XA20 VAL X 54 TRP X 64 -1 O ASN X 55 N SER X 46 SHEET 4 XA20 LEU X 69 ASN X 76 -1 O LEU X 69 N TRP X 64 SHEET 5 XA20 LEU X 81 GLU X 88 -1 O GLY X 82 N LYS X 74 SHEET 6 XA20 LEU X 95 PHE X 103 -1 O LEU X 97 N VAL X 87 SHEET 7 XA20 LYS X 110 ARG X 120 -1 O ASN X 111 N SER X 102 SHEET 8 XA20 ILE X 123 ASP X 132 -1 O ILE X 123 N ARG X 120 SHEET 9 XA20 GLY X 135 TYR X 146 -1 O GLY X 135 N ASP X 132 SHEET 10 XA20 TRP X 149 GLU X 158 -1 O TRP X 149 N TYR X 146 SHEET 11 XA20 ARG X 163 LYS X 174 -1 O ARG X 163 N GLU X 158 SHEET 12 XA20 PHE X 178 ASN X 185 -1 O LEU X 180 N TYR X 173 SHEET 13 XA20 GLU X 189 ASN X 199 -1 O GLU X 189 N ASN X 185 SHEET 14 XA20 LEU X 202 THR X 211 -1 O LEU X 202 N ASN X 199 SHEET 15 XA20 THR X 217 ASP X 228 -1 O ARG X 218 N ALA X 209 SHEET 16 XA20 ALA X 231 ASN X 238 -1 O ALA X 231 N ASP X 228 SHEET 17 XA20 LEU X 242 LYS X 252 -1 O LEU X 242 N ASN X 238 SHEET 18 XA20 ILE X 255 ASP X 264 -1 O ILE X 255 N LEU X 251 SHEET 19 XA20 LYS X 274 GLN X 282 -1 O LYS X 274 N LEU X 262 SHEET 20 XA20 LEU X 26 LYS X 32 1 O LEU X 26 N LEU X 277 SITE 1 AC1 2 SER X 241 GLY X 265 SITE 1 AC2 7 CYS X 127 ILE X 138 TRP X 149 THR X 159 SITE 2 AC2 7 TYR X 173 LDA X1291 HOH X2053 SITE 1 AC3 4 MET X 155 PHE X 157 PHE X 178 GLN X 196 SITE 1 AC4 2 LYS X 12 LYS X 20 SITE 1 AC5 9 ALA X 92 ARG X 93 TYR X 118 THR X 182 SITE 2 AC5 9 PHE X 190 ILE X 194 LEU X 208 TRP X 210 SITE 3 AC5 9 HOH X2054 SITE 1 AC6 2 LDA X1291 LDA X1292 SITE 1 AC7 4 ILE X 221 ALA X 222 ALA X 235 LDA X1292 SITE 1 AC8 2 MC3 X1285 LDA X1289 SITE 1 AC9 2 LDA X1289 LDA X1290 CRYST1 100.152 58.369 66.545 90.00 99.25 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009985 0.000000 0.001626 0.00000 SCALE2 0.000000 0.017132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015225 0.00000