HEADER TRANSFERASE 19-SEP-13 4C6V TITLE CRYSTAL STRUCTURE OF M. TUBERCULOSIS KASA IN COMPLEX WITH TLM5 (SOAK TITLE 2 FOR 5 MIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-KETOACYL ACP SYNTHASE; COMPND 5 EC: 2.3.1.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1772; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MC2155; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFPCA1 KEYWDS TRANSFERASE, KAS ENZYME, TYPE 2 FATTY ACID BIOSYNTHESIS, MYCOLIC ACID KEYWDS 2 SYNTHESIS, THIOLACTOMYCIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SCHIEBEL,K.KAPILASHRAMI,A.FEKETE,G.R.BOMMINENI,C.M.SCHAEFER, AUTHOR 2 M.J.MUELLER,P.J.TONGE,C.KISKER REVDAT 5 20-DEC-23 4C6V 1 REMARK LINK REVDAT 4 11-DEC-13 4C6V 1 JRNL REVDAT 3 23-OCT-13 4C6V 1 JRNL REVDAT 2 16-OCT-13 4C6V 1 JRNL REVDAT 1 09-OCT-13 4C6V 0 JRNL AUTH J.SCHIEBEL,K.KAPILASHRAMI,A.FEKETE,G.R.BOMMINENI, JRNL AUTH 2 C.M.SCHAEFER,M.J.MUELLER,P.J.TONGE,C.KISKER JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF MYCOLIC ACID JRNL TITL 2 PRECURSORS BY KASA, A CONDENSING ENZYME AND DRUG TARGET FROM JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS JRNL REF J.BIOL.CHEM. V. 288 34190 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24108128 JRNL DOI 10.1074/JBC.M113.511436 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 729 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3030 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67000 REMARK 3 B22 (A**2) : 1.67000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : 0.84000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.785 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.395 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3109 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4225 ; 1.662 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 6.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.450 ;23.415 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;18.150 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2425 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2052 ; 0.684 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3262 ; 1.299 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1057 ; 2.036 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 963 ; 3.366 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0363 -15.7919 34.4034 REMARK 3 T TENSOR REMARK 3 T11: 0.2920 T22: 0.2099 REMARK 3 T33: 0.2639 T12: -0.0194 REMARK 3 T13: 0.0328 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.9850 L22: 3.4480 REMARK 3 L33: 1.3810 L12: -0.0327 REMARK 3 L13: 0.2750 L23: 0.2710 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.0766 S13: -0.4201 REMARK 3 S21: -0.1551 S22: 0.0354 S23: 0.3662 REMARK 3 S31: 0.4094 S32: -0.0819 S33: -0.1006 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6376 -19.3732 49.9745 REMARK 3 T TENSOR REMARK 3 T11: 0.1847 T22: 0.2192 REMARK 3 T33: 0.1475 T12: -0.1287 REMARK 3 T13: 0.1371 T23: -0.0881 REMARK 3 L TENSOR REMARK 3 L11: 3.5427 L22: 10.0356 REMARK 3 L33: 14.5844 L12: -3.1499 REMARK 3 L13: -1.1398 L23: 0.5309 REMARK 3 S TENSOR REMARK 3 S11: -0.1466 S12: -0.4698 S13: -0.1019 REMARK 3 S21: 0.8495 S22: 0.1374 S23: 0.7441 REMARK 3 S31: 0.8763 S32: -0.7640 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4074 -20.9592 50.5397 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.0845 REMARK 3 T33: 0.0967 T12: -0.1106 REMARK 3 T13: 0.0519 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 12.3393 L22: 5.7356 REMARK 3 L33: 5.9919 L12: -5.9134 REMARK 3 L13: -0.0065 L23: 2.2544 REMARK 3 S TENSOR REMARK 3 S11: 0.3473 S12: 0.0768 S13: -0.4781 REMARK 3 S21: 0.6009 S22: -0.5043 S23: 0.1969 REMARK 3 S31: 1.0494 S32: -0.1831 S33: 0.1571 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9132 -7.9781 56.1300 REMARK 3 T TENSOR REMARK 3 T11: 0.3509 T22: 0.1160 REMARK 3 T33: 0.3180 T12: -0.1158 REMARK 3 T13: 0.0709 T23: -0.1490 REMARK 3 L TENSOR REMARK 3 L11: 5.8857 L22: 3.6897 REMARK 3 L33: 3.0570 L12: -4.1505 REMARK 3 L13: -1.3238 L23: -0.4723 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.3667 S13: -0.0200 REMARK 3 S21: -0.0595 S22: -0.2018 S23: 0.0350 REMARK 3 S31: 0.2355 S32: -0.2473 S33: 0.1071 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 47.8543 -4.8404 46.7357 REMARK 3 T TENSOR REMARK 3 T11: 0.1434 T22: 0.0325 REMARK 3 T33: 0.0711 T12: 0.0136 REMARK 3 T13: -0.0024 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.6802 L22: 2.5768 REMARK 3 L33: 6.6023 L12: -1.5042 REMARK 3 L13: 1.0473 L23: -2.0664 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.0790 S13: 0.2981 REMARK 3 S21: 0.1067 S22: -0.1915 S23: -0.2357 REMARK 3 S31: 0.1947 S32: 0.0265 S33: 0.1514 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7081 -8.4454 33.5658 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.0481 REMARK 3 T33: 0.0603 T12: 0.0212 REMARK 3 T13: 0.0099 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.1150 L22: 2.7610 REMARK 3 L33: 2.6559 L12: -0.9309 REMARK 3 L13: 1.2473 L23: -0.9651 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: 0.0280 S13: -0.1938 REMARK 3 S21: -0.2621 S22: 0.0236 S23: 0.2144 REMARK 3 S31: 0.1398 S32: -0.1547 S33: -0.2192 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 60.3332 -20.0838 44.8292 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.2221 REMARK 3 T33: 0.6177 T12: 0.1255 REMARK 3 T13: -0.0137 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.7799 L22: 11.4615 REMARK 3 L33: 11.8428 L12: -5.5581 REMARK 3 L13: 1.2818 L23: -1.2366 REMARK 3 S TENSOR REMARK 3 S11: 0.0829 S12: 0.3241 S13: 0.3776 REMARK 3 S21: 0.0401 S22: -0.4682 S23: -1.0580 REMARK 3 S31: 1.2141 S32: 1.0445 S33: 0.3854 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 48.8976 -4.9555 29.2190 REMARK 3 T TENSOR REMARK 3 T11: 0.1894 T22: 0.1006 REMARK 3 T33: 0.0636 T12: 0.0470 REMARK 3 T13: 0.0999 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4597 L22: 2.5566 REMARK 3 L33: 1.6597 L12: -0.5946 REMARK 3 L13: 0.6870 L23: 0.1537 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: 0.1079 S13: 0.0461 REMARK 3 S21: -0.4898 S22: -0.0271 S23: -0.2906 REMARK 3 S31: -0.1356 S32: 0.1807 S33: -0.0602 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 373 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 50.1731 -9.5055 25.5366 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.1217 REMARK 3 T33: 0.1065 T12: 0.0702 REMARK 3 T13: 0.1432 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.9463 L22: 2.9435 REMARK 3 L33: 1.8110 L12: -0.1433 REMARK 3 L13: -0.2830 L23: 1.9441 REMARK 3 S TENSOR REMARK 3 S11: 0.2092 S12: 0.2670 S13: 0.0904 REMARK 3 S21: -0.7197 S22: 0.0138 S23: -0.4895 REMARK 3 S31: -0.3811 S32: 0.1310 S33: -0.2230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4C6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290056302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WGE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 0.2 M K/NA-TARTRATE, 1.5 REMARK 280 MM TCEP, PH 9.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.95033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.90067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.90067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.95033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 97.90067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 119.41 -36.23 REMARK 500 LEU A 140 -18.11 -34.47 REMARK 500 ALA A 170 -119.88 35.35 REMARK 500 ARG A 228 59.75 -118.90 REMARK 500 ASP A 235 16.46 -140.31 REMARK 500 ALA A 274 55.06 39.27 REMARK 500 VAL A 278 -35.08 -131.25 REMARK 500 ALA A 314 11.95 94.18 REMARK 500 ILE A 347 -103.13 49.66 REMARK 500 PRO A 376 128.99 -36.31 REMARK 500 PHE A 404 140.50 -39.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1418 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 309 OD1 REMARK 620 2 ASN A 309 O 72.9 REMARK 620 3 ALA A 310 O 77.4 76.9 REMARK 620 4 GLU A 354 OE1 90.3 156.1 83.0 REMARK 620 5 ASN A 399 OD1 82.4 78.2 151.6 117.1 REMARK 620 6 ASN A 400 O 163.5 92.6 107.5 105.9 87.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLG A 1419 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C6U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS KASA IN COMPLEX WITH TLM5 REMARK 900 RELATED ID: 4C6W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA REMARK 900 RELATED ID: 4C6X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH REMARK 900 THIOLACTOMYCIN (TLM) REMARK 900 RELATED ID: 4C6Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH TLM3 REMARK 900 RELATED ID: 4C70 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH TLM4 REMARK 900 RELATED ID: 4C71 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH REMARK 900 TLM18 REMARK 900 RELATED ID: 4C72 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH TLM5 REMARK 900 RELATED ID: 4C73 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH TLM6 DBREF 4C6V A 1 416 UNP I6Y8T4 I6Y8T4_MYCTU 1 416 SEQADV 4C6V MET A -22 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V GLY A -21 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V SER A -20 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V SER A -19 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V HIS A -18 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V HIS A -17 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V HIS A -16 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V HIS A -15 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V HIS A -14 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V HIS A -13 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V SER A -12 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V SER A -11 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V GLY A -10 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V LEU A -9 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V VAL A -8 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V PRO A -7 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V ARG A -6 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V GLY A -5 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V SER A -4 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V HIS A -3 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V MET A -2 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V ALA A -1 UNP I6Y8T4 EXPRESSION TAG SEQADV 4C6V SER A 0 UNP I6Y8T4 EXPRESSION TAG SEQRES 1 A 439 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 439 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET SER GLN SEQRES 3 A 439 PRO SER THR ALA ASN GLY GLY PHE PRO SER VAL VAL VAL SEQRES 4 A 439 THR ALA VAL THR ALA THR THR SER ILE SER PRO ASP ILE SEQRES 5 A 439 GLU SER THR TRP LYS GLY LEU LEU ALA GLY GLU SER GLY SEQRES 6 A 439 ILE HIS ALA LEU GLU ASP GLU PHE VAL THR LYS TRP ASP SEQRES 7 A 439 LEU ALA VAL LYS ILE GLY GLY HIS LEU LYS ASP PRO VAL SEQRES 8 A 439 ASP SER HIS MET GLY ARG LEU ASP MET ARG ARG MET SER SEQRES 9 A 439 TYR VAL GLN ARG MET GLY LYS LEU LEU GLY GLY GLN LEU SEQRES 10 A 439 TRP GLU SER ALA GLY SER PRO GLU VAL ASP PRO ASP ARG SEQRES 11 A 439 PHE ALA VAL VAL VAL GLY THR GLY LEU GLY GLY ALA GLU SEQRES 12 A 439 ARG ILE VAL GLU SER TYR ASP LEU MET ASN ALA GLY GLY SEQRES 13 A 439 PRO ARG LYS VAL SER PRO LEU ALA VAL GLN MET ILE MET SEQRES 14 A 439 PRO ASN GLY ALA ALA ALA VAL ILE GLY LEU GLN LEU GLY SEQRES 15 A 439 ALA ARG ALA GLY VAL MET THR PRO VAL SER ALA CYS SER SEQRES 16 A 439 SER GLY SER GLU ALA ILE ALA HIS ALA TRP ARG GLN ILE SEQRES 17 A 439 VAL MET GLY ASP ALA ASP VAL ALA VAL CYS GLY GLY VAL SEQRES 18 A 439 GLU GLY PRO ILE GLU ALA LEU PRO ILE ALA ALA PHE SER SEQRES 19 A 439 MET MET ARG ALA MET SER THR ARG ASN ASP GLU PRO GLU SEQRES 20 A 439 ARG ALA SER ARG PRO PHE ASP LYS ASP ARG ASP GLY PHE SEQRES 21 A 439 VAL PHE GLY GLU ALA GLY ALA LEU MET LEU ILE GLU THR SEQRES 22 A 439 GLU GLU HIS ALA LYS ALA ARG GLY ALA LYS PRO LEU ALA SEQRES 23 A 439 ARG LEU LEU GLY ALA GLY ILE THR SER ASP ALA PHE HIS SEQRES 24 A 439 MET VAL ALA PRO ALA ALA ASP GLY VAL ARG ALA GLY ARG SEQRES 25 A 439 ALA MET THR ARG SER LEU GLU LEU ALA GLY LEU SER PRO SEQRES 26 A 439 ALA ASP ILE ASP HIS VAL ASN ALA HIS GLY THR ALA THR SEQRES 27 A 439 PRO ILE GLY ASP ALA ALA GLU ALA ASN ALA ILE ARG VAL SEQRES 28 A 439 ALA GLY CYS ASP GLN ALA ALA VAL TYR ALA PRO LYS SER SEQRES 29 A 439 ALA LEU GLY HIS SER ILE GLY ALA VAL GLY ALA LEU GLU SEQRES 30 A 439 SER VAL LEU THR VAL LEU THR LEU ARG ASP GLY VAL ILE SEQRES 31 A 439 PRO PRO THR LEU ASN TYR GLU THR PRO ASP PRO GLU ILE SEQRES 32 A 439 ASP LEU ASP VAL VAL ALA GLY GLU PRO ARG TYR GLY ASP SEQRES 33 A 439 TYR ARG TYR ALA VAL ASN ASN SER PHE GLY PHE GLY GLY SEQRES 34 A 439 HIS ASN VAL ALA LEU ALA PHE GLY ARG TYR HET EDO A1417 4 HET K A1418 1 HET TLG A1419 16 HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETNAM TLG (5R)-3-ACETYL-4-HYDROXY-5-METHYL-5-[(1Z)-2-METHYLBUTA- HETNAM 2 TLG 1,3-DIEN-1-YL]THIOPHEN-2(5H)-ONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 K K 1+ FORMUL 4 TLG C12 H14 O3 S FORMUL 5 HOH *88(H2 O) HELIX 1 1 ASP A 28 LEU A 37 1 10 HELIX 2 2 GLU A 49 TRP A 54 1 6 HELIX 3 3 PRO A 67 MET A 72 5 6 HELIX 4 4 GLY A 73 MET A 80 1 8 HELIX 5 5 SER A 81 ALA A 98 1 18 HELIX 6 6 ASP A 104 ASP A 106 5 3 HELIX 7 7 ALA A 119 GLY A 133 1 15 HELIX 8 8 PRO A 134 VAL A 137 5 4 HELIX 9 9 SER A 138 LEU A 140 5 3 HELIX 10 10 ALA A 141 MET A 146 1 6 HELIX 11 11 ASN A 148 GLY A 159 1 12 HELIX 12 12 SER A 169 CYS A 171 5 3 HELIX 13 13 SER A 172 MET A 187 1 16 HELIX 14 14 GLU A 203 MET A 213 1 11 HELIX 15 15 GLU A 222 ALA A 226 5 5 HELIX 16 16 GLU A 251 ARG A 257 1 7 HELIX 17 17 GLY A 284 GLY A 299 1 16 HELIX 18 18 SER A 301 ILE A 305 5 5 HELIX 19 19 THR A 315 ALA A 329 1 15 HELIX 20 20 PRO A 339 GLY A 344 1 6 HELIX 21 21 ALA A 349 GLY A 365 1 17 SHEET 1 AA11 VAL A 164 MET A 165 0 SHEET 2 AA11 PHE A 108 GLY A 113 1 O VAL A 110 N MET A 165 SHEET 3 AA11 VAL A 192 GLY A 197 1 O VAL A 192 N ALA A 109 SHEET 4 AA11 ALA A 242 THR A 250 -1 O ALA A 244 N GLY A 197 SHEET 5 AA11 VAL A 14 THR A 23 -1 O VAL A 15 N GLU A 249 SHEET 6 AA11 ALA A 263 SER A 272 -1 O ALA A 263 N VAL A 16 SHEET 7 AA11 HIS A 407 GLY A 414 -1 O ASN A 408 N THR A 271 SHEET 8 AA11 TYR A 396 GLY A 403 -1 O ALA A 397 N PHE A 413 SHEET 9 AA11 HIS A 307 ASN A 309 1 O HIS A 307 N VAL A 398 SHEET 10 AA11 ALA A 335 TYR A 337 1 O ALA A 335 N VAL A 308 SHEET 11 AA11 ASP A 383 VAL A 384 1 O ASP A 383 N VAL A 336 SHEET 1 AB 2 HIS A 44 ALA A 45 0 SHEET 2 AB 2 ILE A 60 GLY A 61 -1 O GLY A 61 N HIS A 44 SHEET 1 AC 2 VAL A 366 ILE A 367 0 SHEET 2 AC 2 ARG A 390 TYR A 391 -1 O ARG A 390 N ILE A 367 LINK OD1 ASN A 309 K K A1418 1555 1555 2.83 LINK O ASN A 309 K K A1418 1555 1555 2.62 LINK O ALA A 310 K K A1418 1555 1555 2.94 LINK OE1 GLU A 354 K K A1418 1555 1555 2.50 LINK OD1 ASN A 399 K K A1418 1555 1555 2.53 LINK O ASN A 400 K K A1418 1555 1555 2.72 SITE 1 AC1 2 VAL A 19 GLU A 30 SITE 1 AC2 6 ASN A 309 ALA A 310 HIS A 311 GLU A 354 SITE 2 AC2 6 ASN A 399 ASN A 400 SITE 1 AC3 14 CYS A 171 PHE A 237 ASP A 273 VAL A 278 SITE 2 AC3 14 ALA A 279 PRO A 280 HIS A 311 THR A 313 SITE 3 AC3 14 THR A 315 HIS A 345 PHE A 402 GLY A 403 SITE 4 AC3 14 PHE A 404 GLY A 406 CRYST1 77.230 77.230 146.851 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012948 0.007476 0.000000 0.00000 SCALE2 0.000000 0.014951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006810 0.00000