HEADER LIGASE 30-SEP-13 4C8F TITLE MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: ECTODOMAIN, RESIDUES 53-205; COMPND 5 SYNONYM: ZINC/RING FINGER PROTEIN 3, ZNRF3; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: TRANSIENT; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS LIGASE, WNT, RNF43, LGR4, LGR5, LGR6, RSPO, R-SPONDIN, R-SPO, RSPO1, KEYWDS 2 RSPO2, RSPO3, RSPO4, RECEPTOR, MEMBRANE, SIGNALLING EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,E.Y.JONES REVDAT 3 08-MAY-24 4C8F 1 SHEET REVDAT 2 27-NOV-13 4C8F 1 JRNL REVDAT 1 20-NOV-13 4C8F 0 JRNL AUTH M.ZEBISCH,Y.XU,C.KRASTEV,B.T.MACDONALD,M.CHEN,R.J.C.GILBERT, JRNL AUTH 2 X.HE,E.Y.JONES JRNL TITL STRUCTURAL AND MOLECULAR BASIS OF ZNRF3/RNF43 TRANSMEMBRANE JRNL TITL 2 UBIQUITIN LIGASE INHIBITION BY THE WNT AGONIST R-SPONDIN. JRNL REF NAT.COMMUN. V. 4 2787 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 24225776 JRNL DOI 10.1038/NCOMMS3787 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 17441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.341 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 922 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : -2.74000 REMARK 3 B33 (A**2) : 2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.588 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.476 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.350 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.827 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4242 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4170 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5742 ; 1.577 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9582 ; 0.801 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 7.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;32.606 ;24.343 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 731 ;19.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.764 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 665 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4778 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 908 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4C8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.59900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.31450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.59900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.31450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 50 REMARK 465 THR A 51 REMARK 465 GLY A 52 REMARK 465 LYS A 53 REMARK 465 HIS A 99 REMARK 465 PRO A 100 REMARK 465 LEU A 101 REMARK 465 GLY A 102 REMARK 465 LEU A 103 REMARK 465 CYS A 104 REMARK 465 ASN A 105 REMARK 465 ASN A 106 REMARK 465 ASN A 107 REMARK 465 ASP A 108 REMARK 465 GLU A 109 REMARK 465 GLU A 110 REMARK 465 ASP A 111 REMARK 465 LEU A 112 REMARK 465 LEU A 205 REMARK 465 GLY A 206 REMARK 465 THR A 207 REMARK 465 LYS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 GLU B 50 REMARK 465 THR B 51 REMARK 465 GLY B 52 REMARK 465 LYS B 53 REMARK 465 HIS B 99 REMARK 465 PRO B 100 REMARK 465 LEU B 101 REMARK 465 GLY B 102 REMARK 465 LEU B 103 REMARK 465 CYS B 104 REMARK 465 ASN B 105 REMARK 465 ASN B 106 REMARK 465 ASN B 107 REMARK 465 ASP B 108 REMARK 465 GLU B 109 REMARK 465 GLU B 110 REMARK 465 ASP B 111 REMARK 465 LEU B 112 REMARK 465 TYR B 113 REMARK 465 LEU B 205 REMARK 465 GLY B 206 REMARK 465 THR B 207 REMARK 465 LYS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 GLU C 50 REMARK 465 THR C 51 REMARK 465 GLY C 52 REMARK 465 LYS C 53 REMARK 465 LEU C 101 REMARK 465 GLY C 102 REMARK 465 LEU C 103 REMARK 465 CYS C 104 REMARK 465 ASN C 105 REMARK 465 ASN C 106 REMARK 465 ASN C 107 REMARK 465 ASP C 108 REMARK 465 GLU C 109 REMARK 465 GLU C 110 REMARK 465 ASP C 111 REMARK 465 LEU C 112 REMARK 465 LEU C 205 REMARK 465 GLY C 206 REMARK 465 THR C 207 REMARK 465 LYS C 208 REMARK 465 HIS C 209 REMARK 465 HIS C 210 REMARK 465 HIS C 211 REMARK 465 HIS C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 465 GLU D 50 REMARK 465 THR D 51 REMARK 465 GLY D 52 REMARK 465 LYS D 53 REMARK 465 HIS D 99 REMARK 465 PRO D 100 REMARK 465 LEU D 101 REMARK 465 GLY D 102 REMARK 465 LEU D 103 REMARK 465 CYS D 104 REMARK 465 ASN D 105 REMARK 465 ASN D 106 REMARK 465 ASN D 107 REMARK 465 ASP D 108 REMARK 465 GLU D 109 REMARK 465 GLU D 110 REMARK 465 ASP D 111 REMARK 465 LEU D 112 REMARK 465 LEU D 205 REMARK 465 GLY D 206 REMARK 465 THR D 207 REMARK 465 LYS D 208 REMARK 465 HIS D 209 REMARK 465 HIS D 210 REMARK 465 HIS D 211 REMARK 465 HIS D 212 REMARK 465 HIS D 213 REMARK 465 HIS D 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 GLU C 54 CG CD OE1 OE2 REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 TYR C 115 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 54 CG CD OE1 OE2 REMARK 470 GLU D 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 70 124.27 -27.38 REMARK 500 MET A 88 67.58 -103.30 REMARK 500 GLU A 92 141.29 -173.67 REMARK 500 CYS A 133 -72.47 -44.16 REMARK 500 ALA A 148 119.50 -37.79 REMARK 500 SER A 156 -70.01 -38.12 REMARK 500 ASP A 171 78.98 -114.75 REMARK 500 ALA A 198 131.43 165.15 REMARK 500 MET B 88 64.61 -108.01 REMARK 500 LEU B 123 135.67 -36.80 REMARK 500 ASP B 129 64.27 -112.32 REMARK 500 ALA B 148 132.23 -32.56 REMARK 500 MET C 88 48.58 -89.21 REMARK 500 TYR C 115 150.54 -41.98 REMARK 500 CYS C 133 -72.56 -31.48 REMARK 500 ALA C 150 169.55 174.05 REMARK 500 SER C 169 32.31 -85.81 REMARK 500 ASP C 171 67.41 -119.28 REMARK 500 LYS C 181 -167.45 -167.88 REMARK 500 ALA C 198 146.46 -179.14 REMARK 500 SER D 65 173.78 -58.87 REMARK 500 MET D 88 56.45 -100.71 REMARK 500 THR D 135 -177.04 -65.35 REMARK 500 ALA D 148 128.77 -33.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 113 GLU A 114 149.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C84 RELATED DB: PDB REMARK 900 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C85 RELATED DB: PDB REMARK 900 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C86 RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C8A RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C8C RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM III REMARK 900 RELATED ID: 4C8P RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM V, DISULFIDE-BRIDGED S90C REMARK 900 VARIANT REMARK 900 RELATED ID: 4C8T RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C8U RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C8V RELATED DB: PDB REMARK 900 XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I REMARK 900 RELATED ID: 4C8W RELATED DB: PDB REMARK 900 XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM II REMARK 900 RELATED ID: 4C99 RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH MOUSE RSPO2 FU1 -FU2 CRYSTAL REMARK 900 FORM I REMARK 900 RELATED ID: 4C9A RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 (SELENO MET) CRYSTAL FORM I REMARK 900 RELATED ID: 4C9E RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 (SELENO MET) CRYSTAL FORM II REMARK 900 RELATED ID: 4C9R RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 CRYSTAL FORM I REMARK 900 RELATED ID: 4C9U RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 CRYSTAL FORM II REMARK 900 RELATED ID: 4C9V RELATED DB: PDB REMARK 900 XENOPUS RNF43 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 DBREF 4C8F A 53 205 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 DBREF 4C8F B 53 205 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 DBREF 4C8F C 53 205 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 DBREF 4C8F D 53 205 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 SEQADV 4C8F GLU A 50 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR A 51 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY A 52 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY A 206 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR A 207 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F LYS A 208 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS A 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS A 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS A 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS A 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS A 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS A 214 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLU B 50 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR B 51 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY B 52 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY B 206 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR B 207 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F LYS B 208 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS B 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS B 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS B 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS B 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS B 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS B 214 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLU C 50 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR C 51 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY C 52 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY C 206 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR C 207 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F LYS C 208 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS C 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS C 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS C 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS C 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS C 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS C 214 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLU D 50 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR D 51 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY D 52 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F GLY D 206 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F THR D 207 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F LYS D 208 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS D 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS D 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS D 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS D 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS D 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C8F HIS D 214 UNP Q5SSZ7 EXPRESSION TAG SEQRES 1 A 165 GLU THR GLY LYS GLU THR ALA PHE VAL GLU VAL VAL LEU SEQRES 2 A 165 PHE GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR SEQRES 3 A 165 THR GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET SEQRES 4 A 165 LEU SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU SEQRES 5 A 165 GLY LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU SEQRES 6 A 165 TYR GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU SEQRES 7 A 165 LEU ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA SEQRES 8 A 165 LYS ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE SEQRES 9 A 165 ASP VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN SEQRES 10 A 165 GLN GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR SEQRES 11 A 165 VAL LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL SEQRES 12 A 165 ASN LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU SEQRES 13 A 165 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 165 GLU THR GLY LYS GLU THR ALA PHE VAL GLU VAL VAL LEU SEQRES 2 B 165 PHE GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR SEQRES 3 B 165 THR GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET SEQRES 4 B 165 LEU SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU SEQRES 5 B 165 GLY LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU SEQRES 6 B 165 TYR GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU SEQRES 7 B 165 LEU ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA SEQRES 8 B 165 LYS ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE SEQRES 9 B 165 ASP VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN SEQRES 10 B 165 GLN GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR SEQRES 11 B 165 VAL LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL SEQRES 12 B 165 ASN LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU SEQRES 13 B 165 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 165 GLU THR GLY LYS GLU THR ALA PHE VAL GLU VAL VAL LEU SEQRES 2 C 165 PHE GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR SEQRES 3 C 165 THR GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET SEQRES 4 C 165 LEU SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU SEQRES 5 C 165 GLY LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU SEQRES 6 C 165 TYR GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU SEQRES 7 C 165 LEU ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA SEQRES 8 C 165 LYS ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE SEQRES 9 C 165 ASP VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN SEQRES 10 C 165 GLN GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR SEQRES 11 C 165 VAL LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL SEQRES 12 C 165 ASN LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU SEQRES 13 C 165 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 D 165 GLU THR GLY LYS GLU THR ALA PHE VAL GLU VAL VAL LEU SEQRES 2 D 165 PHE GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR SEQRES 3 D 165 THR GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET SEQRES 4 D 165 LEU SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU SEQRES 5 D 165 GLY LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU SEQRES 6 D 165 TYR GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU SEQRES 7 D 165 LEU ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA SEQRES 8 D 165 LYS ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE SEQRES 9 D 165 ASP VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN SEQRES 10 D 165 GLN GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR SEQRES 11 D 165 VAL LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL SEQRES 12 D 165 ASN LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU SEQRES 13 D 165 GLY THR LYS HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 135 ARG A 146 1 12 HELIX 2 2 PRO A 159 ASN A 166 1 8 HELIX 3 3 LYS A 181 GLN A 195 1 15 HELIX 4 4 THR B 135 ARG B 146 1 12 HELIX 5 5 GLU B 160 GLY B 168 1 9 HELIX 6 6 LYS B 181 GLN B 195 1 15 HELIX 7 7 THR C 135 ARG C 146 1 12 HELIX 8 8 GLU C 160 GLN C 167 1 8 HELIX 9 9 LYS C 181 ASN C 193 1 13 HELIX 10 10 THR D 135 ARG D 146 1 12 HELIX 11 11 GLU D 160 ASN D 166 1 7 HELIX 12 12 GLN D 167 SER D 169 5 3 HELIX 13 13 LYS D 181 GLN D 195 1 15 SHEET 1 AA 8 THR A 55 SER A 65 0 SHEET 2 AA 8 TYR A 71 PHE A 82 -1 O THR A 72 N GLU A 64 SHEET 3 AA 8 VAL A 177 VAL A 180 1 O TYR A 179 N ARG A 81 SHEET 4 AA 8 ALA A 150 ASP A 154 -1 O VAL A 151 N VAL A 178 SHEET 5 AA 8 TRP A 117 LYS A 122 1 O GLY A 119 N ILE A 152 SHEET 6 AA 8 ALA A 91 MET A 98 1 O GLU A 94 N VAL A 118 SHEET 7 AA 8 ARG A 199 GLN A 203 -1 O ALA A 200 N GLY A 93 SHEET 8 AA 8 THR A 55 SER A 65 -1 O PHE A 57 N GLN A 203 SHEET 1 BA 8 THR B 55 GLU B 64 0 SHEET 2 BA 8 TYR B 71 PHE B 82 -1 O THR B 72 N GLU B 64 SHEET 3 BA 8 VAL B 177 VAL B 180 -1 O TYR B 179 N ARG B 81 SHEET 4 BA 8 ALA B 150 ASP B 154 1 O VAL B 151 N VAL B 178 SHEET 5 BA 8 TRP B 117 VAL B 121 1 O GLY B 119 N ILE B 152 SHEET 6 BA 8 ALA B 91 MET B 98 1 O GLU B 94 N VAL B 118 SHEET 7 BA 8 ALA B 200 GLN B 203 -1 O ALA B 200 N GLY B 93 SHEET 8 BA 8 THR B 55 GLU B 64 1 O THR B 55 N PHE B 57 CRYST1 109.198 112.629 62.220 90.00 91.01 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009158 0.000000 0.000161 0.00000 SCALE2 0.000000 0.008879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016075 0.00000